Rmu_ssc0000160.1_g000001

Protein SHI RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000160.1
OG0012802
Physical Location & Seq
Forward (+)
7088 .. 8556
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000160.1_g000001.1.cds

Sequence Viewer

Length: 1026 bp
atggctgggttcttcggtaatttagggggaagagatcaagggccgagaaacaaacaagacggagacgatgaaagaggaggaaatttaaacctgttttcgtacggaaacgaagagatctacaacaacaaggggggtttcgagttatggccacagtatcatcctcaccatcctcatcatcatcagcaaagcttgaactactacgcgtttggagtggatcctagccgtaataacaaccacaacaacttggagggcaacgtctcggatgactcatcttcggggttgagactcactgtgatgcgacaaggaagcggcggtggcggtggcggtagtggtctaggatcgggcggaatgaattgtcaggattgcgggaatcaagctaagaaagactgtcctcacttgcggtgccgaacatgttgcaagagccgagggtttcagtgccaaacacacgtcaagagcacttgggttcctgccgcgaaacgccgcgagaggcaggaacaattctctgctcttcagcaacaacaacaacaacaacagcagttacagtttccgaaaaggcagagagacaatcaagcaggaggagctggaggctcttctctagcctgcgttcgtatacccactaacacgtcagggttggagcttgcaccatttccagcggaggtgagctcgccagccctgttccggtgtgtgagagtcagtgcaatggacgatgtggaggagcagtacgcgtaccagacggcggtaaacatcggagggcacgtgttcaagggacttctatacgatcaaggactggatggtcattacacaagcgcaaccaccgccggcgatagctcatcaggccaacaagacggaggaggcggagggggacatcatcataataatcaacagcaacttaatcttataaacaccaccacaagcacaagtgccaacccacctacggcgacgttgctcgaccctacggtggtgtttccgactccgctgaatgcttttgtggctggtacgcaatacttcccacctccgaggtcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

341

Amino Acids

36.78

Weight (kDa)

