Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009019

Physical Location & Seq

Genomic Coordinates Reverse (-)

26256890 .. 26260759

Gene Structure 3870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1134100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTCCATAACATCACCAGAAAAGAATGTTCTAGATGCTGCGGAATGTAAGAAAAATGTGCCAGATCTGCCACATAGACCAGTGACAAGGAGGTTTGCACAATTGCTCCAGCAGCAGCCAAAGGAAACCAAGGAAGTGACTGTGAGTTCATTTGCTGCAAATCCGAAAGCTGTGCAGGACGTTAATCAGGAAGCTAAGAAACTGAGCTCGTATACTGCAAATTCTAGTGGTTTAGTGGATTGCGAAATTATAGATGTGGAGAACATTGAGGATGAGGCTTGTGATGCTCATGTACCAATGTTTGTTAAGCACACCGAAGCTATGCTAGATGAAATTGATAGGATGGAAGAGGATGAAACTCTGGAGGTTGAGGACCCCATTATGGATATCGACAGCAGCAGCTCAAAGGATCCGCTTAATGTTGTTGAGTACATAGATGACATCTATGCTCACTACAGGAAATCTGAGTCAAGCTCTGTCTCCCCAAGTTACATGGCTCACCAACCTGACATCAATGAGAAAATGAGGGCAATTCTCATTGACTGGCTTATTGAGGTCCACTACAAGTTTGAGCTTATGGATGAGACACTATTCCTTACTGTAAATCTTATAGACAGGTTCTTAGAGCGCCAAATGGTGATCAGAAAGAAGCTTCAGTTGGTTGGTGTGACAGCCATGCTACTAGCTTGCAAGTATGAGGAGGTTTCTGTCCCAATTGTGGAGGATTTTGTTCTGATATCAGATAAGGCATATTCACGGAAAGATGTGCTTGATATGGAGAAATCAATGGTGAACAGCTTACAATTCAACTTCTCTGTTCCTACCGTGTATGTGTTCATGAGGCGATTCCTCAAGGCAGCTCATTCAGAGAAAAAGCTTGAGCTTCTGTCCTTCTTCCTCATTGAGCTATGCCTGGTGGAGTACGAAATGCTCAGGTTCCCCCCTTCTATGCTAGCTGCTGCCGCAATTTATACTGCTCAGTGTACTCTGTCCCGGTTCAAGCAGTGGAGCAAGACTAGTGAGTGGTATACGAATTACTCAGAAGATGAACTCCTAGAATGCTCGAGGATGATGGTTACGTTTCATCAGAATGCTGAAACTGCGAAACTCACTGGAGTGCACCGGAAGTACAGCACATGGAAGTTCGGCTATGCAGCTAAAGCTCAACCAGCTGAGTTCCTCTTGGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

398

Amino Acids

45.78

Weight (kDa)

