Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009019

Physical Location & Seq

Genomic Coordinates Reverse (-)

22405239 .. 22408395

Gene Structure 3157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1139200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTCCATAACATCACCACAAGAGAATGTCCTAGGTTTAAAAGATGTTGCGGAATGTAAGAAAAATGTGCAAGATCTGCTACATAGACCAGTGACAAGGAGGTTTGCGCAATTGCTTCAGCAGCACCCAAAGGCTGTGGAGGATGTGGATCAGGAAGCTCAGAAACTGAGCTCATATACTGCCAATTCTAGTGGTCTGGTGGATTGCGAAATTATAGATGTGGAGAATATTGAGGATGAGGCTTGTGATGCTCATGTGCCAATGTTTGTTAAGCACACTGAAGCTATGCTAGATGAAATTGATAGGATGGAAGAGGATGAGAATCTGGAGGATGAGGACCCCATTATGGATATCGACAGCAGCAGCTCGAAGGATCCGCTTAATGTTGTTGAGTACATAGATGACATCTATGCTCACTACAGGAAATCTGAGAATTCAAGCTCTGTCTCCCCAAGTTACATGGCTCACCAACCTGACATCAACGAGAAAATGAGGGCGATTCTCATTGACTGGCTTATCGAGGTCCACTACAAGTTTGAGCTTATGGACGAGACACTATTCCTTACAGTAAATCTTATAGACAGGTTCCTTGAGCGCCAAACAGTGATCAGAAAGAAGCTTCAGTTGGTTGGTGTGACTGCCATGCTCCTAGCTTGCAAGTATGAGGAGGTTTCTGTCCCAATTGTGGAGGATTTTGTTCTGATATCAGACAAGGCATATTCAAGGAAAGATGTGCTTGATATGGAGAAATCAATGGTGAACAGCTTACAATTCAACTTCTCTGTTCCTACCGTGTATGTGTTCATGAGGCGGTTCCTCAAGGCAGCTCAATCAGATAAAAACCTTGAGTTTCTGTCCTTCTTCTTCATTGAGCTATGCCTGGTGGAGTACGAAATGCTCAGGTTCCCCCCTTCTATGCTAGCCGCTGCCGCAATTTATACTGCTCGGTGCACTCTGTCCCGGTTCAAGAAATGGAGCCAGACCAGCGAGTGGTATACAAATTACTCAGAAGATGAACTCCTAGAATGCTCGAGGATGATGGTTACTTTTCATCAGAAGGCTGAAACCGCGAAACTGACCGGAGTGCACAGGAAGTACAGCACACAGAAGTTTGGCTATGCAGCTAAAGCTCAACCAGCTGAGTTCCTCTTGGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

387

Amino Acids

44.7

Weight (kDa)