6.91

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012802)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19790 AT1G19790 AT1G75520
fragaria_vesca FvH4_2g38950
malus_domestica MD08G1021500.v1.1 MD15G1019200.v1.1
prunus_persica Prupe.1G371500_v2.0.a1 Prupe.1G371500_v2.0.a1
pyrus_communis pycom08g01700 pycom15g01600
rosa_chinensis RchiOBHm_Chr6g0302041
rosa_laevigata RLG00000011200
rosa_multiflora Rmu_ssc0000160.1_g000001
rosa_roxburghii Rroxscaffold_7G00166150
rosa_rugosa Rorug06G0311300
rosa_samantha Rh6AG424100 Rh6CG437100
rosa_wichuraiana Rw6G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 899
AasI GACNNNNNNGTC 1 cut(s) 792
AccB1I GGYRCC 1 cut(s) 402
AccI GTMKAC 1 cut(s) 610
AccII CGCG 4 cut(s) 203, 473, 483, 725
AclWI GGATC 3 cut(s) 209, 222, 346
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 494
AcvI CACGTG 1 cut(s) 757
AfaI GTAC 4 cut(s) 101, 722, 728, 997
AfiI CCNNNNNNNGG 4 cut(s) 678, 736, 934, 958
AflIII ACRYGT 6 cut(s) 201, 410, 445, 621, 723, 756
AgsI TTSAA 2 cut(s) 193, 763
AjiI CACGTC 2 cut(s) 448, 624
AluBI AGCT 6 cut(s) 189, 377, 581, 637, 663, 828
AluI AGCT 6 cut(s) 189, 377, 581, 637, 663, 828
Alw21I GWGCWC 2 cut(s) 458, 665
Alw26I GTCTC 4 cut(s) 57, 262, 277, 555
AlwI GGATC 3 cut(s) 209, 222, 346
AoxI GGCC 3 cut(s) 41, 146, 835
ApoI RAATTY 1 cut(s) 82
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 155, 670
BaeGI GKGCMC 1 cut(s) 756
BalI TGGCCA 1 cut(s) 148
BamHI GGATCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 402
BanII GRGCYC 1 cut(s) 665
BbrPI CACGTG 1 cut(s) 757
Bbv12I GWGCWC 2 cut(s) 458, 665
BccI CCATC 2 cut(s) 174, 785
BceAI ACGGC 3 cut(s) 207, 750, 951
BcgI CGANNNNNNTGC 2 cut(s) 396, 430
BcoDI GTCTC 4 cut(s) 57, 262, 277, 555
BfaI CTAG 3 cut(s) 219, 335, 596
BglII AGATCT 1 cut(s) 114
BisI GCNGC 3 cut(s) 310, 471, 481
BlsI GCNGC 3 cut(s) 311, 472, 482
BmgBI CACGTC 2 cut(s) 448, 624
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 3 cut(s) 216, 404, 465
BmsI GCATC 1 cut(s) 285
BplI GAGNNNNNCTC 2 cut(s) 647, 679
BpmI CTGGAG 1 cut(s) 603
BsaAI YACGTR 1 cut(s) 757
BsaJI CCNNGG 2 cut(s) 424, 1016
BsaWI WCCGGW 1 cut(s) 678
BsaXI ACNNNNNCTCC 4 cut(s) 704, 734, 741, 771
Bsc4I CCNNNNNNNGG 4 cut(s) 678, 736, 934, 958
Bse118I RCCGGY 1 cut(s) 818
Bse1I ACTGG 1 cut(s) 792
Bse3DI GCAATG 1 cut(s) 705
BseDI CCNNGG 2 cut(s) 424, 1016
BseGI GGATG 4 cut(s) 157, 166, 268, 796
BseLI CCNNNNNNNGG 4 cut(s) 678, 736, 934, 958
BseMI GCAATG 1 cut(s) 705
BseNI ACTGG 1 cut(s) 792
BseRI GAGGAG 4 cut(s) 90, 591, 728, 864
BseSI GKGCMC 1 cut(s) 756
BseYI CCCAGC 1 cut(s) 5
Bsh1236I CGCG 4 cut(s) 203, 473, 483, 725
BshFI GGCC 3 cut(s) 43, 148, 837
BshNI GGYRCC 1 cut(s) 402
BsiHKAI GWGCWC 2 cut(s) 458, 665
BsiSI CCGG 2 cut(s) 679, 819
BsiWI CGTACG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 780, 876
BslI CCNNNNNNNGG 4 cut(s) 678, 736, 934, 958
BsmAI GTCTC 4 cut(s) 57, 262, 277, 555
BsmBI CGTCTC 2 cut(s) 57, 262
BsmFI GGGAC 2 cut(s) 780, 876
BsmI GAATGC 1 cut(s) 985
BsnI GGCC 3 cut(s) 43, 148, 837
Bsp1286I GDGCHC 3 cut(s) 458, 665, 756
Bsp143I GATC 5 cut(s) 34, 114, 214, 338, 778
BspANI GGCC 3 cut(s) 43, 148, 837
BspFNI CGCG 4 cut(s) 203, 473, 483, 725
BspLI GGNNCC 3 cut(s) 216, 404, 465
