Rroxscaffold_7G00187790

Cyclin_C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009019
Physical Location & Seq
Forward (+)
27238196 .. 27241578
3383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187790.1

Sequence Viewer

Length: 1257 bp
ATGGGTTCCAAGGAGAACAATCAAGGTCTCGTTAGGCCTGCCAATGTTCAAGGTAGAGACACTTCAGAAGCTTTAAACGGTGTTGAGGGTTTAATTTCGAATGATGTGGCTGGTGATAAGAAATTGTCAAATCTGGGACATAGACCCATTACAAGGAGGTTTGCTGCACAAATGGTCCAGCAATGCCCAAAGGAATCTGAGGAAGTCATTGTGACTACATTGGTTCCAAATCCTAGTGGTGTTAGGGACTGTGATCAGGAAATTAAGAAACTGAGCTCTTCTACTGTCAATCCTAGTGGTCTTGTGGACTGTGATATCATAGATGTGGAGGACAGTGAGGATGAAGATTCTGATGCTGTGCCAATGTATGTGAAGCACACAGAAGCTATGCTAGATGAGATTGATAGGATGGAGGAGGATGAAGAATCGGAAGATCCCATTATGGATATCGACACCAGCTGCATGAAGGATCAACTCAGTGTTGTGGAGTACATAGATGACATCTATGCACACTACAGGAAAACTGAGAATCAAAGCTGTGTCTCCCCACGTTACATGGCCCAGCAACCTGACATCAATGAGAAGATGAGGGCTATTCTTATTGACTGGCTTATTGAGGTCCACTACAAGTTTGAGCTTATGGATGAGACGTTATTCCTCACCATCAACCTTATAGACAGATTCTTAGAGCGTCAAGTGGTGGTCAGGAAGAAGCTTCAGCTGGTTGGTGTGACAGCCATGTTACTAGCCTGCAAGTATGAGGAGGTTTCAGTCCCAATCGTGGAGGATTTTGTTCTGATATCAGACAAGGCATATACTAGGAAAGATGTCCTTGACATGGAGAAATCAATGGTCAACAAGTTACAATTCAACTTTTCTGTTCCTACAGCATATGTGTTCATGAGGAGATTCCTCAAGGCTGCTCAGTCTGACAAAAAGCTTGAGCTTCTGTCCTTCTTCCTCATTGAGCTATGCCTAGTGGAGTATGAAATGCTAAAGTTTCCACCATCTCTGCTAGCTGCTGCAGCAATTTACACTGCTCAGTGTAGTCTTTCAAGGTTCAAGCAGTGGAGCAAAACCAGCGAGTGGTATACCAATTACTCAGAAGATGAACTTCAAGAATGCTCAAGGTTGATGGTTATTTTCCATCAGAAGGCCGAAACTGGTAGGCTAACAGGAGTGCATAGGAAGTACAGTACTTGGAAATTTGGCTATGCTGCTAAAGCTGAACCAGCTGAGTTTCTCCTGAATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

418

Amino Acids

47.9

Weight (kDa)

