Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009019

Physical Location & Seq

Genomic Coordinates Reverse (-)

7134659 .. 7137828

Gene Structure 3170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGTTAGATCAGATGAAAATAGCCTTGGATTAATCGGATCAATGAGTCTCCAAGGGGGAGGAGTAGTAGGAAAGATCAAGACGACGGCAACAACAGGACCGACAAGAAGAGCACTAAGTACTATTAACAAGAACATCACTGAAGCGCCGTCTTACCCTTATGCTGTCAACAAGAGATCAGTTTCTGAAAGAGATGGCATTTGTAATAAACCACCTGTGCATCGACCAGTTACTAGGAAGTTTGCTGCTCAGTTAGCAGATCATAAGCCACATATCCGTGATGAGGAAACTAAGAAACCAGACTCAGTTTCAAGTGAAGAACCAGAGACGATTATCATTGATGTGGATGAAAGTGATAAAGAAGGAGGTGACTCTAATGAGCCAATGTTTGTACAACATACTGAAGCAATGCTGGAGGAGATTGAACAGATGGAGAAGGAGATTGAAATGGAAGATGCAGACAAAGAAGAAGAGCCTGTGATCGATATTGATGCCTGTGATAAGAATAATCCTTTGGCTGCGGTTGAATATATCCATGATATGCATACCTTCTACAAGAATTTTGAGAAACTTAGTTGCGTGCCTCCTAACTATATGGACAATCAACAAGATCTTAATGAGAGAATGAGAGGAATCCTCATTGACTGGTTAATTGAGGTGCACTACAAGTTTGAACTGATGGAGGAAACTCTTTATCTCACAATCAATGTCATCGACAGATTCCTTGCGGTTCATCAAATCGTGAGGAAAAAGCTTCAGCTTGTTGGTGTTACTGCTTTGTTGCTTGCATGTAAATATGAAGAAGTTTCAGTTCCAGTGGTAGATGATCTCATCTTGATCTCTGACAAAGCTTACTCTAGAAGAGAAGTGCTAGATATGGAGAAGCTAATGGCCAACACCTTGCAATTCAATTTCTCTCTACCAACTCCATATGTTTTCATGAAACGATTTCTCAAAGCTGCCCAATCTGACAAGAAGCTTGAGATTTTATCATTCTTTATGATCGAGCTTTGCCTTGTGGAGTATGAGATGCTAGAGTATCTTCCATCTAAGCTGGCGGCCTCAGCAATCTACACTGCTCAGTGTACACTTAAGGGATTTGAAGAATGGAGCAAAACCTGTGAGTTTCACACAGGCTACAACGAAAAACAGCTACTGGCATGTGCGAGAAAGATGGTTGCTTTCCATCACAAGGCAGGAACAGGGAAGCTCACAGGAGTTCACAGAAAGTACAACACATCTAAGTTCTGTCATGCTGCAAGAACTGAACCAGCTGGGTTTCTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

429

Amino Acids

48.86

Weight (kDa)

5.44

Isoelectric Point (pI)