BspPI GGATC 3 cut(s) 209, 222, 346
BspQI GCTCTTC 2 cut(s) 513, 595
BspT107I GGYRCC 1 cut(s) 402
BsrDI GCAATG 1 cut(s) 705
BsrFI RCCGGY 1 cut(s) 818
BsrI ACTGG 1 cut(s) 792
BssAI RCCGGY 1 cut(s) 818
BssECI CCNNGG 2 cut(s) 424, 1016
BssMI GATC 5 cut(s) 34, 114, 214, 338, 778
BssNAI GTATAC 1 cut(s) 611
Bst1107I GTATAC 1 cut(s) 611
Bst4CI ACNGT 5 cut(s) 153, 292, 389, 543, 958
Bst6I CTCTTC 4 cut(s) 25, 105, 513, 595
BstBAI YACGTR 1 cut(s) 757
BstC8I GCNNGC 5 cut(s) 601, 639, 665, 669, 820
BstDEI CTNAG 2 cut(s) 378, 1023
BstF5I GGATG 4 cut(s) 157, 166, 268, 796
BstFNI CGCG 4 cut(s) 203, 473, 483, 725
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 5 cut(s) 37, 117, 217, 341, 781
BstMAI GTCTC 4 cut(s) 57, 262, 277, 555
BstMBI GATC 5 cut(s) 34, 114, 214, 338, 778
BstMWI GCNNNNNNNGC 5 cut(s) 315, 578, 815, 834, 989
BstNSI RCATGY 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 756
BstUI CGCG 4 cut(s) 203, 473, 483, 725
BstX2I RGATCY 2 cut(s) 114, 214
BstYI RGATCY 2 cut(s) 114, 214
BstZ17I GTATAC 1 cut(s) 611
BsuRI GGCC 3 cut(s) 43, 148, 837
BtrI CACGTC 2 cut(s) 448, 624
BtsCI GGATG 4 cut(s) 157, 166, 268, 796
BtsIMutI CAGTG 3 cut(s) 288, 440, 700
Cac8I GCNNGC 5 cut(s) 601, 639, 665, 669, 820
CfoI GCGC 1 cut(s) 809
Cfr10I RCCGGY 1 cut(s) 818
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 4 cut(s) 100, 721, 727, 996
CviAII CATG 1 cut(s) 411
CviQI GTAC 4 cut(s) 100, 721, 727, 996
DdeI CTNAG 2 cut(s) 378, 1023
DpnI GATC 5 cut(s) 36, 116, 216, 340, 780
DpnII GATC 5 cut(s) 34, 114, 214, 338, 778
DraI TTTAAA 1 cut(s) 87
DrdI GACNNNNNNGTC 1 cut(s) 792
DseDI GACNNNNNNGTC 1 cut(s) 792
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 4 cut(s) 25, 105, 513, 595
EarI CTCTTC 4 cut(s) 25, 105, 513, 595
EciI GGCGGA 2 cut(s) 360, 870
Ecl136II GAGCTC 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 665
Eco53kI GAGCTC 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 494
Eco72I CACGTG 1 cut(s) 757
EcoICRI GAGCTC 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 665
Esp3I CGTCTC 2 cut(s) 57, 262
FaeI CATG 1 cut(s) 414
FaiI YATR 6 cut(s) 145, 412, 611, 775, 873, 899
FaqI GGGAC 2 cut(s) 780, 876
FatI CATG 1 cut(s) 410
FauI CCCGC 1 cut(s) 359
FblI GTMKAC 1 cut(s) 610
Fnu4HI GCNGC 3 cut(s) 310, 471, 481
FokI GGATG 4 cut(s) 144, 153, 275, 803
FriOI GRGCYC 1 cut(s) 665
Fsp4HI GCNGC 3 cut(s) 310, 471, 481
FspBI CTAG 3 cut(s) 219, 335, 596
GlaI GCGC 1 cut(s) 808
GluI GCNGC 3 cut(s) 310, 471, 481
GsaI CCCAGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 3 cut(s) 43, 148, 837
HapII CCGG 2 cut(s) 679, 819
HhaI GCGC 1 cut(s) 809
Hin1II CATG 1 cut(s) 414
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HindIII AAGCTT 1 cut(s) 187
HinfI GANTC 5 cut(s) 266, 285, 370, 690, 970
HpaII CCGG 2 cut(s) 679, 819
HphI GGTGA 2 cut(s) 155, 670
Hpy166II GTNNAC 2 cut(s) 611, 742
Hpy188I TCNGA 5 cut(s) 262, 549, 749, 969, 1017
Hpy188III TCNNGA 2 cut(s) 359, 451
Hpy8I GTNNAC 2 cut(s) 611, 742
Hpy99I CGWCG 1 cut(s) 943
HpyCH4III ACNGT 5 cut(s) 153, 292, 389, 543, 958
HpyCH4IV ACGT 5 cut(s) 255, 447, 623, 756, 941
HpyCH4V TGCA 3 cut(s) 417, 641, 698
HpyF10VI GCNNNNNNNGC 5 cut(s) 315, 578, 815, 834, 989