4.81

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 167 - 292 1e-49 Cyclin, N-terminal domain
Cyclin_C PF02984 295 - 411 8.3e-37 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1086
AccI GTMKAC 1 cut(s) 1091
AclWI GGATC 2 cut(s) 428, 477
AcsI RAATTY 1 cut(s) 1205
AcuI CTGAAG 2 cut(s) 48, 701
AfaI GTAC 3 cut(s) 491, 1193, 1198
AfiI CCNNNNNNNGG 5 cut(s) 153, 781, 838, 1086, 1153
AgsI TTSAA 5 cut(s) 50, 871, 1056, 1063, 1118
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 4 cut(s) 32, 51, 547, 641
AlwI GGATC 2 cut(s) 428, 477
AoxI GGCC 3 cut(s) 35, 558, 1155
ApeKI GCWGC 7 cut(s) 164, 459, 920, 1019, 1022, 1025, 1217
ApoI RAATTY 1 cut(s) 1205
AspS9I GGNCC 3 cut(s) 175, 559, 619
AsuHPI GGTGA 2 cut(s) 125, 652
AsuII TTCGAA 1 cut(s) 98
AsuNHI GCTAGC 1 cut(s) 1015
AvaII GGWCC 2 cut(s) 175, 619
BanII GRGCYC 1 cut(s) 278
BarI GAAGNNNNNNTAC 2 cut(s) 46, 78
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 7 cut(s) 151, 446, 907, 1006, 1009, 1037, 1204
BccI CCATC 5 cut(s) 403, 671, 1015, 1129, 1155
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 4 cut(s) 32, 51, 547, 641
BfaI CTAG 7 cut(s) 234, 294, 392, 746, 819, 977, 1016
BfmI CTRYAG 3 cut(s) 514, 885, 1023
BisI GCNGC 7 cut(s) 165, 460, 921, 1020, 1023, 1026, 1218
BlsI GCNGC 7 cut(s) 166, 461, 922, 1021, 1024, 1027, 1219
BmcAI AGTACT 1 cut(s) 1198
Bme18I GGWCC 2 cut(s) 175, 619
BmgT120I GGNCC 3 cut(s) 175, 559, 619
BmiI GGNNCC 2 cut(s) 7, 225
BmsI GCATC 1 cut(s) 343
BmtI GCTAGC 1 cut(s) 1019
Bpu14I TTCGAA 1 cut(s) 98
BpuEI CTTGAG 3 cut(s) 899, 962, 1111
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 5 cut(s) 153, 781, 838, 1086, 1153
Bse1I ACTGG 2 cut(s) 611, 1168
Bse3DI GCAATG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 4 cut(s) 346, 414, 424, 649
BseLI CCNNNNNNNGG 5 cut(s) 153, 781, 838, 1086, 1153
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 8 cut(s) 189, 263, 490, 516, 938, 1055, 1116, 1227
BseNI ACTGG 2 cut(s) 611, 1168
BseRI GAGGAG 3 cut(s) 428, 776, 919
BseXI GCAGC 7 cut(s) 151, 446, 907, 1006, 1009, 1037, 1204
BseYI CCCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 3 cut(s) 37, 560, 1157
BsiHKAI GWGCWC 1 cut(s) 278
BslFI GGGAC 3 cut(s) 150, 260, 758
BslI CCNNNNNNNGG 5 cut(s) 153, 781, 838, 1086, 1153
BsmAI GTCTC 4 cut(s) 32, 51, 547, 641
BsmBI CGTCTC 1 cut(s) 641
BsmFI GGGAC 3 cut(s) 150, 260, 758
BsmI GAATGC 1 cut(s) 1127
BsnI GGCC 3 cut(s) 37, 560, 1157
Bso31I GGTCTC 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 3 cut(s) 253, 433, 469
BspANI GGCC 3 cut(s) 37, 560, 1157
BspCNI CTCAG 8 cut(s) 190, 264, 489, 517, 937, 1054, 1115, 1228
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 2 cut(s) 7, 225
BspMAI CTGCAG 1 cut(s) 1027
BspOI GCTAGC 1 cut(s) 1019
BspPI GGATC 2 cut(s) 428, 477
BspQI GCTCTTC 1 cut(s) 283
BspT104I TTCGAA 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 2 cut(s) 611, 1168
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 3 cut(s) 253, 433, 469
BssNAI GTATAC 1 cut(s) 1092
BssT1I CCWWGG 1 cut(s) 9
Bst1107I GTATAC 1 cut(s) 1092
Bst4CI ACNGT 6 cut(s) 80, 251, 286, 311, 335, 1196
