Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009019

Physical Location & Seq

Genomic Coordinates Reverse (-)

28627694 .. 28630789

Gene Structure 3096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGGTGGATCGGATGAGAACAGACACGGAGTCATTGGACCGATGAATCGACAACAAGGGGGTTTACGTGGAGGAAAGGTAATTCCGACGAATGGACAGACAAGAAGGGCACTGAGTAATATAAACAAGAACATCATCGGAGCTCCGGTCTATCCTTGTGCTGTCAAGAGACCATTCACTGAGAAAAATGGGATTTGTAACAAGAAGATTCCACCTGTTCCAGTGCATCGACCAGTTACTAGGAAATTTGCTGCTCAATTAGCTGAGAACAATCTCCAAATCCACAAGGAGGAAACCAAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGATGTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAAGAGATTGACAAAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTAGAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTATCTGTAGTTGAATACATTAATGACATATATTGCTTCTACAAGAAAAATGAGTGTCGTAGCTGTGTCCCGCCTAACTACATGGAGAATCAACATGACATTAACGAGAGGATGAGAGGAATCCTTTTTGATTGGTTGATTGAGGTACATTACAAGTTTGAGCTGATGGAGGAGACGCTTTACCTGACAATCAATCTCATTGACAGATTTCTTGCGGTTCATCAACATATCGCGAGGAAAAAGCTTCAGCTTGTGGGTGTAACAGCTATGTTACTTGCTTGCAAATATGAAGAAGTTTCAGTTCCAGTTGTTGATGATCTAATCCTGATCTCTGACAAGGCTTATACTAGGACAGAGATTCTTGATATGGAGAAGTTAATGGCGAATACCTTGCAATTCAATTTCTGTCTGCCAACTCCATATGTGTTCATGAGACGGTTTCTCAAAGCTGCACAATCTGACAAAAAGCTTGAGCTTTTATCATTCTTCATGATCGAGCTTTGTTTAGTGGAGTACGAGATGCTTCAGTACACTCCTTCTCAGTTGGCTGCATCGGCGATCTACACTGCTCAGAGCACACTTAAAGGATACGAGGATTGGAGCAAAACCAGTGAGTTCCACTCAGGCTACACCGAAGAAGCGCTTCTGGAATGTTCGAGAAAGATGGTTGGTTTGCATCACAAGGCAGGGACAGGGAAGCTAACAGGTGTTCACAGGAAATACAACACATCCAAATTTGGTTATGCTGCAAGAATTGAACCAGCTGGGTTTCTTCTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

431

Amino Acids

49.24

Weight (kDa)

