Prupe.1G371500_v2.0.a1

Protein SHI RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012802
Physical Location & Seq
Reverse (-)
33860982 .. 33863529
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G371500.2

Sequence Viewer

Length: 1119 bp
ATGGCTGGCTTGTTTTGCTTAGGCGGAAGAGATCAAGCTCCAACAAGCAGCAGCAAACAAGAGGGCCGAGGAGGAGGAGGAGGAGATCAAGAAAGAGTGGAAGGAGGAGGAGGAAACCTGTATTTGTACAGATCATCAAACGAGGGACAGGCCGAGATCTACAACAAGGGCTTCGAGATATGGCCTTCCCAGTATCATCACCCACACCAGAATTTGAACTACTACTCGTTTGGAGTGGATCCTAGTTACAACCGAAGACACTTACACAACGACGACCACGACCACAACCACAACGACGTCGTCTCTGCGGATGATCTGTCTTCAGGATTGAGACTCGCGGTGATGAGGCAAGGTGGTGGGGGAGGGTTAGGAGGGTCGAGCAGCAGCGGCATGAATTGCCAAGACTGCGGGAACCAAGCCAAGAAAGACTGCCCTCACATGAGGTGCAGAACTTGCTGCAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCTGCCGCCAAACGCCGAGAGAGGCAAGAACAATTCTCTGGTCTGCAACAAAATCAACAACAACAAGAACAGCAGCAACAGCAGCTACAGTTTCGAGGAGACAATCCCAAAAGGCAGAGAGAGAGTCAAGGGGGGGCGGGCTCTCTTGCCTGCGTTCGTTTGCCATCCAACACGTCAGGGTTGGAACTGGCACAATTTCCATCAGAAGTGAGTTCACCAGCGGTGTTCCGTTGTGTAAGAGTAAGTGCAATGGACGATGCAGATGACCAGTACGCCTATCAAACGGCTGTCAACATCGGAGGCCATGTATTCAAGGGACTTCTCTACGATCAAGGCCCCGATGGTCAATATTACCCAAGTTCTAGTACTGGAGGAGGAGGAGAAAGCTCCTCAGGCGGCCGTCATGATCATCAAGAAGGCGGAGGAGCCCATCCACATCATCAGCAACATAATCTGGTTACAGTCGCAGCCACTGCCGGCACCACCAGCCACGGCGGAAACCCATCTACCACGTTGCTAGACCCGTCACTCTTCCCAACTCCACTCAATGCTTTCATGGCTGAAGAAGAAGAAGGCCTAGGAAGTGGAGGAGGAGAGGATGATTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

373

Amino Acids

40.03

Weight (kDa)

5.8

Isoelectric Point (pI)