56.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	180 - 305	1.3e-45	Cyclin, N-terminal domain
Cyclin_C	PF02984	308 - 424	1.4e-38	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20610 AT1G76310 AT1G76310 AT1G76310 AT1G76310
fragaria_vesca	FvH4_2g16590
malus_domestica	MD05G1134100.v1.1 MD10G1139200.v1.1
prunus_persica	Prupe.8G177900_v2.0.a1
pyrus_communis	pycom05g13080 pycom10g11830
rosa_chinensis	RchiOBHm_Chr6g0280651
rosa_laevigata	RLG00000013039
rosa_multiflora	Rmu_co8479241.1_g000001 Rmu_sc0000976.1_g000005
rosa_roxburghii	Rroxscaffold_7G00187790
rosa_rugosa	Rorug06G0133400 Rorug06G0133400
rosa_samantha	Rh6AG246000 Rh6BG248300 Rh6CG249600
rosa_wichuraiana	Rw6G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	521, 728, 1058
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	3 cut(s)	162, 423, 740
AfaI	GTAC	4 cut(s)	121, 393, 1087, 1232
AfiI	CCNNNNNNNGG	2 cut(s)	283, 1192
AflII	CTTAAG	1 cut(s)	1091
AgsI	TTSAA	7 cut(s)	312, 425, 446, 527, 674, 910, 1103
AjuI	GAANNNNNNNTTGG	4 cut(s)	9, 41, 497, 529
Alw21I	GWGCWC	2 cut(s)	115, 663
Alw26I	GTCTC	2 cut(s)	53, 320
Alw44I	GTGCAC	1 cut(s)	659
AlwI	GGATC	1 cut(s)	46
AlwNI	CAGNNNCTG	2 cut(s)	185, 1156
AoxI	GGCC	2 cut(s)	891, 1059
ApaLI	GTGCAC	1 cut(s)	659
ApeKI	GCWGC	4 cut(s)	245, 518, 959, 1256
ApoI	RAATTY	1 cut(s)	559
AseI	ATTAAT	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	663
BalI	TGGCCA	1 cut(s)	893
Bbv12I	GWGCWC	2 cut(s)	115, 663
BbvCI	CCTCAGC	1 cut(s)	1063
BbvI	GCAGC	4 cut(s)	232, 505, 946, 1243
BccI	CCATC	6 cut(s)	188, 424, 673, 1054, 1168, 1194
BceAI	ACGGC	2 cut(s)	102, 133
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BcoDI	GTCTC	2 cut(s)	53, 320
BfaI	CTAG	4 cut(s)	234, 858, 872, 1034
BfoI	RGCGCY	1 cut(s)	149
BfrI	CTTAAG	1 cut(s)	1091
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	5 cut(s)	246, 519, 960, 1059, 1257
BlsI	GCNGC	5 cut(s)	247, 520, 961, 1060, 1258
BmcAI	AGTACT	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmsI	GCATC	4 cut(s)	229, 445, 481, 1020
BplI	GAGNNNNNCTC	2 cut(s)	621, 653
BpmI	CTGGAG	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	1063
BpuEI	CTTGAG	1 cut(s)	1001
Bsa29I	ATCGAT	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	25, 52
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 1192
Bse1I	ACTGG	4 cut(s)	227, 650, 815, 1161
Bse3DI	GCAATG	1 cut(s)	414
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	25, 52
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	283, 1192
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	4 cut(s)	263, 318, 1077, 1094
BseNI	ACTGG	4 cut(s)	227, 650, 815, 1161
BseRI	GAGGAG	2 cut(s)	75, 431
BseSI	GKGCMC	1 cut(s)	663
BseXI	GCAGC	4 cut(s)	232, 505, 946, 1243
BseYI	CCCAGC	1 cut(s)	1274
BshFI	GGCC	2 cut(s)	893, 1061
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	2 cut(s)	115, 663
BslI	CCNNNNNNNGG	2 cut(s)	283, 1192
BsmAI	GTCTC	2 cut(s)	53, 320
BsmBI	CGTCTC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	893, 1061
Bsp1286I	GDGCHC	2 cut(s)	115, 663