4.87

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	135 - 260	1.3e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	263 - 379	3.9e-39	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20610 AT1G76310 AT1G76310 AT1G76310 AT1G76310
fragaria_vesca	FvH4_2g16590
malus_domestica	MD05G1134100.v1.1 MD10G1139200.v1.1
prunus_persica	Prupe.8G177900_v2.0.a1
pyrus_communis	pycom05g13080 pycom10g11830
rosa_chinensis	RchiOBHm_Chr6g0280651
rosa_laevigata	RLG00000013039
rosa_multiflora	Rmu_co8479241.1_g000001 Rmu_sc0000976.1_g000005
rosa_roxburghii	Rroxscaffold_7G00187790
rosa_rugosa	Rorug06G0133400 Rorug06G0133400
rosa_samantha	Rh6AG246000 Rh6BG248300 Rh6CG249600
rosa_wichuraiana	Rw6G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	108
AccB7I	CCANNNNNTGG	1 cut(s)	990
AccI	GTMKAC	1 cut(s)	995
AccII	CGCG	1 cut(s)	1070
AciI	CCGC	6 cut(s)	50, 377, 811, 924, 930, 1068
AclWI	GGATC	3 cut(s)	156, 368, 381
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	3 cut(s)	101, 300, 605
AfaI	GTAC	3 cut(s)	395, 890, 1097
AfiI	CCNNNNNNNGG	3 cut(s)	346, 685, 990
AgsI	TTSAA	4 cut(s)	438, 723, 775, 967
AjnI	CCWGG	1 cut(s)	879
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
Alw21I	GWGCWC	3 cut(s)	173, 953, 1089
Alw26I	GTCTC	2 cut(s)	451, 545
Alw44I	GTGCAC	2 cut(s)	949, 1085
AlwI	GGATC	3 cut(s)	156, 368, 381
AlwNI	CAGNNNCTG	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	1030
ApaLI	GTGCAC	2 cut(s)	949, 1085
ApeKI	GCWGC	6 cut(s)	121, 360, 363, 824, 926, 1121
ApoI	RAATTY	1 cut(s)	433
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	109, 597
AspS9I	GGNCC	2 cut(s)	337, 523
AsuC2I	CCSGG	1 cut(s)	961
AsuHPI	GGTGA	3 cut(s)	6, 458, 769
AsuNHI	GCTAGC	1 cut(s)	919
AvaI	CYCGRG	1 cut(s)	1030
AvaII	GGWCC	2 cut(s)	337, 523
AvrII	CCTAGG	1 cut(s)	31
BaeGI	GKGCMC	2 cut(s)	953, 1089
BamHI	GGATCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	173
Bbv12I	GWGCWC	3 cut(s)	173, 953, 1089
BbvI	GCAGC	6 cut(s)	133, 372, 375, 836, 913, 1133
BccI	CCATC	2 cut(s)	301, 1033
BciT130I	CCWGG	1 cut(s)	881
BclI	TGATCA	1 cut(s)	606
BcnI	CCSGG	1 cut(s)	961
BcoDI	GTCTC	2 cut(s)	451, 545
BfaI	CTAG	6 cut(s)	32, 189, 290, 650, 920, 1022
BfmI	CTRYAG	1 cut(s)	418
BfoI	RGCGCY	1 cut(s)	598
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	8 cut(s)	122, 361, 364, 825, 924, 927, 930, 1122
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	8 cut(s)	123, 362, 365, 826, 925, 928, 931, 1123
Bme1390I	CCNGG	2 cut(s)	881, 961
Bme18I	GGWCC	2 cut(s)	337, 523
BmeT110I	CYCGRG	1 cut(s)	1030
BmgT120I	GGNCC	2 cut(s)	337, 523
BmiI	GGNNCC	6 cut(s)	339, 375, 587, 815, 905, 977
BmrFI	CCNGG	2 cut(s)	881, 961
BmsI	GCATC	1 cut(s)	238
BmtI	GCTAGC	1 cut(s)	923
BpmI	CTGGAG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	899
