Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009019

Physical Location & Seq

Genomic Coordinates Reverse (-)

45947885 .. 45951681

Gene Structure 3797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG248300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGTCCAGCGATGCCCAAAGGAGTCTGAGGAAGGCATTGTGACTACATTGCTTCCAAATCCTAGTGGCGTTAGGGACTGTGATCAGGAAATTAAGAAACTGAGCTCATCTACTGTCAATCCTAGTGGTCTTGTGGACTGTGAGATCATAGATGTGGAGGACAGTGAGGATGAAGATTCTGATGCTGTGCCAATGTATGTGAAGCACACAGAAGCTATGCTAGATGAGATTGATAGGATGGTATGTGTGTCTAGTACTTTATTTGATTGTCAAAATAAAGGGTTCCTTTTTAGTTCATTAGAAAACCAACAAGGTAGATATGGTGATGCATTACTGCAGGAGGAGGATGAAGAATCGGAAGATCCCATTATGGATATCGACACCAGCTGCGTGAAGGATCAACTCAGTGTTGTGGAGTACATAGATGACATCTATGCACACTACAGGAAAACTGAGAATCAAAGCTGTGTCTCCCCCCGTTACATGGCCCAGCAACCTGACATCAATGAGAAGATGAGGGCTATTCTTATTGACTGGCTTATTGAGGTCCACTACAAGTTTGAGCTTATGGATGAGACGTTATTCCTCACCATCAACCTTATAGACAGATTCTTAGAGCGTCAAGTGGTGGTCAGGAAGAAGCTTCAGCTGGTTGGTGTGACAGCCATGTTACTAGCCTGCAAGTATGAGGAGGTTTCTGTCCCAATCGTGGAGGATTTTGTTCTGATATCAGATAAGGCATATACTAGGAAAGATGTCCTTGACATGGAGAAATCAATGGTCAACAAGTTACAATTCAACTTTTCTGTTCCTACCCCATATGTGTTCATGAGGAGATTCCTCAAGGCTGCTCAGTCTGACAAAAAGCTTGAGCTTCTGTCCTTCTTCCTCATTGAGCTATGCCTGGTGGAGTATGAAATGCTAAAGTTTCCACCATCTCTGCTAGCTGCTGCAGCAATTTACACTGCTCAGTGTAGTCTTTCAAGGTTAAAGCAGTGGAGCAAAACCAGCGAGTGGTATACCAATTTCTCAGAAGATGAACTTCAAGAATGCTCAAGGTTGATGGTTACTTTCCATCAGAAGGCTGAAACTGGTAGGCTAACAGGAGTGCATAGGAAGTACAGTACTTGGAAATTTGGCTATGCTGCTAAAGCTGAACCAGCTGAGTTTCTCCTGAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

394

Amino Acids

45.43

Weight (kDa)