5.65

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	180 - 306	9.3e-47	Cyclin, N-terminal domain
Cyclin_C	PF02984	309 - 386	2.2e-25	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20610 AT1G76310 AT1G76310 AT1G76310 AT1G76310
fragaria_vesca	FvH4_2g16590
malus_domestica	MD05G1134100.v1.1 MD10G1139200.v1.1
prunus_persica	Prupe.8G177900_v2.0.a1
pyrus_communis	pycom05g13080 pycom10g11830
rosa_chinensis	RchiOBHm_Chr6g0280651
rosa_laevigata	RLG00000013039
rosa_multiflora	Rmu_co8479241.1_g000001 Rmu_sc0000976.1_g000005
rosa_roxburghii	Rroxscaffold_7G00187790
rosa_rugosa	Rorug06G0133400 Rorug06G0133400
rosa_samantha	Rh6AG246000 Rh6BG248300 Rh6CG249600
rosa_wichuraiana	Rw6G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	746
AciI	CCGC	2 cut(s)	584, 728
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	245, 1247
AcuI	CTGAAG	4 cut(s)	414, 483, 743, 1022
AfaI	GTAC	3 cut(s)	660, 1028, 1043
AfeI	AGCGCT	1 cut(s)	1155
AfiI	CCNNNNNNNGG	2 cut(s)	92, 289
AgsI	TTSAA	8 cut(s)	318, 386, 407, 434, 447, 527, 913, 1271
AhdI	GACNNNNNGTC	1 cut(s)	29
Alw21I	GWGCWC	2 cut(s)	145, 1091
Alw26I	GTCTC	4 cut(s)	163, 354, 680, 940
AlwI	GGATC	1 cut(s)	16
Aor51HI	AGCGCT	1 cut(s)	1155
ApeKI	GCWGC	4 cut(s)	251, 962, 1061, 1259
ApoI	RAATTY	2 cut(s)	245, 1247
AseI	ATTAAT	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	1155
AspLEI	GCGC	1 cut(s)	1156
AspS9I	GGNCC	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	145, 1091
BbvI	GCAGC	4 cut(s)	238, 949, 1048, 1246
BccI	CCATC	3 cut(s)	475, 673, 1171
BcgI	CGANNNNNNTGC	2 cut(s)	886, 920
BciVI	GTATCC	1 cut(s)	1094
BcoDI	GTCTC	4 cut(s)	163, 354, 680, 940
BfaI	CTAG	2 cut(s)	240, 861
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	1157
BfuI	GTATCC	1 cut(s)	1094
BisI	GCNGC	4 cut(s)	252, 963, 1062, 1260
BlsI	GCNGC	4 cut(s)	253, 964, 1063, 1261
Bme18I	GGWCC	1 cut(s)	38
BmeRI	GACNNNNNGTC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	38
BmsI	GCATC	5 cut(s)	235, 448, 1023, 1073, 1198
BplI	GAGNNNNNCTC	2 cut(s)	1118, 1150
BpuEI	CTTGAG	1 cut(s)	1004
BsaAI	YACGTR	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	4 cut(s)	63, 93, 132, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 289
Bse1I	ACTGG	4 cut(s)	221, 233, 818, 1122
Bse3DI	GCAATG	1 cut(s)	405
BseGI	GGATG	3 cut(s)	19, 630, 1241
BseLI	CCNNNNNNNGG	2 cut(s)	92, 289
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	6 cut(s)	104, 171, 255, 1067, 1097, 1149
BseNI	ACTGG	4 cut(s)	221, 233, 818, 1122
BseRI	GAGGAG	1 cut(s)	698
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	4 cut(s)	238, 949, 1048, 1246
BseYI	CCCAGC	1 cut(s)	1277
BsgI	GTGCAG	1 cut(s)	948
Bsh1236I	CGCG	1 cut(s)	746
BsiHKAI	GWGCWC	2 cut(s)	145, 1091
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	2 cut(s)	566, 1216
BslI	CCNNNNNNNGG	2 cut(s)	92, 289
BsmAI	GTCTC	4 cut(s)	163, 354, 680, 940
BsmBI	CGTCTC	2 cut(s)	680, 940
BsmFI	GGGAC	2 cut(s)	566, 1216
Bso31I	GGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	112, 145, 1091
Bsp143I	GATC	5 cut(s)	8, 829, 840, 1005, 1071
Bsp68I	TCGCGA	1 cut(s)	746
BspACI	CCGC	2 cut(s)	584, 728