60.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012802)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19790 AT1G19790 AT1G75520
fragaria_vesca FvH4_2g38950
malus_domestica MD08G1021500.v1.1 MD15G1019200.v1.1
prunus_persica Prupe.1G371500_v2.0.a1 Prupe.1G371500_v2.0.a1
pyrus_communis pycom08g01700 pycom15g01600
rosa_chinensis RchiOBHm_Chr6g0302041
rosa_laevigata RLG00000011200
rosa_multiflora Rmu_ssc0000160.1_g000001
rosa_roxburghii Rroxscaffold_7G00166150
rosa_rugosa Rorug06G0311300
rosa_samantha Rh6AG424100 Rh6CG437100
rosa_wichuraiana Rw6G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 986
AccII CGCG 1 cut(s) 338
AclWI GGATC 2 cut(s) 233, 246
AcoI YGGCCR 1 cut(s) 904
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 2 cut(s) 306, 1089
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 3 cut(s) 128, 779, 874
AflIII ACRYGT 1 cut(s) 678
AgsI TTSAA 2 cut(s) 217, 820
AjiI CACGTC 2 cut(s) 490, 681
AluBI AGCT 3 cut(s) 38, 592, 894
AluI AGCT 3 cut(s) 38, 592, 894
Alw21I GWGCWC 1 cut(s) 500
Alw26I GTCTC 3 cut(s) 307, 325, 600
AlwI GGATC 2 cut(s) 233, 246
AlwNI CAGNNNCTG 1 cut(s) 980
AoxI GGCC 7 cut(s) 64, 150, 182, 808, 841, 904, 1081
ApeKI GCWGC 8 cut(s) 48, 51, 381, 384, 456, 580, 589, 974
ApoI RAATTY 1 cut(s) 211
AspA2I CCTAGG 1 cut(s) 1084
AspS9I GGNCC 2 cut(s) 64, 842
AsuHPI GGTGA 3 cut(s) 191, 352, 714
AvrII CCTAGG 1 cut(s) 1084
AxyI CCTNAGG 1 cut(s) 898
BamHI GGATCC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 986
BanII GRGCYC 2 cut(s) 650, 937
BbsI GAAGAC 2 cut(s) 262, 312
Bbv12I GWGCWC 1 cut(s) 500
BbvI GCAGC 8 cut(s) 60, 63, 393, 396, 443, 592, 601, 986
BccI CCATC 5 cut(s) 679, 715, 842, 945, 1018
BceAI ACGGC 3 cut(s) 807, 891, 1015
BclI TGATCA 1 cut(s) 913
BcoDI GTCTC 3 cut(s) 307, 325, 600
BfaI CTAG 4 cut(s) 243, 870, 1025, 1085
BfmI CTRYAG 1 cut(s) 593
BglII AGATCT 1 cut(s) 156
BlnI CCTAGG 1 cut(s) 1084
BmcAI AGTACT 1 cut(s) 874
BmgBI CACGTC 2 cut(s) 490, 681
BmgT120I GGNCC 2 cut(s) 64, 842
BmiI GGNNCC 6 cut(s) 240, 413, 507, 844, 934, 988
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 754
BmuI ACTGGG 1 cut(s) 184
BpiI GAAGAC 2 cut(s) 262, 312
BpmI CTGGAG 1 cut(s) 897
Bpu10I CCTNAGC 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 4 cut(s) 67, 466, 997, 1084
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bse118I RCCGGY 1 cut(s) 983
Bse1I ACTGG 4 cut(s) 190, 699, 775, 880
Bse21I CCTNAGG 1 cut(s) 898
Bse3DI GCAATG 1 cut(s) 762
BseDI CCNNGG 4 cut(s) 67, 466, 997, 1084
BseGI GGATG 4 cut(s) 316, 671, 937, 1111
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 1 cut(s) 912
BseNI ACTGG 4 cut(s) 190, 699, 775, 880
BseX3I CGGCCG 1 cut(s) 904
BseXI GCAGC 8 cut(s) 60, 63, 393, 396, 443, 592, 601, 986
BsgI GTGCAG 1 cut(s) 466
Bsh1236I CGCG 1 cut(s) 338
Bsh1285I CGRYCG 1 cut(s) 907
BshFI GGCC 7 cut(s) 66, 152, 184, 810, 843, 906, 1083
BshNI GGYRCC 1 cut(s) 986
BsiEI CGRYCG 1 cut(s) 907
BsiHKAI GWGCWC 1 cut(s) 500
BsiSI CCGG 1 cut(s) 984
BslFI GGGAC 2 cut(s) 159, 837
BsmAI GTCTC 3 cut(s) 307, 325, 600
BsmBI CGTCTC 1 cut(s) 307
BsmFI GGGAC 2 cut(s) 159, 837
BsnI GGCC 7 cut(s) 66, 152, 184, 810, 843, 906, 1083
Bsp1286I GDGCHC 3 cut(s) 500, 650, 937