BpuEI	CTTGAG	3 cut(s)	611, 803, 866
BpuMI	CCSGG	1 cut(s)	961
BsaBI	GATNNNNATC	2 cut(s)	147, 321
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	1079
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 685, 990
Bse1I	ACTGG	2 cut(s)	89, 515
Bse8I	GATNNNNATC	2 cut(s)	147, 321
BseBI	CCWGG	1 cut(s)	881
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	6 cut(s)	148, 241, 312, 322, 337, 1041
BseJI	GATNNNNATC	2 cut(s)	147, 321
BseLI	CCNNNNNNNGG	3 cut(s)	346, 685, 990
BseMII	CTCAG	6 cut(s)	158, 173, 420, 913, 1020, 1131
BseNI	ACTGG	2 cut(s)	89, 515
BseRI	GAGGAG	1 cut(s)	680
BseSI	GKGCMC	2 cut(s)	953, 1089
BseXI	GCAGC	6 cut(s)	133, 372, 375, 836, 913, 1133
Bsh1236I	CGCG	1 cut(s)	1070
BsiHKAI	GWGCWC	3 cut(s)	173, 953, 1089
BsiHKCI	CYCGRG	1 cut(s)	1030
BsiSI	CCGG	2 cut(s)	961, 1080
BslFI	GGGAC	2 cut(s)	662, 943
BslI	CCNNNNNNNGG	3 cut(s)	346, 685, 990
BsmAI	GTCTC	2 cut(s)	451, 545
BsmFI	GGGAC	2 cut(s)	662, 943
BsmI	GAATGC	1 cut(s)	1031
BsoBI	CYCGRG	1 cut(s)	1030
Bsp1286I	GDGCHC	3 cut(s)	173, 953, 1089
Bsp143I	GATC	5 cut(s)	73, 148, 373, 606, 1153
BspACI	CCGC	6 cut(s)	50, 377, 811, 924, 930, 1068
BspCNI	CTCAG	6 cut(s)	159, 172, 421, 912, 1019, 1132
BspFNI	CGCG	1 cut(s)	1070
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	6 cut(s)	339, 375, 587, 815, 905, 977
BspOI	GCTAGC	1 cut(s)	923
BspPI	GGATC	3 cut(s)	156, 368, 381
BsrI	ACTGG	2 cut(s)	89, 515
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	5 cut(s)	73, 148, 373, 606, 1153
BssNAI	GTATAC	1 cut(s)	996
BssT1I	CCWWGG	1 cut(s)	31
Bst1107I	GTATAC	1 cut(s)	996
Bst2UI	CCWGG	1 cut(s)	881
Bst4CI	ACNGT	3 cut(s)	568, 604, 793
Bst6I	CTCTTC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	655, 921
BstDEI	CTNAG	6 cut(s)	159, 167, 429, 899, 1006, 1140
BstF5I	GGATG	6 cut(s)	148, 241, 312, 322, 337, 1041
BstFNI	CGCG	1 cut(s)	1070
BstH2I	RGCGCY	1 cut(s)	598
BstHHI	GCGC	2 cut(s)	109, 597
BstKTI	GATC	5 cut(s)	76, 151, 376, 609, 1156
BstMAI	GTCTC	2 cut(s)	451, 545
BstMBI	GATC	5 cut(s)	73, 148, 373, 606, 1153
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 121, 248, 929, 984, 1067, 1127, 1136
BstNI	CCWGG	1 cut(s)	881
BstSCI	CCNGG	2 cut(s)	879, 959
BstSFI	CTRYAG	1 cut(s)	418
BstSLI	GKGCMC	2 cut(s)	953, 1089
BstUI	CGCG	1 cut(s)	1070
BstV1I	GCAGC	6 cut(s)	133, 372, 375, 836, 913, 1133
BstX2I	RGATCY	2 cut(s)	73, 373
BstYI	RGATCY	2 cut(s)	73, 373
BstZ17I	GTATAC	1 cut(s)	996
BtsCI	GGATG	6 cut(s)	148, 241, 312, 322, 337, 1041
BtsIMutI	CAGTG	4 cut(s)	96, 276, 609, 1156
Cac8I	GCNNGC	2 cut(s)	655, 921
CaiI	CAGNNNCTG	1 cut(s)	166
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	2 cut(s)	109, 597
Cfr13I	GGNCC	2 cut(s)	337, 523
Csp6I	GTAC	3 cut(s)	394, 889, 1096
CspCI	CAANNNNNGTGG	4 cut(s)	117, 152, 172, 207