Bst6I CTCTTC 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 98
BstC8I GCNNGC 3 cut(s) 39, 751, 1017
BstDEI CTNAG 9 cut(s) 198, 272, 476, 525, 685, 924, 1041, 1102, 1236
BstF5I GGATG 4 cut(s) 346, 414, 424, 649
BstKTI GATC 3 cut(s) 256, 436, 472
BstMAI GTCTC 4 cut(s) 32, 51, 547, 641
BstMBI GATC 3 cut(s) 253, 433, 469
BstMWI GCNNNNNNNGC 4 cut(s) 1025, 1080, 1223, 1232
BstSFI CTRYAG 3 cut(s) 514, 885, 1023
BstV1I GCAGC 7 cut(s) 151, 446, 907, 1006, 1009, 1037, 1204
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BstZ17I GTATAC 1 cut(s) 1092
BsuRI GGCC 3 cut(s) 37, 560, 1157
BtsCI GGATG 4 cut(s) 346, 414, 424, 649
BtsI GCAGTG 2 cut(s) 1035, 1073
BtsIMutI CAGTG 5 cut(s) 340, 484, 1035, 1049, 1073
Cac8I GCNNGC 3 cut(s) 39, 751, 1017
CciI TCATGA 1 cut(s) 900
Cfr13I GGNCC 3 cut(s) 175, 559, 619
CseI GACGC 1 cut(s) 680
Csp6I GTAC 3 cut(s) 490, 1192, 1197
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 5 cut(s) 463, 556, 739, 838, 901
CviQI GTAC 3 cut(s) 490, 1192, 1197
DdeI CTNAG 9 cut(s) 198, 272, 476, 525, 685, 924, 1041, 1102, 1236
DpnI GATC 3 cut(s) 255, 435, 471
DpnII GATC 3 cut(s) 253, 433, 469
DraI TTTAAA 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Ecl136II GAGCTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 278
Eco31I GGTCTC 1 cut(s) 32
Eco32I GATATC 3 cut(s) 316, 448, 801
Eco47I GGWCC 2 cut(s) 175, 619
Eco53kI GAGCTC 1 cut(s) 276
Eco57I CTGAAG 2 cut(s) 48, 701
EcoICRI GAGCTC 1 cut(s) 276
EcoRV GATATC 3 cut(s) 316, 448, 801
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 641
FaeI CATG 5 cut(s) 466, 559, 742, 841, 904
FalI AAGNNNNNCTT 4 cut(s) 816, 848, 1098, 1130
FaqI GGGAC 3 cut(s) 150, 260, 758
FatI CATG 5 cut(s) 462, 555, 738, 837, 900
FauNDI CATATG 1 cut(s) 892
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 1 cut(s) 1091
Fnu4HI GCNGC 7 cut(s) 165, 460, 921, 1020, 1023, 1026, 1218
FokI GGATG 4 cut(s) 353, 421, 431, 656
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 7 cut(s) 165, 460, 921, 1020, 1023, 1026, 1218
FspBI CTAG 7 cut(s) 234, 294, 392, 746, 819, 977, 1016
GluI GCNGC 7 cut(s) 165, 460, 921, 1020, 1023, 1026, 1218
GsaI CCCAGC 1 cut(s) 565
HaeIII GGCC 3 cut(s) 37, 560, 1157
HgaI GACGC 1 cut(s) 680
Hin1II CATG 5 cut(s) 466, 559, 742, 841, 904
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HindIII AAGCTT 3 cut(s) 69, 713, 938
HinfI GANTC 7 cut(s) 194, 347, 425, 529, 681, 909, 1249
HphI GGTGA 2 cut(s) 125, 652
Hpy166II GTNNAC 4 cut(s) 307, 622, 856, 1092
Hpy188I TCNGA 9 cut(s) 67, 199, 352, 430, 798, 805, 931, 1105, 1152
Hpy188III TCNNGA 5 cut(s) 257, 706, 901, 1118, 1246
Hpy8I GTNNAC 4 cut(s) 307, 622, 856, 1092
HpyAV CCTTC 3 cut(s) 460, 964, 1147
HpyCH4III ACNGT 6 cut(s) 80, 251, 286, 311, 335, 1196
HpyCH4IV ACGT 2 cut(s) 550, 650
HpyCH4V TGCA 6 cut(s) 167, 462, 509, 753, 1025, 1183
HpyF10VI GCNNNNNNNGC 4 cut(s) 1025, 1080, 1223, 1232
HpyF3I CTNAG 9 cut(s) 198, 272, 476, 525, 685, 924, 1041, 1102, 1236
HpySE526I ACGT 2 cut(s) 550, 650
Hsp92II CATG 5 cut(s) 466, 559, 742, 841, 904
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 253, 433, 469