5.0

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	147 - 271	2.2e-47	Cyclin, N-terminal domain
Cyclin_C	PF02984	274 - 390	2.6e-37	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20610 AT1G76310 AT1G76310 AT1G76310 AT1G76310
fragaria_vesca	FvH4_2g16590
malus_domestica	MD05G1134100.v1.1 MD10G1139200.v1.1
prunus_persica	Prupe.8G177900_v2.0.a1
pyrus_communis	pycom05g13080 pycom10g11830
rosa_chinensis	RchiOBHm_Chr6g0280651
rosa_laevigata	RLG00000013039
rosa_multiflora	Rmu_co8479241.1_g000001 Rmu_sc0000976.1_g000005
rosa_roxburghii	Rroxscaffold_7G00187790
rosa_rugosa	Rorug06G0133400 Rorug06G0133400
rosa_samantha	Rh6AG246000 Rh6BG248300 Rh6CG249600
rosa_wichuraiana	Rw6G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	212, 1028
AciI	CCGC	3 cut(s)	41, 413, 963
AclWI	GGATC	2 cut(s)	404, 417
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	638
AfaI	GTAC	5 cut(s)	294, 431, 923, 985, 1130
AfiI	CCNNNNNNNGG	2 cut(s)	382, 718
AgsI	TTSAA	2 cut(s)	808, 1000
AhlI	ACTAGT	1 cut(s)	1016
AjnI	CCWGG	1 cut(s)	912
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AleI	CACNNNNGTG	1 cut(s)	1115
Alw21I	GWGCWC	2 cut(s)	209, 1122
Alw26I	GTCTC	2 cut(s)	484, 578
Alw44I	GTGCAC	1 cut(s)	1118
AlwI	GGATC	2 cut(s)	404, 417
Ama87I	CYCGRG	1 cut(s)	1063
ApaLI	GTGCAC	1 cut(s)	1118
ApoI	RAATTY	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	2 cut(s)	373, 556
AsuC2I	CCSGG	1 cut(s)	994
AsuHPI	GGTGA	4 cut(s)	6, 491, 649, 802
AsuNHI	GCTAGC	1 cut(s)	952
AvaI	CYCGRG	1 cut(s)	1063
AvaII	GGWCC	2 cut(s)	373, 556
BaeGI	GKGCMC	1 cut(s)	1122
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	209, 1122
BccI	CCATC	2 cut(s)	337, 1066
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BciT130I	CCWGG	1 cut(s)	914
BclI	TGATCA	1 cut(s)	639
BcnI	CCSGG	1 cut(s)	994
BcoDI	GTCTC	2 cut(s)	484, 578
BcuI	ACTAGT	1 cut(s)	1016
BfaI	CTAG	7 cut(s)	32, 225, 326, 683, 953, 1017, 1055
BfmI	CTRYAG	1 cut(s)	454
BfoI	RGCGCY	1 cut(s)	631
BglII	AGATCT	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	914, 994
Bme18I	GGWCC	2 cut(s)	373, 556
BmeT110I	CYCGRG	1 cut(s)	1063
BmgT120I	GGNCC	2 cut(s)	373, 556
BmiI	GGNNCC	3 cut(s)	375, 411, 938
BmrFI	CCNGG	2 cut(s)	914, 994
BmsI	GCATC	2 cut(s)	25, 274
BmtI	GCTAGC	1 cut(s)	956
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	3 cut(s)	92, 383, 1134
Bpu10I	CCTNAGC	1 cut(s)	932
BpuEI	CTTGAG	2 cut(s)	836, 899
BpuMI	CCSGG	1 cut(s)	994
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	1122
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 718
Bse1I	ACTGG	3 cut(s)	80, 548, 1117
BseBI	CCWGG	1 cut(s)	914
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	5 cut(s)	277, 348, 358, 586, 1074
BseLI	CCNNNNNNNGG	2 cut(s)	382, 718
BseMII	CTCAG	6 cut(s)	194, 456, 946, 992, 1053, 1164
BseNI	ACTGG	3 cut(s)	80, 548, 1117
BseRI	GAGGAG	1 cut(s)	713
BseSI	GKGCMC	1 cut(s)	1122
BsgI	GTGCAG	1 cut(s)	194
BsiHKAI	GWGCWC	2 cut(s)	209, 1122
BsiHKCI	CYCGRG	1 cut(s)	1063
BsiSI	CCGG	2 cut(s)	994, 1123
BslFI	GGGAC	2 cut(s)	695, 976
BslI	CCNNNNNNNGG	2 cut(s)	382, 718
BsmAI	GTCTC	2 cut(s)	484, 578
BsmFI	GGGAC	2 cut(s)	695, 976
BsmI	GAATGC	2 cut(s)	1064, 1096
BsoBI	CYCGRG	1 cut(s)	1063
Bsp1286I	GDGCHC	2 cut(s)	209, 1122
Bsp143I	GATC	4 cut(s)	64, 409, 639, 1186
BspACI	CCGC	3 cut(s)	41, 413, 963