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 8 cut(s) 31, 85, 131, 156, 238, 313, 835, 913
BspANI GGCC 7 cut(s) 66, 152, 184, 810, 843, 906, 1083
BspCNI CTCAG 1 cut(s) 911
BspFNI CGCG 1 cut(s) 338
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 6 cut(s) 240, 413, 507, 844, 934, 988
BspPI GGATC 2 cut(s) 233, 246
BspT107I GGYRCC 1 cut(s) 986
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 983
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 4 cut(s) 190, 699, 775, 880
BssAI RCCGGY 1 cut(s) 983
BssECI CCNNGG 4 cut(s) 67, 466, 997, 1084
BssMI GATC 8 cut(s) 31, 85, 131, 156, 238, 313, 835, 913
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 1084
Bst4CI ACNGT 2 cut(s) 597, 970
Bst6I CTCTTC 2 cut(s) 22, 1043
BstACI GRCGYC 1 cut(s) 297
BstAPI GCANNNNNTGC 3 cut(s) 396, 453, 980
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 4 cut(s) 7, 646, 658, 985
BstDEI CTNAG 2 cut(s) 19, 898
BstDSI CCRYGG 1 cut(s) 997
BstF5I GGATG 4 cut(s) 316, 671, 937, 1111
BstFNI CGCG 1 cut(s) 338
BstKTI GATC 8 cut(s) 34, 88, 134, 159, 241, 316, 838, 916
BstMAI GTCTC 3 cut(s) 307, 325, 600
BstMBI GATC 8 cut(s) 31, 85, 131, 156, 238, 313, 835, 913
BstMCI CGRYCG 1 cut(s) 907
BstSFI CTRYAG 1 cut(s) 593
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 8 cut(s) 60, 63, 393, 396, 443, 592, 601, 986
BstV2I GAAGAC 2 cut(s) 262, 312
BstX2I RGATCY 2 cut(s) 156, 238
BstYI RGATCY 2 cut(s) 156, 238
BstZI CGGCCG 1 cut(s) 904
Bsu36I CCTNAGG 1 cut(s) 898
BsuRI GGCC 7 cut(s) 66, 152, 184, 810, 843, 906, 1083
BtgI CCRYGG 1 cut(s) 997
BtrI CACGTC 2 cut(s) 490, 681
BtsCI GGATG 4 cut(s) 316, 671, 937, 1111
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 2 cut(s) 482, 978
Cac8I GCNNGC 4 cut(s) 7, 646, 658, 985
CaiI CAGNNNCTG 1 cut(s) 980
CciI TCATGA 1 cut(s) 910
Cfr10I RCCGGY 1 cut(s) 983
Cfr13I GGNCC 2 cut(s) 64, 842
Csp6I GTAC 3 cut(s) 127, 778, 873
CviAII CATG 5 cut(s) 391, 439, 812, 911, 1063
CviQI GTAC 3 cut(s) 127, 778, 873
DdeI CTNAG 2 cut(s) 19, 898
DpnI GATC 8 cut(s) 33, 87, 133, 158, 240, 315, 837, 915
DpnII GATC 8 cut(s) 31, 85, 131, 156, 238, 313, 835, 913
EaeI YGGCCR 1 cut(s) 904
EagI CGGCCG 1 cut(s) 904
Eam1104I CTCTTC 2 cut(s) 22, 1043
EarI CTCTTC 2 cut(s) 22, 1043
EciI GGCGGA 3 cut(s) 39, 942, 1017
EclXI CGGCCG 1 cut(s) 904
Eco130I CCWWGG 1 cut(s) 1084
Eco147I AGGCCT 1 cut(s) 1083
Eco24I GRGCYC 2 cut(s) 650, 937
Eco52I CGGCCG 1 cut(s) 904
Eco57I CTGAAG 2 cut(s) 306, 1089
Eco81I CCTNAGG 1 cut(s) 898
EcoO109I RGGNCCY 1 cut(s) 842
EcoT14I CCWWGG 1 cut(s) 1084
EcoT38I GRGCYC 2 cut(s) 650, 937
ErhI CCWWGG 1 cut(s) 1084
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 5 cut(s) 394, 442, 815, 914, 1066
FaiI YATR 8 cut(s) 181, 392, 440, 813, 912, 957, 1064, 1113
FaqI GGGAC 2 cut(s) 159, 837
FatI CATG 5 cut(s) 390, 438, 811, 910, 1062
FauI CCCGC 2 cut(s) 401, 637
FbaI TGATCA 1 cut(s) 913
FokI GGATG 3 cut(s) 323, 658, 924
FriOI GRGCYC 2 cut(s) 650, 937
FspBI CTAG 4 cut(s) 243, 870, 1025, 1085
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 7 cut(s) 66, 152, 184, 810, 843, 906, 1083
HapII CCGG 1 cut(s) 984
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 5 cut(s) 394, 442, 815, 914, 1066
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 2 cut(s) 333, 631
