Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009019

Physical Location & Seq

Genomic Coordinates Reverse (-)

41959343 .. 41964146

Gene Structure 4804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG249600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGTTCCAAGGAGAACAATCAAGGTCTCGTTAGGCCTGCAAATGTCCAAGGTCCAAGATTGTTGGGGGGTTCCAAGTTTGTGAAGGAGATTGGGCACAATCATCGAGCGGCACTAAGCAATATCACCAATTTCAAAAGAGAGGCTTCTGGGAATGATGCGGCTGGTGATAAGAAATTGTCAAATCTGGGACATAGACCCATTACAAGGAGGTTTGCTGCACAAATGGTCCAGCAATGCCCAAAGGAATCTGAGGAAGTCATTGTGACTACATTGGTTCCAAATCCTAGTGGTGTTAGGGATTGTGATCTGGAAATTAAGAAACTGAGCTCATCTACCGTCAATCCTAGTGGTCTTGTGGACTGTGAGATCATAGATGTGGAGGACAGTGAGGATGAAGATTCTGATGCTGTGCCAATGTATGTGAAGCACACAGAAGCTATGCTAGATGAGATTGATAGGATGGAGGAGGATGAAGAATCGGAAGATCCCATTATGGATATAGACACCAGCTGCATTAAGGATCAACTCAGTGTTGTGGAGTACATAGATGACATCTATGCACACTACAGGAAAACTGAGAATCAAAGCTGTGTCTCCCCCAGTTACATGGCCCAGCAACCTGACATTAATGAGAAGATGAGGGCTATTCTTATCGACTGGCTTATTGAGGTCCACTACAAGTTTGAGCTTATGGATGAGACGTTATTCCTCACCATCAATCTTATAGACAGATTCTTAGAGCGTCAAGTGGTGGTCAGAAAGAAGCTTCAGCTGGTTGGTGTGACAGCCATGTTACTAGCCTGCAAGTATGAGGAGGTTTCTGTCCCAATCGTGGAGGATTTTGTTCTGATATCAGACAAGGCATATACAAGGAAAGATGTCCTTGACATGGAGAAATCAATGGTCAACAAGTTACAATTCAACTTTTCTGTTCCTACCTCATATGTTTTCATGAGGAGATTCCTCAAGGCTGCTCAGTCTGACAAAAAGCTTGAGCTTCTGTCCTTCTTCCTCATTGAGCTATGCCTAGTGGAGTATGAAATGCTAAAGTTTCCACCATCTCTGCTAGCTGCTGCAGCAATTTACACCGCTCAGTGTAGTCTTTTAAGGTTCAAGCAGTGGAGCAAAACCAGCGAGTGGTATACCAATTACTCAGAAGATGAACTTCAAGAATGCTCAAGGTTGATGGTTACTTTCCATCAGAAGGCTGAAACTGGTAGGCTAACAGGAGTGCATAGGAAGTACAGTACTTGGAAGTTTGGCAATGCTGCTAAAGCTGAACCAGCTGAGTTCCTCCTGAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

436

Amino Acids

49.81

Weight (kDa)