CviAII	CATG	4 cut(s)	254, 460, 643, 805
CviQI	GTAC	3 cut(s)	394, 889, 1096
DdeI	CTNAG	6 cut(s)	159, 167, 429, 899, 1006, 1140
DpnI	GATC	5 cut(s)	75, 150, 375, 608, 1155
DpnII	GATC	5 cut(s)	73, 148, 373, 606, 1153
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	173
Eco32I	GATATC	2 cut(s)	352, 705
Eco47I	GGWCC	2 cut(s)	337, 523
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	3 cut(s)	101, 300, 605
Eco88I	CYCGRG	1 cut(s)	1030
EcoICRI	GAGCTC	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	879
EcoRV	GATATC	2 cut(s)	352, 705
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	4 cut(s)	257, 463, 646, 808
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FaqI	GGGAC	2 cut(s)	662, 943
FatI	CATG	4 cut(s)	253, 459, 642, 804
FbaI	TGATCA	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	995
Fnu4HI	GCNGC	8 cut(s)	122, 361, 364, 825, 924, 927, 930, 1122
FokI	GGATG	6 cut(s)	155, 248, 319, 329, 344, 1048
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	8 cut(s)	122, 361, 364, 825, 924, 927, 930, 1122
FspBI	CTAG	6 cut(s)	32, 189, 290, 650, 920, 1022
FspI	TGCGCA	1 cut(s)	108
GlaI	GCGC	2 cut(s)	108, 596
GluI	GCNGC	8 cut(s)	122, 361, 364, 825, 924, 927, 930, 1122
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	598
HapII	CCGG	2 cut(s)	961, 1080
HhaI	GCGC	2 cut(s)	109, 597
Hin1II	CATG	4 cut(s)	257, 463, 646, 808
Hin6I	GCGC	2 cut(s)	107, 595
HinP1I	GCGC	2 cut(s)	107, 595
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	2 cut(s)	322, 499
HpaII	CCGG	2 cut(s)	961, 1080
HphI	GGTGA	3 cut(s)	6, 458, 769
Hpy166II	GTNNAC	5 cut(s)	526, 760, 951, 996, 1087
Hpy188I	TCNGA	8 cut(s)	162, 430, 611, 702, 709, 835, 1009, 1056
Hpy188III	TCNNGA	4 cut(s)	152, 326, 805, 967
Hpy8I	GTNNAC	5 cut(s)	526, 760, 951, 996, 1087
HpyAV	CCTTC	4 cut(s)	364, 868, 921, 1051
HpyCH4III	ACNGT	3 cut(s)	568, 604, 793
HpyCH4V	TGCA	5 cut(s)	70, 657, 951, 1087, 1121
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 121, 248, 929, 984, 1067, 1127, 1136
HpyF3I	CTNAG	6 cut(s)	159, 167, 429, 899, 1006, 1140
Hsp92II	CATG	4 cut(s)	257, 463, 646, 808
HspAI	GCGC	2 cut(s)	107, 595
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	5 cut(s)	73, 148, 373, 606, 1153
LmnI	GCTCC	2 cut(s)	651, 975
Lsp1109I	GCAGC	6 cut(s)	133, 372, 375, 836, 913, 1133
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	6 cut(s)	32, 189, 290, 650, 920, 1022
MaeIII	GTNAC	4 cut(s)	91, 455, 634, 1042
MalI	GATC	5 cut(s)	75, 150, 375, 608, 1155
MboI	GATC	5 cut(s)	73, 148, 373, 606, 1153
MboII	GAAGA	4 cut(s)	323, 853, 856, 1022
MfeI	CAATTG	2 cut(s)	110, 681
MflI	RGATCY	2 cut(s)	73, 373
MhlI	GDGCHC	3 cut(s)	173, 953, 1089
MluCI	AATT	9 cut(s)	110, 184, 210, 297, 433, 681, 770, 933, 1000
MseI	TTAA	3 cut(s)	38, 270, 381