HpaII CCGG 1 cut(s) 984
HphI GGTGA 3 cut(s) 191, 352, 714
Hpy166II GTNNAC 2 cut(s) 722, 799
Hpy188I TCNGA 2 cut(s) 712, 806
Hpy188III TCNNGA 6 cut(s) 89, 175, 324, 493, 911, 920
Hpy8I GTNNAC 2 cut(s) 722, 799
Hpy99I CGWCG 3 cut(s) 275, 299, 302
HpyAV CCTTC 4 cut(s) 95, 195, 917, 1073
HpyCH4III ACNGT 2 cut(s) 597, 970
HpyCH4IV ACGT 4 cut(s) 297, 489, 680, 1019
HpyCH4V TGCA 5 cut(s) 447, 459, 553, 755, 767
HpyF3I CTNAG 2 cut(s) 19, 898
HpySE526I ACGT 4 cut(s) 297, 489, 680, 1019
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 5 cut(s) 394, 442, 815, 914, 1066
KroI GCCGGC 1 cut(s) 983
KroNI GCCGGC 1 cut(s) 985
Ksp22I TGATCA 1 cut(s) 913
Kzo9I GATC 8 cut(s) 31, 85, 131, 156, 238, 313, 835, 913
LmnI GCTCC 3 cut(s) 43, 899, 932
Lsp1109I GCAGC 8 cut(s) 60, 63, 393, 396, 443, 592, 601, 986
LweI GCATC 1 cut(s) 754
MaeI CTAG 4 cut(s) 243, 870, 1025, 1085
MaeII ACGT 4 cut(s) 297, 489, 680, 1019
MaeIII GTNAC 3 cut(s) 245, 964, 1032
MalI GATC 8 cut(s) 33, 87, 133, 158, 240, 315, 837, 915
MboI GATC 8 cut(s) 31, 85, 131, 156, 238, 313, 835, 913
MboII GAAGA 7 cut(s) 39, 267, 312, 1030, 1082, 1085, 1088
MflI RGATCY 2 cut(s) 156, 238
MhlI GDGCHC 3 cut(s) 500, 650, 937
MluCI AATT 4 cut(s) 211, 394, 539, 701
MlyI GAGTC 2 cut(s) 327, 640
MmeI TCCRAC 3 cut(s) 65, 669, 699
MroNI GCCGGC 1 cut(s) 983
MspA1I CMGCKG 2 cut(s) 387, 728
MspI CCGG 1 cut(s) 984
MvnI CGCG 1 cut(s) 338
NaeI GCCGGC 1 cut(s) 985
NdeII GATC 8 cut(s) 31, 85, 131, 156, 238, 313, 835, 913
NgoMIV GCCGGC 1 cut(s) 983
NlaIII CATG 5 cut(s) 394, 442, 815, 914, 1066
NlaIV GGNNCC 6 cut(s) 240, 413, 507, 844, 934, 988
NmeAIII GCCGAG 4 cut(s) 92, 178, 491, 548
NmuCI GTSAC 1 cut(s) 1032
PagI TCATGA 1 cut(s) 910
PceI AGGCCT 1 cut(s) 1083
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PdiI GCCGGC 1 cut(s) 985
PflFI GACNNNGTC 1 cut(s) 299
PleI GAGTC 2 cut(s) 327, 639
PpsI GAGTC 2 cut(s) 327, 639
PspN4I GGNNCC 6 cut(s) 240, 413, 507, 844, 934, 988
PspPI GGNCC 2 cut(s) 64, 842
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 2 cut(s) 156, 238
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 3 cut(s) 128, 779, 874
RsaNI GTAC 3 cut(s) 127, 778, 873
Sau3AI GATC 8 cut(s) 31, 85, 131, 156, 238, 313, 835, 913
Sau96I GGNCC 2 cut(s) 64, 842
ScaI AGTACT 1 cut(s) 874
SchI GAGTC 2 cut(s) 327, 640
SduI GDGCHC 3 cut(s) 500, 650, 937
SfaNI GCATC 1 cut(s) 754
SfcI CTRYAG 1 cut(s) 593
Sse9I AATT 4 cut(s) 211, 394, 539, 701
SseBI AGGCCT 1 cut(s) 1083
SspI AATATT 1 cut(s) 857
SspMI CTAG 4 cut(s) 243, 870, 1025, 1085
StuI AGGCCT 1 cut(s) 1083
StyI CCWWGG 1 cut(s) 1084
TaaI ACNGT 2 cut(s) 597, 970
TaiI ACGT 4 cut(s) 300, 492, 683, 1022
TaqI TCGA 3 cut(s) 174, 377, 601
TasI AATT 4 cut(s) 211, 394, 539, 701
TatI WGTACW 2 cut(s) 126, 872
TauI GCSGC 3 cut(s) 390, 515, 906
TscAI CASTG 2 cut(s) 482, 985
TseFI GTSAC 1 cut(s) 1032
TseI GCWGC 8 cut(s) 48, 51, 381, 384, 456, 580, 589, 974
Tsp45I GTSAC 1 cut(s) 1032
TspDTI ATGAA 2 cut(s) 407, 1051
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 2 cut(s) 482, 985
Tth111I GACNNNGTC 1 cut(s) 299
XapI RAATTY 1 cut(s) 211
XmaJI CCTAGG 1 cut(s) 1084
XspI CTAG 4 cut(s) 243, 870, 1025, 1085
ZraI GACGTC 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.