5.09

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	185 - 310	8.7e-50	Cyclin, N-terminal domain
Cyclin_C	PF02984	313 - 429	1e-37	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20610 AT1G76310 AT1G76310 AT1G76310 AT1G76310
fragaria_vesca	FvH4_2g16590
malus_domestica	MD05G1134100.v1.1 MD10G1139200.v1.1
prunus_persica	Prupe.8G177900_v2.0.a1
pyrus_communis	pycom05g13080 pycom10g11830
rosa_chinensis	RchiOBHm_Chr6g0280651
rosa_laevigata	RLG00000013039
rosa_multiflora	Rmu_co8479241.1_g000001 Rmu_sc0000976.1_g000005
rosa_roxburghii	Rroxscaffold_7G00187790
rosa_rugosa	Rorug06G0133400 Rorug06G0133400
rosa_samantha	Rh6AG246000 Rh6BG248300 Rh6CG249600
rosa_wichuraiana	Rw6G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1140
AccBSI	CCGCTC	2 cut(s)	110, 1094
AccI	GTMKAC	1 cut(s)	1145
AciI	CCGC	3 cut(s)	110, 161, 1092
AclWI	GGATC	2 cut(s)	482, 531
AcuI	CTGAAG	1 cut(s)	755
AfaI	GTAC	3 cut(s)	545, 1247, 1252
AfiI	CCNNNNNNNGG	5 cut(s)	207, 835, 892, 1140, 1207
AgsI	TTSAA	4 cut(s)	136, 925, 1117, 1172
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	3 cut(s)	32, 601, 695
AlwI	GGATC	2 cut(s)	482, 531
AoxI	GGCC	2 cut(s)	35, 612
ApeKI	GCWGC	7 cut(s)	218, 513, 974, 1073, 1076, 1079, 1271
AseI	ATTAAT	1 cut(s)	630
AspS9I	GGNCC	4 cut(s)	53, 229, 613, 673
AsuHPI	GGTGA	3 cut(s)	118, 179, 706
AsuNHI	GCTAGC	1 cut(s)	1069
AvaII	GGWCC	3 cut(s)	53, 229, 673
BaeGI	GKGCMC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	7 cut(s)	205, 500, 961, 1060, 1063, 1091, 1258
BccI	CCATC	5 cut(s)	457, 725, 1069, 1183, 1209
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BcoDI	GTCTC	3 cut(s)	32, 601, 695
BfaI	CTAG	6 cut(s)	288, 348, 446, 800, 1031, 1070
BfmI	CTRYAG	2 cut(s)	568, 1077
BisI	GCNGC	9 cut(s)	111, 162, 219, 514, 975, 1074, 1077, 1080, 1272
BlsI	GCNGC	9 cut(s)	112, 163, 220, 515, 976, 1075, 1078, 1081, 1273
BmcAI	AGTACT	1 cut(s)	1252
Bme18I	GGWCC	3 cut(s)	53, 229, 673
BmgT120I	GGNCC	4 cut(s)	53, 229, 613, 673
BmiI	GGNNCC	3 cut(s)	7, 73, 279
BmrI	ACTGGG	1 cut(s)	597
BmsI	GCATC	2 cut(s)	148, 397
BmtI	GCTAGC	1 cut(s)	1073
BmuI	ACTGGG	1 cut(s)	597
BpuEI	CTTGAG	3 cut(s)	953, 1016, 1165
BsaBI	GATNNNNATC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	9, 49
Bsc4I	CCNNNNNNNGG	5 cut(s)	207, 835, 892, 1140, 1207
Bse1I	ACTGG	3 cut(s)	603, 665, 1222
Bse3DI	GCAATG	2 cut(s)	242, 1273
Bse8I	GATNNNNATC	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	9, 49
BseGI	GGATG	4 cut(s)	400, 468, 478, 703
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	5 cut(s)	207, 835, 892, 1140, 1207
BseMI	GCAATG	2 cut(s)	242, 1273
BseMII	CTCAG	8 cut(s)	243, 317, 544, 570, 992, 1109, 1170, 1281
BseNI	ACTGG	3 cut(s)	603, 665, 1222
BseRI	GAGGAG	3 cut(s)	482, 830, 973
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	7 cut(s)	205, 500, 961, 1060, 1063, 1091, 1258
BseYI	CCCAGC	1 cut(s)	615
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	37, 614
BsiHKAI	GWGCWC	1 cut(s)	332
BslFI	GGGAC	2 cut(s)	204, 812
BslI	CCNNNNNNNGG	5 cut(s)	207, 835, 892, 1140, 1207
BsmAI	GTCTC	3 cut(s)	32, 601, 695
BsmBI	CGTCTC	1 cut(s)	695
BsmFI	GGGAC	2 cut(s)	204, 812
BsmI	GAATGC	1 cut(s)	1181
BsnI	GGCC	2 cut(s)	37, 614
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	99, 332
Bsp143I	GATC	4 cut(s)	307, 369, 487, 523
BspACI	CCGC	3 cut(s)	110, 161, 1092