4.69

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	143 - 268	9.3e-50	Cyclin, N-terminal domain
Cyclin_C	PF02984	271 - 387	1.5e-37	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20610 AT1G76310 AT1G76310 AT1G76310 AT1G76310
fragaria_vesca	FvH4_2g16590
malus_domestica	MD05G1134100.v1.1 MD10G1139200.v1.1
prunus_persica	Prupe.8G177900_v2.0.a1
pyrus_communis	pycom05g13080 pycom10g11830
rosa_chinensis	RchiOBHm_Chr6g0280651
rosa_laevigata	RLG00000013039
rosa_multiflora	Rmu_co8479241.1_g000001 Rmu_sc0000976.1_g000005
rosa_roxburghii	Rroxscaffold_7G00187790
rosa_rugosa	Rorug06G0133400 Rorug06G0133400
rosa_samantha	Rh6AG246000 Rh6BG248300 Rh6CG249600
rosa_wichuraiana	Rw6G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1014
AccI	GTMKAC	1 cut(s)	1019
AclWI	GGATC	2 cut(s)	356, 405
AcsI	RAATTY	1 cut(s)	1133
AcuI	CTGAAG	1 cut(s)	629
AfaI	GTAC	4 cut(s)	256, 419, 1121, 1126
AfiI	CCNNNNNNNGG	5 cut(s)	484, 709, 766, 1014, 1081
AgsI	TTSAA	3 cut(s)	799, 984, 1046
AjnI	CCWGG	1 cut(s)	903
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	2 cut(s)	475, 569
AlwI	GGATC	2 cut(s)	356, 405
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	6 cut(s)	387, 848, 947, 950, 953, 1145
ApoI	RAATTY	1 cut(s)	1133
AspS9I	GGNCC	3 cut(s)	4, 487, 547
AsuHPI	GGTGA	2 cut(s)	335, 580
AsuNHI	GCTAGC	1 cut(s)	943
AvaII	GGWCC	2 cut(s)	4, 547
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	6 cut(s)	374, 835, 934, 937, 965, 1132
BccI	CCATC	5 cut(s)	232, 599, 943, 1057, 1083
BciT130I	CCWGG	1 cut(s)	905
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	475, 569
BfaI	CTAG	7 cut(s)	63, 123, 221, 252, 674, 747, 944
BfmI	CTRYAG	3 cut(s)	335, 442, 951
BisI	GCNGC	6 cut(s)	388, 849, 948, 951, 954, 1146
BlsI	GCNGC	6 cut(s)	389, 850, 949, 952, 955, 1147
BmcAI	AGTACT	2 cut(s)	256, 1126
Bme1390I	CCNGG	1 cut(s)	905
Bme18I	GGWCC	2 cut(s)	4, 547
BmgT120I	GGNCC	3 cut(s)	4, 487, 547
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	905
BmsI	GCATC	3 cut(s)	2, 172, 316
BmtI	GCTAGC	1 cut(s)	947
BpuEI	CTTGAG	3 cut(s)	827, 890, 1039
Bsc4I	CCNNNNNNNGG	5 cut(s)	484, 709, 766, 1014, 1081
Bse1I	ACTGG	2 cut(s)	539, 1096
Bse3DI	GCAATG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	905
BseGI	GGATG	4 cut(s)	175, 243, 352, 577
BseLI	CCNNNNNNNGG	5 cut(s)	484, 709, 766, 1014, 1081
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	8 cut(s)	18, 92, 418, 444, 866, 983, 1044, 1155
BseNI	ACTGG	2 cut(s)	539, 1096
BseRI	GAGGAG	3 cut(s)	356, 704, 847
BseXI	GCAGC	6 cut(s)	374, 835, 934, 937, 965, 1132
BseYI	CCCAGC	1 cut(s)	489
BshFI	GGCC	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	107
BslFI	GGGAC	2 cut(s)	89, 686
BslI	CCNNNNNNNGG	5 cut(s)	484, 709, 766, 1014, 1081
BsmAI	GTCTC	2 cut(s)	475, 569
BsmBI	CGTCTC	1 cut(s)	569
BsmFI	GGGAC	2 cut(s)	89, 686
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	82, 144, 361, 397
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	8 cut(s)	19, 93, 417, 445, 865, 982, 1043, 1156
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	1 cut(s)	284
BspMAI	CTGCAG	2 cut(s)	339, 955
BspOI	GCTAGC	1 cut(s)	947
BspPI	GGATC	2 cut(s)	356, 405