BspCNI	CTCAG	6 cut(s)	195, 457, 945, 991, 1052, 1165
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	3 cut(s)	375, 411, 938
BspOI	GCTAGC	1 cut(s)	956
BspPI	GGATC	2 cut(s)	404, 417
BsrI	ACTGG	3 cut(s)	80, 548, 1117
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	64, 409, 639, 1186
BssNAI	GTATAC	2 cut(s)	213, 1029
BssT1I	CCWWGG	1 cut(s)	129
Bst1107I	GTATAC	2 cut(s)	213, 1029
Bst2UI	CCWGG	1 cut(s)	914
Bst4CI	ACNGT	3 cut(s)	142, 601, 826
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	688, 954
BstDEI	CTNAG	8 cut(s)	195, 203, 465, 622, 932, 978, 1039, 1173
BstF5I	GGATG	5 cut(s)	277, 348, 358, 586, 1074
BstH2I	RGCGCY	1 cut(s)	631
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	4 cut(s)	67, 412, 642, 1189
BstMAI	GTCTC	2 cut(s)	484, 578
BstMBI	GATC	4 cut(s)	64, 409, 639, 1186
BstMWI	GCNNNNNNNGC	7 cut(s)	67, 112, 284, 962, 1100, 1160, 1169
BstNI	CCWGG	1 cut(s)	914
BstSCI	CCNGG	2 cut(s)	912, 992
BstSFI	CTRYAG	1 cut(s)	454
BstSLI	GKGCMC	1 cut(s)	1122
BstX2I	RGATCY	2 cut(s)	64, 409
BstYI	RGATCY	2 cut(s)	64, 409
BstZ17I	GTATAC	2 cut(s)	213, 1029
BtsCI	GGATG	5 cut(s)	277, 348, 358, 586, 1074
BtsI	GCAGTG	1 cut(s)	1010
BtsIMutI	CAGTG	5 cut(s)	87, 986, 1010, 1110, 1189
Cac8I	GCNNGC	2 cut(s)	688, 954
CciI	TCATGA	1 cut(s)	837
CfoI	GCGC	1 cut(s)	630
Cfr13I	GGNCC	2 cut(s)	373, 556
Csp6I	GTAC	5 cut(s)	293, 430, 922, 984, 1129
CviAII	CATG	5 cut(s)	290, 493, 676, 838, 1137
CviQI	GTAC	5 cut(s)	293, 430, 922, 984, 1129
DdeI	CTNAG	8 cut(s)	195, 203, 465, 622, 932, 978, 1039, 1173
DpnI	GATC	4 cut(s)	66, 411, 641, 1188
DpnII	GATC	4 cut(s)	64, 409, 639, 1186
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	209
Eco32I	GATATC	2 cut(s)	388, 738
Eco47I	GGWCC	2 cut(s)	373, 556
Eco53kI	GAGCTC	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	638
Eco88I	CYCGRG	1 cut(s)	1063
EcoICRI	GAGCTC	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	912
EcoRV	GATATC	2 cut(s)	388, 738
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	5 cut(s)	293, 496, 679, 841, 1140
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	2 cut(s)	695, 976
FatI	CATG	5 cut(s)	289, 492, 675, 837, 1136
FbaI	TGATCA	1 cut(s)	639
FblI	GTMKAC	2 cut(s)	212, 1028
FokI	GGATG	5 cut(s)	284, 355, 365, 593, 1081
FriOI	GRGCYC	1 cut(s)	209
FspBI	CTAG	7 cut(s)	32, 225, 326, 683, 953, 1017, 1055
GlaI	GCGC	1 cut(s)	629
GsuI	CTGGAG	3 cut(s)	92, 383, 1134
HaeII	RGCGCY	1 cut(s)	631
HapII	CCGG	2 cut(s)	994, 1123
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	5 cut(s)	293, 496, 679, 841, 1140
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HindIII	AAGCTT	2 cut(s)	650, 875
HinfI	GANTC	2 cut(s)	467, 846
HpaII	CCGG	2 cut(s)	994, 1123
HphI	GGTGA	4 cut(s)	6, 491, 649, 802
Hpy166II	GTNNAC	6 cut(s)	213, 559, 793, 984, 1029, 1120
Hpy188I	TCNGA	8 cut(s)	165, 466, 644, 735, 742, 868, 1042, 1089
Hpy188III	TCNNGA	4 cut(s)	32, 188, 362, 838
Hpy8I	GTNNAC	6 cut(s)	213, 559, 793, 984, 1029, 1120
HpyAV	CCTTC	2 cut(s)	901, 954
HpyCH4III	ACNGT	3 cut(s)	142, 601, 826
HpyCH4IV	ACGT	2 cut(s)	180, 1079
HpyCH4V	TGCA	7 cut(s)	98, 158, 175, 218, 690, 1120, 1154
HpyF10VI	GCNNNNNNNGC	7 cut(s)	67, 112, 284, 962, 1100, 1160, 1169
HpyF3I	CTNAG	8 cut(s)	195, 203, 465, 622, 932, 978, 1039, 1173
HpySE526I	ACGT	2 cut(s)	180, 1079