Bsp1407I	TGTACA	2 cut(s)	391, 1085
BspACI	CCGC	3 cut(s)	521, 728, 1058
BspANI	GGCC	2 cut(s)	893, 1061
BspCNI	CTCAG	4 cut(s)	262, 317, 1076, 1093
BspDI	ATCGAT	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	939
BspPI	GGATC	1 cut(s)	46
BspQI	GCTCTTC	2 cut(s)	103, 465
BspTI	CTTAAG	1 cut(s)	1091
BsrDI	GCAATG	1 cut(s)	414
BsrGI	TGTACA	2 cut(s)	391, 1085
BsrI	ACTGG	4 cut(s)	227, 650, 815, 1161
BssECI	CCNNGG	2 cut(s)	25, 52
BssT1I	CCWWGG	2 cut(s)	25, 52
Bst6I	CTCTTC	3 cut(s)	103, 465, 856
BstAFI	CTTAAG	1 cut(s)	1091
BstAUI	TGTACA	2 cut(s)	391, 1085
BstC8I	GCNNGC	3 cut(s)	581, 786, 1056
BstDEI	CTNAG	9 cut(s)	116, 249, 291, 304, 572, 1050, 1063, 1080, 1242
BstF5I	GGATG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstMAI	GTCTC	2 cut(s)	53, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 1064
BstNSI	RCATGY	2 cut(s)	792, 1164
BstSLI	GKGCMC	1 cut(s)	663
BstV1I	GCAGC	4 cut(s)	232, 505, 946, 1243
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	893, 1061
BsuTUI	ATCGAT	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	352
BtsI	GCAGTG	1 cut(s)	1074
BtsIMutI	CAGTG	4 cut(s)	138, 822, 1074, 1088
Cac8I	GCNNGC	3 cut(s)	581, 786, 1056
CaiI	CAGNNNCTG	2 cut(s)	185, 1156
CciI	TCATGA	1 cut(s)	939
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	483
Csp6I	GTAC	4 cut(s)	120, 392, 1086, 1231
CviAII	CATG	5 cut(s)	536, 789, 940, 1161, 1253
CviQI	GTAC	4 cut(s)	120, 392, 1086, 1231
DdeI	CTNAG	9 cut(s)	116, 249, 291, 304, 572, 1050, 1063, 1080, 1242
EaeI	YGGCCR	1 cut(s)	891
Eam1104I	CTCTTC	3 cut(s)	103, 465, 856
EarI	CTCTTC	3 cut(s)	103, 465, 856
Eco130I	CCWWGG	2 cut(s)	25, 52
Eco47I	GGWCC	1 cut(s)	98
Eco57I	CTGAAG	3 cut(s)	162, 423, 740
EcoT14I	CCWWGG	2 cut(s)	25, 52
EcoT22I	ATGCAT	1 cut(s)	546
ErhI	CCWWGG	2 cut(s)	25, 52
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	5 cut(s)	539, 792, 943, 1164, 1256
FatI	CATG	5 cut(s)	535, 788, 939, 1160, 1252
FauNDI	CATATG	1 cut(s)	931
Fnu4HI	GCNGC	5 cut(s)	246, 519, 960, 1059, 1257
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	5 cut(s)	246, 519, 960, 1059, 1257
FspBI	CTAG	4 cut(s)	234, 858, 872, 1034
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	5 cut(s)	246, 519, 960, 1059, 1257
GsaI	CCCAGC	1 cut(s)	1278
GsuI	CTGGAG	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	893, 1061
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	5 cut(s)	539, 792, 943, 1164, 1256
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	3 cut(s)	752, 849, 977
HinfI	GANTC	5 cut(s)	46, 302, 371, 633, 720
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	5 cut(s)	169, 661, 1086, 1088, 1222
Hpy188I	TCNGA	6 cut(s)	13, 38, 187, 844, 970, 1284
Hpy188III	TCNNGA	5 cut(s)	79, 742, 835, 858, 940
Hpy8I	GTNNAC	5 cut(s)	169, 661, 1086, 1088, 1222
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	356, 430, 559
HpyCH4V	TGCA	7 cut(s)	220, 458, 544, 661, 788, 904, 1259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 1064
HpyF3I	CTNAG	9 cut(s)	116, 249, 291, 304, 572, 1050, 1063, 1080, 1242