BspCNI	CTCAG	6 cut(s)	105, 172, 256, 1066, 1096, 1148
BspFNI	CGCG	1 cut(s)	746
BspHI	TCATGA	2 cut(s)	942, 1002
BspPI	GGATC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	4 cut(s)	221, 233, 818, 1122
BssMI	GATC	5 cut(s)	8, 829, 840, 1005, 1071
Bst4CI	ACNGT	1 cut(s)	951
Bst6I	CTCTTC	2 cut(s)	402, 465
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	793
BstDEI	CTNAG	6 cut(s)	113, 180, 264, 1053, 1083, 1135
BstF5I	GGATG	3 cut(s)	19, 630, 1241
BstFNI	CGCG	1 cut(s)	746
BstH2I	RGCGCY	1 cut(s)	1157
BstHHI	GCGC	1 cut(s)	1156
BstKTI	GATC	5 cut(s)	11, 832, 843, 1008, 1074
BstMAI	GTCTC	4 cut(s)	163, 354, 680, 940
BstMBI	GATC	5 cut(s)	8, 829, 840, 1005, 1071
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 1067
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	1 cut(s)	746
BstV1I	GCAGC	4 cut(s)	238, 949, 1048, 1246
BsuI	GTATCC	1 cut(s)	1094
BtsCI	GGATG	3 cut(s)	19, 630, 1241
BtsI	GCAGTG	1 cut(s)	1077
BtsIMutI	CAGTG	5 cut(s)	110, 177, 228, 1077, 1129
BtuMI	TCGCGA	1 cut(s)	746
Cac8I	GCNNGC	1 cut(s)	793
CciI	TCATGA	2 cut(s)	942, 1002
CfoI	GCGC	1 cut(s)	1156
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	3 cut(s)	659, 1027, 1042
CviAII	CATG	4 cut(s)	595, 608, 943, 1003
CviQI	GTAC	3 cut(s)	659, 1027, 1042
DdeI	CTNAG	6 cut(s)	113, 180, 264, 1053, 1083, 1135
DpnI	GATC	5 cut(s)	10, 831, 842, 1007, 1073
DpnII	GATC	5 cut(s)	8, 829, 840, 1005, 1071
DriI	GACNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	402, 465
Eam1105I	GACNNNNNGTC	1 cut(s)	29
EarI	CTCTTC	2 cut(s)	402, 465
Ecl136II	GAGCTC	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	38
Eco47III	AGCGCT	1 cut(s)	1155
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	4 cut(s)	414, 483, 743, 1022
EcoICRI	GAGCTC	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	145
Esp3I	CGTCTC	2 cut(s)	680, 940
FaeI	CATG	4 cut(s)	598, 611, 946, 1006
FalI	AAGNNNNNCTT	4 cut(s)	387, 419, 1140, 1172
FaqI	GGGAC	2 cut(s)	566, 1216
FatI	CATG	4 cut(s)	594, 607, 942, 1002
FauI	CCCGC	1 cut(s)	591
FauNDI	CATATG	1 cut(s)	934
Fnu4HI	GCNGC	4 cut(s)	252, 963, 1062, 1260
FokI	GGATG	3 cut(s)	26, 637, 1228
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	252, 963, 1062, 1260
FspBI	CTAG	2 cut(s)	240, 861
GlaI	GCGC	1 cut(s)	1155
GluI	GCNGC	4 cut(s)	252, 963, 1062, 1260
GsaI	CCCAGC	1 cut(s)	1281
HaeII	RGCGCY	1 cut(s)	1157
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	697
HhaI	GCGC	1 cut(s)	1156
Hin1II	CATG	4 cut(s)	598, 611, 946, 1006
Hin6I	GCGC	1 cut(s)	1154
HinP1I	GCGC	1 cut(s)	1154
HindIII	AAGCTT	2 cut(s)	755, 980
HinfI	GANTC	9 cut(s)	30, 46, 208, 336, 443, 473, 601, 633, 871
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	3 cut(s)	65, 1044, 1225
Hpy188I	TCNGA	6 cut(s)	13, 87, 140, 847, 973, 1086
Hpy188III	TCNNGA	8 cut(s)	166, 745, 838, 875, 943, 1003, 1160, 1170
Hpy8I	GTNNAC	3 cut(s)	65, 1044, 1225
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	4 cut(s)	99, 350, 419, 1059
HpyCH4III	ACNGT	1 cut(s)	951
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	8 cut(s)	226, 439, 795, 907, 965, 1064, 1189, 1262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 1067