BspANI	GGCC	2 cut(s)	37, 614
BspCNI	CTCAG	8 cut(s)	244, 318, 543, 571, 991, 1108, 1169, 1282
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	3 cut(s)	7, 73, 279
BspMAI	CTGCAG	1 cut(s)	1081
BspOI	GCTAGC	1 cut(s)	1073
BspPI	GGATC	2 cut(s)	482, 531
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	2 cut(s)	110, 1094
BsrDI	GCAATG	2 cut(s)	242, 1273
BsrI	ACTGG	3 cut(s)	603, 665, 1222
BssECI	CCNNGG	2 cut(s)	9, 49
BssMI	GATC	4 cut(s)	307, 369, 487, 523
BssNAI	GTATAC	1 cut(s)	1146
BssT1I	CCWWGG	2 cut(s)	9, 49
Bst1107I	GTATAC	1 cut(s)	1146
Bst4CI	ACNGT	4 cut(s)	340, 365, 389, 1250
BstC8I	GCNNGC	3 cut(s)	39, 805, 1071
BstF5I	GGATG	4 cut(s)	400, 468, 478, 703
BstKTI	GATC	4 cut(s)	310, 372, 490, 526
BstMAI	GTCTC	3 cut(s)	32, 601, 695
BstMBI	GATC	4 cut(s)	307, 369, 487, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	1079, 1134, 1277, 1286
BstSFI	CTRYAG	2 cut(s)	568, 1077
BstSLI	GKGCMC	1 cut(s)	99
BstV1I	GCAGC	7 cut(s)	205, 500, 961, 1060, 1063, 1091, 1258
BstX2I	RGATCY	1 cut(s)	487
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	487
BstZ17I	GTATAC	1 cut(s)	1146
BsuRI	GGCC	2 cut(s)	37, 614
BtsCI	GGATG	4 cut(s)	400, 468, 478, 703
BtsI	GCAGTG	1 cut(s)	1127
BtsIMutI	CAGTG	4 cut(s)	394, 538, 1103, 1127
Cac8I	GCNNGC	3 cut(s)	39, 805, 1071
CciI	TCATGA	1 cut(s)	954
Cfr13I	GGNCC	4 cut(s)	53, 229, 613, 673
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	3 cut(s)	544, 1246, 1251
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	4 cut(s)	610, 793, 892, 955
CviQI	GTAC	3 cut(s)	544, 1246, 1251
DpnI	GATC	4 cut(s)	309, 371, 489, 525
DpnII	GATC	4 cut(s)	307, 369, 487, 523
Ecl136II	GAGCTC	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	9, 49
Eco147I	AGGCCT	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	855
Eco47I	GGWCC	3 cut(s)	53, 229, 673
Eco53kI	GAGCTC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	755
EcoICRI	GAGCTC	1 cut(s)	330
EcoRV	GATATC	1 cut(s)	855
EcoT14I	CCWWGG	2 cut(s)	9, 49
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	2 cut(s)	9, 49
Esp3I	CGTCTC	1 cut(s)	695
FaeI	CATG	4 cut(s)	613, 796, 895, 958
FalI	AAGNNNNNCTT	6 cut(s)	130, 162, 870, 902, 1152, 1184
FaqI	GGGAC	2 cut(s)	204, 812
FatI	CATG	4 cut(s)	609, 792, 891, 954
FauNDI	CATATG	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	1145
Fnu4HI	GCNGC	9 cut(s)	111, 162, 219, 514, 975, 1074, 1077, 1080, 1272
FokI	GGATG	4 cut(s)	407, 475, 485, 710
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	9 cut(s)	111, 162, 219, 514, 975, 1074, 1077, 1080, 1272
FspBI	CTAG	6 cut(s)	288, 348, 446, 800, 1031, 1070
GluI	GCNGC	9 cut(s)	111, 162, 219, 514, 975, 1074, 1077, 1080, 1272
GsaI	CCCAGC	1 cut(s)	619
HaeIII	GGCC	2 cut(s)	37, 614
HgaI	GACGC	1 cut(s)	734
Hin1II	CATG	4 cut(s)	613, 796, 895, 958
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HindIII	AAGCTT	2 cut(s)	767, 992
HinfI	GANTC	7 cut(s)	248, 401, 479, 583, 735, 963, 1303
HphI	GGTGA	3 cut(s)	118, 179, 706
Hpy166II	GTNNAC	4 cut(s)	361, 676, 910, 1146
Hpy188I	TCNGA	9 cut(s)	253, 406, 484, 761, 852, 859, 985, 1159, 1206
Hpy188III	TCNNGA	4 cut(s)	311, 955, 1172, 1300
Hpy8I	GTNNAC	4 cut(s)	361, 676, 910, 1146
HpyAV	CCTTC	3 cut(s)	79, 1018, 1201
HpyCH4III	ACNGT	4 cut(s)	340, 365, 389, 1250
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	7 cut(s)	41, 221, 516, 563, 807, 1079, 1237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1079, 1134, 1277, 1286