Hsp92II	CATG	5 cut(s)	293, 496, 679, 841, 1140
HspAI	GCGC	1 cut(s)	628
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	64, 409, 639, 1186
LmnI	GCTCC	2 cut(s)	111, 1008
LweI	GCATC	2 cut(s)	25, 274
MaeI	CTAG	7 cut(s)	32, 225, 326, 683, 953, 1017, 1055
MaeII	ACGT	2 cut(s)	180, 1079
MaeIII	GTNAC	5 cut(s)	82, 136, 488, 667, 1075
MalI	GATC	4 cut(s)	66, 411, 641, 1188
MboI	GATC	4 cut(s)	64, 409, 639, 1186
MboII	GAAGA	3 cut(s)	359, 886, 1055
MfeI	CAATTG	2 cut(s)	101, 714
MflI	RGATCY	2 cut(s)	64, 409
MhlI	GDGCHC	2 cut(s)	209, 1122
MluCI	AATT	9 cut(s)	101, 220, 246, 333, 531, 714, 803, 966, 1033
MlyI	GAGTC	1 cut(s)	476
MseI	TTAA	3 cut(s)	183, 306, 417
MslI	CAYNNNNRTG	2 cut(s)	1089, 1115
MspA1I	CMGCKG	1 cut(s)	1172
MspI	CCGG	2 cut(s)	994, 1123
MspR9I	CCNGG	2 cut(s)	914, 994
MunI	CAATTG	2 cut(s)	101, 714
Mva1269I	GAATGC	2 cut(s)	1064, 1096
MvaI	CCWGG	1 cut(s)	914
MwoI	GCNNNNNNNGC	7 cut(s)	67, 112, 284, 962, 1100, 1160, 1169
NciI	CCSGG	1 cut(s)	994
NdeII	GATC	4 cut(s)	64, 409, 639, 1186
NheI	GCTAGC	1 cut(s)	952
NlaIII	CATG	5 cut(s)	293, 496, 679, 841, 1140
NlaIV	GGNNCC	3 cut(s)	375, 411, 938
NmuCI	GTSAC	3 cut(s)	82, 136, 667
OliI	CACNNNNGTG	1 cut(s)	1115
PaeR7I	CTCGAG	1 cut(s)	1063
PagI	TCATGA	1 cut(s)	837
PctI	GAATGC	2 cut(s)	1064, 1096
PfeI	GAWTC	1 cut(s)	846
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	912
PspGI	CCWGG	1 cut(s)	912
PspN4I	GGNNCC	3 cut(s)	375, 411, 938
PspPI	GGNCC	2 cut(s)	373, 556
PspPPI	RGGWCCY	1 cut(s)	373
PspXI	VCTCGAGB	1 cut(s)	1063
PsuI	RGATCY	2 cut(s)	64, 409
PvuII	CAGCTG	1 cut(s)	1172
RsaI	GTAC	5 cut(s)	294, 431, 923, 985, 1130
RsaNI	GTAC	5 cut(s)	293, 430, 922, 984, 1129
RseI	CAYNNNNRTG	2 cut(s)	1089, 1115
SacI	GAGCTC	1 cut(s)	209
SaqAI	TTAA	3 cut(s)	183, 306, 417
Sau3AI	GATC	4 cut(s)	64, 409, 639, 1186
Sau96I	GGNCC	2 cut(s)	373, 556
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	2 cut(s)	914, 994
SduI	GDGCHC	2 cut(s)	209, 1122
SfaNI	GCATC	2 cut(s)	25, 274
SfcI	CTRYAG	1 cut(s)	454
Sfr274I	CTCGAG	1 cut(s)	1063
SinI	GGWCC	2 cut(s)	373, 556
SlaI	CTCGAG	1 cut(s)	1063
SmiMI	CAYNNNNRTG	2 cut(s)	1089, 1115
SmlI	CTYRAG	3 cut(s)	851, 878, 1063
SmoI	CTYRAG	3 cut(s)	851, 878, 1063
SpeI	ACTAGT	1 cut(s)	1016
Sse9I	AATT	9 cut(s)	101, 220, 246, 333, 531, 714, 803, 966, 1033
SsiI	CCGC	3 cut(s)	41, 413, 963
SspMI	CTAG	7 cut(s)	32, 225, 326, 683, 953, 1017, 1055
SstI	GAGCTC	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	912, 992
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	142, 601, 826
TaiI	ACGT	2 cut(s)	183, 1082
TaqI	TCGA	2 cut(s)	390, 1064
TasI	AATT	9 cut(s)	101, 220, 246, 333, 531, 714, 803, 966, 1033
TatI	WGTACW	3 cut(s)	429, 983, 1128
TauI	GCSGC	1 cut(s)	965
TfiI	GAWTC	1 cut(s)	846
Tru1I	TTAA	3 cut(s)	183, 306, 417
Tru9I	TTAA	3 cut(s)	183, 306, 417
TscAI	CASTG	4 cut(s)	87, 986, 1010, 1117
TseFI	GTSAC	3 cut(s)	82, 136, 667
Tsp45I	GTSAC	3 cut(s)	82, 136, 667
TspDTI	ATGAA	6 cut(s)	138, 345, 369, 826, 1062, 1073
TspGWI	ACGGA	1 cut(s)	772
TspRI	CASTG	4 cut(s)	87, 986, 1010, 1117
VneI	GTGCAC	1 cut(s)	1118
VpaK11BI	GGWCC	2 cut(s)	373, 556
XapI	RAATTY	1 cut(s)	220
XbaI	TCTAGA	1 cut(s)	31
XhoI	CTCGAG	1 cut(s)	1063
XmiI	GTMKAC	2 cut(s)	212, 1028
XspI	CTAG	7 cut(s)	32, 225, 326, 683, 953, 1017, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.