Hsp92II	CATG	5 cut(s)	539, 792, 943, 1164, 1256
HspAI	GCGC	1 cut(s)	146
LguI	GCTCTTC	2 cut(s)	103, 465
LmnI	GCTCC	1 cut(s)	1110
Lsp1109I	GCAGC	4 cut(s)	232, 505, 946, 1243
LweI	GCATC	4 cut(s)	229, 445, 481, 1020
MaeI	CTAG	4 cut(s)	234, 858, 872, 1034
MaeIII	GTNAC	3 cut(s)	229, 368, 769
MboII	GAAGA	9 cut(s)	120, 329, 464, 479, 482, 812, 873, 1034, 1115
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	2 cut(s)	115, 663
MlsI	TGGCCA	1 cut(s)	893
MluCI	AATT	4 cut(s)	559, 651, 905, 910
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	3 cut(s)	55, 296, 365
Mox20I	TGGCCA	1 cut(s)	893
Mph1103I	ATGCAT	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	6 cut(s)	32, 126, 615, 650, 1092, 1288
MslI	CAYNNNNRTG	2 cut(s)	276, 341
Msp20I	TGGCCA	1 cut(s)	893
MspA1I	CMGCKG	1 cut(s)	1274
MspCI	CTTAAG	1 cut(s)	1091
MwoI	GCNNNNNNNGC	2 cut(s)	254, 1064
NdeI	CATATG	1 cut(s)	931
NlaIII	CATG	5 cut(s)	539, 792, 943, 1164, 1256
NmuCI	GTSAC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	546
NspI	RCATGY	2 cut(s)	792, 1164
PagI	TCATGA	1 cut(s)	939
PciSI	GCTCTTC	2 cut(s)	103, 465
PfeI	GAWTC	2 cut(s)	633, 720
PkrI	GCNGC	5 cut(s)	247, 520, 961, 1060, 1258
PleI	GAGTC	3 cut(s)	54, 296, 365
PpsI	GAGTC	3 cut(s)	54, 296, 365
PshBI	ATTAAT	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	1274
PspPI	GGNCC	1 cut(s)	98
PstNI	CAGNNNCTG	2 cut(s)	185, 1156
PsuI	RGATCY	1 cut(s)	610
PvuII	CAGCTG	1 cut(s)	1274
RsaI	GTAC	4 cut(s)	121, 393, 1087, 1232
RsaNI	GTAC	4 cut(s)	120, 392, 1086, 1231
RseI	CAYNNNNRTG	2 cut(s)	276, 341
SapI	GCTCTTC	2 cut(s)	103, 465
SaqAI	TTAA	6 cut(s)	32, 126, 615, 650, 1092, 1288
SatI	GCNGC	5 cut(s)	246, 519, 960, 1059, 1257
Sau96I	GGNCC	1 cut(s)	98
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	3 cut(s)	55, 296, 365
SduI	GDGCHC	2 cut(s)	115, 663
SfaNI	GCATC	4 cut(s)	229, 445, 481, 1020
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	276, 341
SmlI	CTYRAG	2 cut(s)	980, 1091
SmoI	CTYRAG	2 cut(s)	980, 1091
Sse9I	AATT	4 cut(s)	559, 651, 905, 910
SsiI	CCGC	3 cut(s)	521, 728, 1058
SspMI	CTAG	4 cut(s)	234, 858, 872, 1034
StyI	CCWWGG	2 cut(s)	25, 52
TaqI	TCGA	4 cut(s)	223, 483, 714, 1005
TaqII	GACCGA	1 cut(s)	115
TasI	AATT	4 cut(s)	559, 651, 905, 910
TatI	WGTACW	4 cut(s)	119, 391, 1085, 1230
TauI	GCSGC	1 cut(s)	1061
TfiI	GAWTC	2 cut(s)	633, 720
Tru1I	TTAA	6 cut(s)	32, 126, 615, 650, 1092, 1288
Tru9I	TTAA	6 cut(s)	32, 126, 615, 650, 1092, 1288
TscAI	CASTG	4 cut(s)	145, 822, 1081, 1088
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	4 cut(s)	245, 518, 959, 1256
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	6 cut(s)	30, 363, 722, 813, 928, 956
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	4 cut(s)	145, 822, 1081, 1088
Vha464I	CTTAAG	1 cut(s)	1091
VneI	GTGCAC	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	32
XapI	RAATTY	1 cut(s)	559
XbaI	TCTAGA	1 cut(s)	857
XceI	RCATGY	2 cut(s)	792, 1164
XspI	CTAG	4 cut(s)	234, 858, 872, 1034
ZrmI	AGTACT	1 cut(s)	121
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.