HpyF3I CTNAG 2 cut(s) 378, 1023
HpySE526I ACGT 5 cut(s) 255, 447, 623, 756, 941
Hsp92II CATG 1 cut(s) 414
HspAI GCGC 1 cut(s) 807
KroI GCCGGC 1 cut(s) 818
KroNI GCCGGC 1 cut(s) 820
Kzo9I GATC 5 cut(s) 34, 114, 214, 338, 778
LguI GCTCTTC 2 cut(s) 513, 595
LmnI GCTCC 3 cut(s) 578, 634, 715
LweI GCATC 1 cut(s) 285
MaeI CTAG 3 cut(s) 219, 335, 596
MaeII ACGT 5 cut(s) 255, 447, 623, 756, 941
MaeIII GTNAC 1 cut(s) 537
MalI GATC 5 cut(s) 36, 116, 216, 340, 780
MboI GATC 5 cut(s) 34, 114, 214, 338, 778
MboII GAAGA 6 cut(s) 4, 42, 122, 264, 500, 582
MflI RGATCY 2 cut(s) 114, 214
MhlI GDGCHC 3 cut(s) 458, 665, 756
MlsI TGGCCA 1 cut(s) 148
MluCI AATT 4 cut(s) 19, 82, 352, 497
MluI ACGCGT 2 cut(s) 201, 723
MluNI TGGCCA 1 cut(s) 148
MlyI GAGTC 4 cut(s) 260, 279, 699, 964
MmeI TCCRAC 2 cut(s) 612, 992
Mox20I TGGCCA 1 cut(s) 148
MreI CGCCGGCG 1 cut(s) 818
MroNI GCCGGC 1 cut(s) 818
MscI TGGCCA 1 cut(s) 148
MseI TTAA 2 cut(s) 86, 891
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 148
MspA1I CMGCKG 2 cut(s) 653, 976
MspI CCGG 2 cut(s) 679, 819
Mva1269I GAATGC 1 cut(s) 985
MvnI CGCG 4 cut(s) 203, 473, 483, 725
MwoI GCNNNNNNNGC 5 cut(s) 315, 578, 815, 834, 989
NaeI GCCGGC 1 cut(s) 820
NdeII GATC 5 cut(s) 34, 114, 214, 338, 778
NgoMIV GCCGGC 1 cut(s) 818
NlaIII CATG 1 cut(s) 414
NlaIV GGNNCC 3 cut(s) 216, 404, 465
NmeAIII GCCGAG 2 cut(s) 69, 449
NspI RCATGY 1 cut(s) 414
PciI ACATGT 1 cut(s) 410
PciSI GCTCTTC 2 cut(s) 513, 595
PcsI WCGNNNNNNNCGW 1 cut(s) 753
PctI GAATGC 1 cut(s) 985
PdiI GCCGGC 1 cut(s) 820
PfeI GAWTC 1 cut(s) 370
Pfl23II CGTACG 1 cut(s) 99
PkrI GCNGC 3 cut(s) 311, 472, 482
PleI GAGTC 4 cut(s) 260, 279, 698, 964
PmaCI CACGTG 1 cut(s) 757
PmlI CACGTG 1 cut(s) 757
PpsI GAGTC 4 cut(s) 260, 279, 698, 964
Ppu21I YACGTR 1 cut(s) 757
PscI ACATGT 1 cut(s) 410
PsiI TTATAA 1 cut(s) 899
Psp124BI GAGCTC 1 cut(s) 665
PspCI CACGTG 1 cut(s) 757
PspFI CCCAGC 1 cut(s) 5
PspLI CGTACG 1 cut(s) 99
PspN4I GGNNCC 3 cut(s) 216, 404, 465
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 2 cut(s) 114, 214
RsaI GTAC 4 cut(s) 101, 722, 728, 997
RsaNI GTAC 4 cut(s) 100, 721, 727, 996
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 665
SapI GCTCTTC 2 cut(s) 513, 595
SaqAI TTAA 2 cut(s) 86, 891
SatI GCNGC 3 cut(s) 310, 471, 481
Sau3AI GATC 5 cut(s) 34, 114, 214, 338, 778
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 4 cut(s) 260, 279, 699, 964
SduI GDGCHC 3 cut(s) 458, 665, 756
SfaNI GCATC 1 cut(s) 285
SgrAI CRCCGGYG 1 cut(s) 818
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 4 cut(s) 19, 82, 352, 497
SspMI CTAG 3 cut(s) 219, 335, 596
SstI GAGCTC 1 cut(s) 665
TaaI ACNGT 5 cut(s) 153, 292, 389, 543, 958
TaiI ACGT 5 cut(s) 258, 450, 626, 759, 944
TaqI TCGA 2 cut(s) 138, 948
TasI AATT 4 cut(s) 19, 82, 352, 497
TauI GCSGC 3 cut(s) 312, 473, 483
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 2 cut(s) 86, 891
Tru9I TTAA 2 cut(s) 86, 891
TscAI CASTG 3 cut(s) 295, 440, 700
TspDTI ATGAA 2 cut(s) 84, 365
TspGWI ACGGA 3 cut(s) 75, 117, 861
TspRI CASTG 3 cut(s) 295, 440, 700
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 414
XmiI GTMKAC 1 cut(s) 610
XspI CTAG 3 cut(s) 219, 335, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.