LguI GCTCTTC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 1071
Lsp1109I GCAGC 7 cut(s) 151, 446, 907, 1006, 1009, 1037, 1204
LweI GCATC 1 cut(s) 343
MaeI CTAG 7 cut(s) 234, 294, 392, 746, 819, 977, 1016
MaeII ACGT 2 cut(s) 550, 650
MaeIII GTNAC 5 cut(s) 211, 551, 730, 741, 861
MalI GATC 3 cut(s) 255, 435, 471
MboI GATC 3 cut(s) 253, 433, 469
MboII GAAGA 8 cut(s) 270, 356, 434, 443, 595, 721, 949, 1118
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 7 cut(s) 93, 122, 261, 866, 1029, 1096, 1205
MseI TTAA 3 cut(s) 74, 92, 264
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 3 cut(s) 459, 721, 1235
Mva1269I GAATGC 1 cut(s) 1127
MwoI GCNNNNNNNGC 4 cut(s) 1025, 1080, 1223, 1232
NdeI CATATG 1 cut(s) 892
NdeII GATC 3 cut(s) 253, 433, 469
NheI GCTAGC 1 cut(s) 1015
NlaIII CATG 5 cut(s) 466, 559, 742, 841, 904
NlaIV GGNNCC 2 cut(s) 7, 225
NmuCI GTSAC 2 cut(s) 211, 730
NspV TTCGAA 1 cut(s) 98
PagI TCATGA 1 cut(s) 900
PceI AGGCCT 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 283
PctI GAATGC 1 cut(s) 1127
PfeI GAWTC 7 cut(s) 194, 347, 425, 529, 681, 909, 1249
PflMI CCANNNNNTGG 1 cut(s) 1086
PkrI GCNGC 7 cut(s) 166, 461, 922, 1021, 1024, 1027, 1219
Psp124BI GAGCTC 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 561
PspN4I GGNNCC 2 cut(s) 7, 225
PspPI GGNCC 3 cut(s) 175, 559, 619
PstI CTGCAG 1 cut(s) 1027
PsuI RGATCY 1 cut(s) 433
PvuII CAGCTG 3 cut(s) 459, 721, 1235
RsaI GTAC 3 cut(s) 491, 1193, 1198
RsaNI GTAC 3 cut(s) 490, 1192, 1197
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 283
SaqAI TTAA 3 cut(s) 74, 92, 264
SatI GCNGC 7 cut(s) 165, 460, 921, 1020, 1023, 1026, 1218
Sau3AI GATC 3 cut(s) 253, 433, 469
Sau96I GGNCC 3 cut(s) 175, 559, 619
ScaI AGTACT 1 cut(s) 1198
SduI GDGCHC 1 cut(s) 278
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 3 cut(s) 514, 885, 1023
SfuI TTCGAA 1 cut(s) 98
SinI GGWCC 2 cut(s) 175, 619
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 3 cut(s) 914, 941, 1126
SmoI CTYRAG 3 cut(s) 914, 941, 1126
Sse9I AATT 7 cut(s) 93, 122, 261, 866, 1029, 1096, 1205
SseBI AGGCCT 1 cut(s) 37
SspMI CTAG 7 cut(s) 234, 294, 392, 746, 819, 977, 1016
SstI GAGCTC 1 cut(s) 278
StuI AGGCCT 1 cut(s) 37
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 6 cut(s) 80, 251, 286, 311, 335, 1196
TaiI ACGT 2 cut(s) 553, 653
TaqI TCGA 2 cut(s) 98, 450
TasI AATT 7 cut(s) 93, 122, 261, 866, 1029, 1096, 1205
TatI WGTACW 3 cut(s) 489, 1191, 1196
TfiI GAWTC 7 cut(s) 194, 347, 425, 529, 681, 909, 1249
Tru1I TTAA 3 cut(s) 74, 92, 264
Tru9I TTAA 3 cut(s) 74, 92, 264
TscAI CASTG 5 cut(s) 340, 484, 1042, 1049, 1073
TseFI GTSAC 2 cut(s) 211, 730
TseI GCWGC 7 cut(s) 164, 459, 920, 1019, 1022, 1025, 1217
Tsp45I GTSAC 2 cut(s) 211, 730
TspDTI ATGAA 6 cut(s) 357, 435, 479, 889, 1002, 1125
TspRI CASTG 5 cut(s) 340, 484, 1042, 1049, 1073
Van91I CCANNNNNTGG 1 cut(s) 1086
VpaK11BI GGWCC 2 cut(s) 175, 619
XapI RAATTY 1 cut(s) 1205
XmiI GTMKAC 1 cut(s) 1091
XspI CTAG 7 cut(s) 234, 294, 392, 746, 819, 977, 1016
ZrmI AGTACT 1 cut(s) 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.