HpyF3I	CTNAG	6 cut(s)	113, 180, 264, 1053, 1083, 1135
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	598, 611, 946, 1006
HspAI	GCGC	1 cut(s)	1154
Kzo9I	GATC	5 cut(s)	8, 829, 840, 1005, 1071
LmnI	GCTCC	3 cut(s)	140, 148, 1113
Lsp1109I	GCAGC	4 cut(s)	238, 949, 1048, 1246
LweI	GCATC	5 cut(s)	235, 448, 1023, 1073, 1198
MaeI	CTAG	2 cut(s)	240, 861
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	5 cut(s)	197, 235, 497, 772, 783
MalI	GATC	5 cut(s)	10, 831, 842, 1007, 1073
MboI	GATC	5 cut(s)	8, 829, 840, 1005, 1071
MboII	GAAGA	8 cut(s)	217, 365, 419, 482, 815, 991, 1160, 1277
MhlI	GDGCHC	3 cut(s)	112, 145, 1091
MluCI	AATT	7 cut(s)	81, 245, 257, 908, 913, 1247, 1266
MlyI	GAGTC	2 cut(s)	39, 482
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	8 cut(s)	65, 283, 615, 623, 649, 676, 741, 1099
MroXI	GAANNNNTTC	1 cut(s)	1155
MseI	TTAA	5 cut(s)	366, 534, 615, 890, 1095
MspA1I	CMGCKG	2 cut(s)	495, 1277
MspI	CCGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	746
MwoI	GCNNNNNNNGC	2 cut(s)	260, 1067
NdeI	CATATG	1 cut(s)	934
NdeII	GATC	5 cut(s)	8, 829, 840, 1005, 1071
NlaIII	CATG	4 cut(s)	598, 611, 946, 1006
NmuCI	GTSAC	1 cut(s)	497
NruI	TCGCGA	1 cut(s)	746
PagI	TCATGA	2 cut(s)	942, 1002
PdmI	GAANNNNTTC	1 cut(s)	1155
PfeI	GAWTC	7 cut(s)	46, 208, 336, 443, 601, 633, 871
PkrI	GCNGC	4 cut(s)	253, 964, 1063, 1261
PleI	GAGTC	2 cut(s)	38, 481
PpsI	GAGTC	2 cut(s)	38, 481
Ppu21I	YACGTR	1 cut(s)	68
PshBI	ATTAAT	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	1277
PspPI	GGNCC	1 cut(s)	38
PvuII	CAGCTG	2 cut(s)	495, 1277
RruI	TCGCGA	1 cut(s)	746
RsaI	GTAC	3 cut(s)	660, 1028, 1043
RsaNI	GTAC	3 cut(s)	659, 1027, 1042
SacI	GAGCTC	1 cut(s)	145
SaqAI	TTAA	5 cut(s)	366, 534, 615, 890, 1095
SatI	GCNGC	4 cut(s)	252, 963, 1062, 1260
Sau3AI	GATC	5 cut(s)	8, 829, 840, 1005, 1071
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	39, 482
SduI	GDGCHC	3 cut(s)	112, 145, 1091
SfaNI	GCATC	5 cut(s)	235, 448, 1023, 1073, 1198
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	983
SmoI	CTYRAG	1 cut(s)	983
Sse9I	AATT	7 cut(s)	81, 245, 257, 908, 913, 1247, 1266
SsiI	CCGC	2 cut(s)	584, 728
SspMI	CTAG	2 cut(s)	240, 861
SstI	GAGCTC	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	951
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	4 cut(s)	49, 229, 1008, 1169
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	7 cut(s)	81, 245, 257, 908, 913, 1247, 1266
TatI	WGTACW	1 cut(s)	1041
TfiI	GAWTC	7 cut(s)	46, 208, 336, 443, 601, 633, 871
Tru1I	TTAA	5 cut(s)	366, 534, 615, 890, 1095
Tru9I	TTAA	5 cut(s)	366, 534, 615, 890, 1095
TscAI	CASTG	5 cut(s)	117, 184, 228, 1084, 1129
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	4 cut(s)	251, 962, 1061, 1259
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	6 cut(s)	59, 384, 722, 816, 931, 991
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	5 cut(s)	117, 184, 228, 1084, 1129
VpaK11BI	GGWCC	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	2 cut(s)	245, 1247
XmnI	GAANNNNTTC	1 cut(s)	1155
XspI	CTAG	2 cut(s)	240, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.