MspA1I	CMGCKG	2 cut(s)	926, 1139
MspI	CCGG	2 cut(s)	961, 1080
MspR9I	CCNGG	2 cut(s)	881, 961
MunI	CAATTG	2 cut(s)	110, 681
Mva1269I	GAATGC	1 cut(s)	1031
MvaI	CCWGG	1 cut(s)	881
MvnI	CGCG	1 cut(s)	1070
MwoI	GCNNNNNNNGC	8 cut(s)	76, 121, 248, 929, 984, 1067, 1127, 1136
NciI	CCSGG	1 cut(s)	961
NdeII	GATC	5 cut(s)	73, 148, 373, 606, 1153
NheI	GCTAGC	1 cut(s)	919
NlaIII	CATG	4 cut(s)	257, 463, 646, 808
NlaIV	GGNNCC	6 cut(s)	339, 375, 587, 815, 905, 977
NmuCI	GTSAC	2 cut(s)	91, 634
NsbI	TGCGCA	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	1030
PagI	TCATGA	1 cut(s)	804
PctI	GAATGC	1 cut(s)	1031
PfeI	GAWTC	2 cut(s)	322, 499
PflMI	CCANNNNNTGG	1 cut(s)	990
PkrI	GCNGC	8 cut(s)	123, 362, 365, 826, 925, 928, 931, 1123
PpuMI	RGGWCCY	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	879
PspGI	CCWGG	1 cut(s)	879
PspN4I	GGNNCC	6 cut(s)	339, 375, 587, 815, 905, 977
PspPI	GGNCC	2 cut(s)	337, 523
PspPPI	RGGWCCY	1 cut(s)	337
PspXI	VCTCGAGB	1 cut(s)	1030
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	73, 373
PvuII	CAGCTG	1 cut(s)	1139
RsaI	GTAC	3 cut(s)	395, 890, 1097
RsaNI	GTAC	3 cut(s)	394, 889, 1096
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	38, 270, 381
SatI	GCNGC	8 cut(s)	122, 361, 364, 825, 924, 927, 930, 1122
Sau3AI	GATC	5 cut(s)	73, 148, 373, 606, 1153
Sau96I	GGNCC	2 cut(s)	337, 523
ScrFI	CCNGG	2 cut(s)	881, 961
SduI	GDGCHC	3 cut(s)	173, 953, 1089
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	1030
SinI	GGWCC	2 cut(s)	337, 523
SlaI	CTCGAG	1 cut(s)	1030
SmlI	CTYRAG	4 cut(s)	590, 818, 845, 1030
SmoI	CTYRAG	4 cut(s)	590, 818, 845, 1030
Sse9I	AATT	9 cut(s)	110, 184, 210, 297, 433, 681, 770, 933, 1000
SsiI	CCGC	6 cut(s)	50, 377, 811, 924, 930, 1068
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	6 cut(s)	32, 189, 290, 650, 920, 1022
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	879, 959
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	568, 604, 793
TaqI	TCGA	4 cut(s)	354, 368, 519, 1031
TasI	AATT	9 cut(s)	110, 184, 210, 297, 433, 681, 770, 933, 1000
TatI	WGTACW	2 cut(s)	393, 1095
TauI	GCSGC	2 cut(s)	926, 932
TfiI	GAWTC	2 cut(s)	322, 499
Tru1I	TTAA	3 cut(s)	38, 270, 381
Tru9I	TTAA	3 cut(s)	38, 270, 381
TscAI	CASTG	3 cut(s)	96, 283, 609
TseFI	GTSAC	2 cut(s)	91, 634
TseI	GCWGC	6 cut(s)	121, 360, 363, 824, 926, 1121
Tsp45I	GTSAC	2 cut(s)	91, 634
TspDTI	ATGAA	5 cut(s)	309, 793, 856, 1029, 1040
TspRI	CASTG	3 cut(s)	96, 283, 609
Van91I	CCANNNNNTGG	1 cut(s)	990
VneI	GTGCAC	2 cut(s)	949, 1085
VpaK11BI	GGWCC	2 cut(s)	337, 523
XapI	RAATTY	1 cut(s)	433
XhoI	CTCGAG	1 cut(s)	1030
XmaJI	CCTAGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	995
XspI	CTAG	6 cut(s)	32, 189, 290, 650, 920, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.