BsrDI	GCAATG	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	539, 1096
BssMI	GATC	4 cut(s)	82, 144, 361, 397
BssNAI	GTATAC	1 cut(s)	1020
Bst1107I	GTATAC	1 cut(s)	1020
Bst2UI	CCWGG	1 cut(s)	905
Bst4CI	ACNGT	5 cut(s)	80, 115, 140, 164, 1124
BstC8I	GCNNGC	2 cut(s)	679, 945
BstDEI	CTNAG	9 cut(s)	27, 101, 404, 453, 613, 852, 969, 1030, 1164
BstF5I	GGATG	4 cut(s)	175, 243, 352, 577
BstKTI	GATC	4 cut(s)	85, 147, 364, 400
BstMAI	GTCTC	2 cut(s)	475, 569
BstMBI	GATC	4 cut(s)	82, 144, 361, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	953, 1008, 1151, 1160
BstNI	CCWGG	1 cut(s)	905
BstSCI	CCNGG	1 cut(s)	903
BstSFI	CTRYAG	3 cut(s)	335, 442, 951
BstV1I	GCAGC	6 cut(s)	374, 835, 934, 937, 965, 1132
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BstZ17I	GTATAC	1 cut(s)	1020
BsuRI	GGCC	1 cut(s)	488
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	4 cut(s)	175, 243, 352, 577
BtsI	GCAGTG	2 cut(s)	963, 1001
BtsIMutI	CAGTG	5 cut(s)	169, 412, 963, 977, 1001
Cac8I	GCNNGC	2 cut(s)	679, 945
CciI	TCATGA	1 cut(s)	828
Cfr13I	GGNCC	3 cut(s)	4, 487, 547
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	4 cut(s)	255, 418, 1120, 1125
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	4 cut(s)	484, 667, 766, 829
CviQI	GTAC	4 cut(s)	255, 418, 1120, 1125
DdeI	CTNAG	9 cut(s)	27, 101, 404, 453, 613, 852, 969, 1030, 1164
DpnI	GATC	4 cut(s)	84, 146, 363, 399
DpnII	GATC	4 cut(s)	82, 144, 361, 397
Ecl136II	GAGCTC	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	107
Eco32I	GATATC	2 cut(s)	376, 729
Eco47I	GGWCC	2 cut(s)	4, 547
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	629
EcoICRI	GAGCTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	903
EcoRV	GATATC	2 cut(s)	376, 729
EcoT22I	ATGCAT	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	4 cut(s)	487, 670, 769, 832
FalI	AAGNNNNNCTT	6 cut(s)	270, 302, 744, 776, 1026, 1058
FaqI	GGGAC	2 cut(s)	89, 686
FatI	CATG	4 cut(s)	483, 666, 765, 828
FauNDI	CATATG	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	1019
Fnu4HI	GCNGC	6 cut(s)	388, 849, 948, 951, 954, 1146
FokI	GGATG	4 cut(s)	182, 250, 359, 584
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	6 cut(s)	388, 849, 948, 951, 954, 1146
FspBI	CTAG	7 cut(s)	63, 123, 221, 252, 674, 747, 944
GluI	GCNGC	6 cut(s)	388, 849, 948, 951, 954, 1146
GsaI	CCCAGC	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	488
HgaI	GACGC	1 cut(s)	608
Hin1II	CATG	4 cut(s)	487, 670, 769, 832
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	2 cut(s)	641, 866
HinfI	GANTC	7 cut(s)	23, 176, 353, 457, 609, 837, 1177
HphI	GGTGA	2 cut(s)	335, 580
Hpy166II	GTNNAC	4 cut(s)	136, 550, 784, 1020
Hpy188I	TCNGA	8 cut(s)	28, 181, 358, 726, 733, 859, 1033, 1080
Hpy188III	TCNNGA	5 cut(s)	86, 634, 829, 1046, 1174
Hpy8I	GTNNAC	4 cut(s)	136, 550, 784, 1020
HpyAV	CCTTC	4 cut(s)	26, 388, 892, 1075
HpyCH4III	ACNGT	5 cut(s)	80, 115, 140, 164, 1124
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	6 cut(s)	329, 337, 437, 681, 953, 1111
HpyF10VI	GCNNNNNNNGC	4 cut(s)	953, 1008, 1151, 1160
HpyF3I	CTNAG	9 cut(s)	27, 101, 404, 453, 613, 852, 969, 1030, 1164
HpySE526I	ACGT	1 cut(s)	578
Hsp92II	CATG	4 cut(s)	487, 670, 769, 832