HpySE526I	ACGT	1 cut(s)	704
Hsp92II	CATG	4 cut(s)	613, 796, 895, 958
Kzo9I	GATC	4 cut(s)	307, 369, 487, 523
LmnI	GCTCC	1 cut(s)	1125
Lsp1109I	GCAGC	7 cut(s)	205, 500, 961, 1060, 1063, 1091, 1258
LweI	GCATC	2 cut(s)	148, 397
MaeI	CTAG	6 cut(s)	288, 348, 446, 800, 1031, 1070
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	6 cut(s)	265, 605, 784, 795, 915, 1192
MalI	GATC	4 cut(s)	309, 371, 489, 525
MbiI	CCGCTC	2 cut(s)	110, 1094
MboI	GATC	4 cut(s)	307, 369, 487, 523
MboII	GAAGA	6 cut(s)	410, 488, 497, 649, 1003, 1172
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	2 cut(s)	99, 332
MluCI	AATT	6 cut(s)	130, 176, 315, 920, 1083, 1150
MseI	TTAA	4 cut(s)	318, 519, 630, 1109
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	3 cut(s)	513, 775, 1289
Mva1269I	GAATGC	1 cut(s)	1181
MwoI	GCNNNNNNNGC	4 cut(s)	1079, 1134, 1277, 1286
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	4 cut(s)	307, 369, 487, 523
NheI	GCTAGC	1 cut(s)	1069
NlaIII	CATG	4 cut(s)	613, 796, 895, 958
NlaIV	GGNNCC	3 cut(s)	7, 73, 279
NmuCI	GTSAC	2 cut(s)	265, 784
PagI	TCATGA	1 cut(s)	954
PceI	AGGCCT	1 cut(s)	37
PctI	GAATGC	1 cut(s)	1181
PfeI	GAWTC	7 cut(s)	248, 401, 479, 583, 735, 963, 1303
PflMI	CCANNNNNTGG	1 cut(s)	1140
PkrI	GCNGC	9 cut(s)	112, 163, 220, 515, 976, 1075, 1078, 1081, 1273
PshBI	ATTAAT	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	615
PspN4I	GGNNCC	3 cut(s)	7, 73, 279
PspPI	GGNCC	4 cut(s)	53, 229, 613, 673
PstI	CTGCAG	1 cut(s)	1081
PsuI	RGATCY	1 cut(s)	487
PvuII	CAGCTG	3 cut(s)	513, 775, 1289
RsaI	GTAC	3 cut(s)	545, 1247, 1252
RsaNI	GTAC	3 cut(s)	544, 1246, 1251
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	318, 519, 630, 1109
SatI	GCNGC	9 cut(s)	111, 162, 219, 514, 975, 1074, 1077, 1080, 1272
Sau3AI	GATC	4 cut(s)	307, 369, 487, 523
Sau96I	GGNCC	4 cut(s)	53, 229, 613, 673
ScaI	AGTACT	1 cut(s)	1252
SduI	GDGCHC	2 cut(s)	99, 332
SfaNI	GCATC	2 cut(s)	148, 397
SfcI	CTRYAG	2 cut(s)	568, 1077
SinI	GGWCC	3 cut(s)	53, 229, 673
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	3 cut(s)	968, 995, 1180
SmoI	CTYRAG	3 cut(s)	968, 995, 1180
Sse9I	AATT	6 cut(s)	130, 176, 315, 920, 1083, 1150
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	3 cut(s)	110, 161, 1092
SspMI	CTAG	6 cut(s)	288, 348, 446, 800, 1031, 1070
SstI	GAGCTC	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	9, 49
TaaI	ACNGT	4 cut(s)	340, 365, 389, 1250
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	2 cut(s)	106, 657
TasI	AATT	6 cut(s)	130, 176, 315, 920, 1083, 1150
TatI	WGTACW	3 cut(s)	543, 1245, 1250
TauI	GCSGC	2 cut(s)	113, 164
TfiI	GAWTC	7 cut(s)	248, 401, 479, 583, 735, 963, 1303
Tru1I	TTAA	4 cut(s)	318, 519, 630, 1109
Tru9I	TTAA	4 cut(s)	318, 519, 630, 1109
TscAI	CASTG	4 cut(s)	394, 538, 1103, 1127
TseFI	GTSAC	2 cut(s)	265, 784
TseI	GCWGC	7 cut(s)	218, 513, 974, 1073, 1076, 1079, 1271
Tsp45I	GTSAC	2 cut(s)	265, 784
TspDTI	ATGAA	5 cut(s)	411, 489, 943, 1056, 1179
TspRI	CASTG	4 cut(s)	394, 538, 1103, 1127
Van91I	CCANNNNNTGG	1 cut(s)	1140
VpaK11BI	GGWCC	3 cut(s)	53, 229, 673
VspI	ATTAAT	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	1145
XspI	CTAG	6 cut(s)	288, 348, 446, 800, 1031, 1070
ZrmI	AGTACT	1 cut(s)	1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.