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	82, 144, 361, 397
LmnI	GCTCC	1 cut(s)	999
Lsp1109I	GCAGC	6 cut(s)	374, 835, 934, 937, 965, 1132
LweI	GCATC	3 cut(s)	2, 172, 316
MaeI	CTAG	7 cut(s)	63, 123, 221, 252, 674, 747, 944
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	6 cut(s)	40, 479, 658, 669, 789, 1066
MalI	GATC	4 cut(s)	84, 146, 363, 399
MboI	GATC	4 cut(s)	82, 144, 361, 397
MboII	GAAGA	7 cut(s)	185, 362, 371, 523, 649, 877, 1046
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	5 cut(s)	90, 794, 957, 1024, 1133
MlyI	GAGTC	1 cut(s)	32
Mph1103I	ATGCAT	1 cut(s)	331
MseI	TTAA	2 cut(s)	93, 989
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	3 cut(s)	387, 649, 1163
MspR9I	CCNGG	1 cut(s)	905
Mva1269I	GAATGC	1 cut(s)	1055
MvaI	CCWGG	1 cut(s)	905
MwoI	GCNNNNNNNGC	4 cut(s)	953, 1008, 1151, 1160
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	4 cut(s)	82, 144, 361, 397
NheI	GCTAGC	1 cut(s)	943
NlaIII	CATG	4 cut(s)	487, 670, 769, 832
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	2 cut(s)	40, 658
NsiI	ATGCAT	1 cut(s)	331
PagI	TCATGA	1 cut(s)	828
PctI	GAATGC	1 cut(s)	1055
PfeI	GAWTC	6 cut(s)	176, 353, 457, 609, 837, 1177
PflMI	CCANNNNNTGG	1 cut(s)	1014
PkrI	GCNGC	6 cut(s)	389, 850, 949, 952, 955, 1147
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	903
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	903
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	3 cut(s)	4, 487, 547
PstI	CTGCAG	2 cut(s)	339, 955
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	3 cut(s)	387, 649, 1163
RsaI	GTAC	4 cut(s)	256, 419, 1121, 1126
RsaNI	GTAC	4 cut(s)	255, 418, 1120, 1125
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	93, 989
SatI	GCNGC	6 cut(s)	388, 849, 948, 951, 954, 1146
Sau3AI	GATC	4 cut(s)	82, 144, 361, 397
Sau96I	GGNCC	3 cut(s)	4, 487, 547
ScaI	AGTACT	2 cut(s)	256, 1126
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	905
SduI	GDGCHC	1 cut(s)	107
SfaNI	GCATC	3 cut(s)	2, 172, 316
SfcI	CTRYAG	3 cut(s)	335, 442, 951
SinI	GGWCC	2 cut(s)	4, 547
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	3 cut(s)	842, 869, 1054
SmoI	CTYRAG	3 cut(s)	842, 869, 1054
Sse9I	AATT	5 cut(s)	90, 794, 957, 1024, 1133
SspMI	CTAG	7 cut(s)	63, 123, 221, 252, 674, 747, 944
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	903
TaaI	ACNGT	5 cut(s)	80, 115, 140, 164, 1124
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	1 cut(s)	378
TasI	AATT	5 cut(s)	90, 794, 957, 1024, 1133
TatI	WGTACW	4 cut(s)	254, 417, 1119, 1124
TfiI	GAWTC	6 cut(s)	176, 353, 457, 609, 837, 1177
Tru1I	TTAA	2 cut(s)	93, 989
Tru9I	TTAA	2 cut(s)	93, 989
TscAI	CASTG	5 cut(s)	169, 412, 970, 977, 1001
TseFI	GTSAC	2 cut(s)	40, 658
TseI	GCWGC	6 cut(s)	387, 848, 947, 950, 953, 1145
Tsp45I	GTSAC	2 cut(s)	40, 658
TspDTI	ATGAA	6 cut(s)	186, 285, 363, 817, 930, 1053
TspRI	CASTG	5 cut(s)	169, 412, 970, 977, 1001
Van91I	CCANNNNNTGG	1 cut(s)	1014
VpaK11BI	GGWCC	2 cut(s)	4, 547
XapI	RAATTY	1 cut(s)	1133
XmiI	GTMKAC	1 cut(s)	1019
XspI	CTAG	7 cut(s)	63, 123, 221, 252, 674, 747, 944
ZrmI	AGTACT	2 cut(s)	256, 1126
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.