Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009019

Physical Location & Seq

Genomic Coordinates Reverse (-)

16639222 .. 16641333

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTTTGTTAAGCACACCGAAGCTATGCTAGATGAAATTGATAGGATGGAAGAGGATGAAAATCTGGAGGATGAGGACCCGATTATGGATATTGACAGCAGATGCTCAAAGGATCCGCTTAATGTTGTTGAGTACATAGATGACATCTATGCTCACTACAGGAAATCTGAGAAGTCAAGCTCTGTCTCCCCAAGTTACATGGCTCACCAACCTGACATCAATGAGAAAATGAGGGCAATTCTCATTGACTGGCTTATTGAGGTCCACTACAAGTTTGAGCTTATGGACGAGACACTATTTCTTACTGTAAATCTTATAGACAGGTTCTTAGAGAGCCAAATGGTGATCAGAAAGAAGCTTCAGTTGGTTGGTGTGACAGCCATGCTATTAGCTTGCAAGTATGAGGAGGTTTCTGTCCCAATTGTGGAGGATTTTGTTCTGATATCAGATAAGGCATATTCAAGGAAAGATGTGCTTGATATGGAGAAATCAATGGTTAACAGCTTACAATTCAACTTCTCTGTTCCTACCGTGTATGTGTTCATGAGGCGATTCCTCAAGGCAGCTCAATCAGAGAAAAAGCTTGAGCTTCTGTCCTTCTTCCTCATTGAGCTATGCCTGGTGGAGTACGAAATGCTCAGGTTCCCCCCTTCTATGCTAGCAGCTGCCGCAATTTATACTGCTCAGTGTACTCTGTCCCGGTTCAAGCAGTGGAGCAAGACTAGCGAGTGGTATACGAATTACTCGGAAGATGAACTCCTAGAATGCTCGAGGATGATGGTTACGTTTCATCAGAAGGCTGAAACTGCGAAACTCACTGGAGTGCACCGGAAGTACAGCACATGGAAGTTTGGCTATGCAGCTAAAGCTCAACCAGCTGAGTTCCTCTTGGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

300

Amino Acids

35.1

Weight (kDa)

5.05

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	48 - 173	1.6e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	176 - 292	1.1e-37	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20610 AT1G76310 AT1G76310 AT1G76310 AT1G76310
fragaria_vesca	FvH4_2g16590
malus_domestica	MD05G1134100.v1.1 MD10G1139200.v1.1
prunus_persica	Prupe.8G177900_v2.0.a1
pyrus_communis	pycom05g13080 pycom10g11830
rosa_chinensis	RchiOBHm_Chr6g0280651
rosa_laevigata	RLG00000013039
rosa_multiflora	Rmu_co8479241.1_g000001 Rmu_sc0000976.1_g000005
rosa_roxburghii	Rroxscaffold_7G00187790
rosa_rugosa	Rorug06G0133400 Rorug06G0133400
rosa_samantha	Rh6AG246000 Rh6BG248300 Rh6CG249600
rosa_wichuraiana	Rw6G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	734
AciI	CCGC	2 cut(s)	116, 669
AclWI	GGATC	2 cut(s)	107, 120
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	4 cut(s)	134, 629, 691, 836
AfiI	CCNNNNNNNGG	2 cut(s)	85, 424
AgsI	TTSAA	3 cut(s)	462, 514, 706
AjnI	CCWGG	1 cut(s)	618
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AleI	CACNNNNGTG	1 cut(s)	821
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	2 cut(s)	190, 284
Alw44I	GTGCAC	1 cut(s)	824
AlwI	GGATC	2 cut(s)	107, 120
Ama87I	CYCGRG	1 cut(s)	769
ApaLI	GTGCAC	1 cut(s)	824
ApeKI	GCWGC	4 cut(s)	563, 662, 665, 860
AspS9I	GGNCC	2 cut(s)	76, 262
AsuC2I	CCSGG	1 cut(s)	700
AsuHPI	GGTGA	2 cut(s)	197, 355
AsuNHI	GCTAGC	1 cut(s)	658
AvaI	CYCGRG	1 cut(s)	769
AvaII	GGWCC	2 cut(s)	76, 262
BaeGI	GKGCMC	1 cut(s)	828
BamHI	GGATCC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	4 cut(s)	575, 652, 674, 872
BccI	CCATC	2 cut(s)	40, 772
BciT130I	CCWGG	1 cut(s)	620
BclI	TGATCA	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	700
BcoDI	GTCTC	2 cut(s)	190, 284
BfaI	CTAG	4 cut(s)	29, 659, 723, 761
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	5 cut(s)	564, 663, 666, 669, 861
BlsI	GCNGC	5 cut(s)	565, 664, 667, 670, 862
Bme1390I	CCNGG	2 cut(s)	620, 700
Bme18I	GGWCC	2 cut(s)	76, 262
BmeT110I	CYCGRG	1 cut(s)	769
BmgT120I	GGNCC	2 cut(s)	76, 262
BmiI	GGNNCC	3 cut(s)	78, 114, 644
BmrFI	CCNGG	2 cut(s)	620, 700
BmsI	GCATC	1 cut(s)	92
BmtI	GCTAGC	1 cut(s)	662
BpmI	CTGGAG	2 cut(s)	86, 840
Bpu10I	CCTNAGC	1 cut(s)	638
BpuEI	CTTGAG	2 cut(s)	542, 605
BpuMI	CCSGG	1 cut(s)	700
BsaBI	GATNNNNATC	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	828
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 424
Bse1I	ACTGG	2 cut(s)	254, 823
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	620
BseGI	GGATG	4 cut(s)	51, 61, 76, 780
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	85, 424
BseMII	CTCAG	4 cut(s)	159, 652, 698, 870
BseNI	ACTGG	2 cut(s)	254, 823
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	828
BseXI	GCAGC	4 cut(s)	575, 652, 674, 872
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	1 cut(s)	769
BsiSI	CCGG	2 cut(s)	700, 829
BslFI	GGGAC	2 cut(s)	401, 682
BslI	CCNNNNNNNGG	2 cut(s)	85, 424
BsmAI	GTCTC	2 cut(s)	190, 284
BsmFI	GGGAC	2 cut(s)	401, 682
BsmI	GAATGC	1 cut(s)	770
BsoBI	CYCGRG	1 cut(s)	769
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp143I	GATC	3 cut(s)	112, 345, 892
BspACI	CCGC	2 cut(s)	116, 669
BspCNI	CTCAG	4 cut(s)	160, 651, 697, 871
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	78, 114, 644
BspOI	GCTAGC	1 cut(s)	662
BspPI	GGATC	2 cut(s)	107, 120
BsrI	ACTGG	2 cut(s)	254, 823
BssMI	GATC	3 cut(s)	112, 345, 892
BssNAI	GTATAC	1 cut(s)	735
Bst1107I	GTATAC	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	2 cut(s)	307, 532
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	394, 660
BstDEI	CTNAG	5 cut(s)	168, 328, 638, 684, 879
BstF5I	GGATG	4 cut(s)	51, 61, 76, 780
BstKTI	GATC	3 cut(s)	115, 348, 895
BstMAI	GTCTC	2 cut(s)	190, 284
BstMBI	GATC	3 cut(s)	112, 345, 892
BstMWI	GCNNNNNNNGC	5 cut(s)	668, 723, 806, 866, 875
BstNI	CCWGG	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	618, 698
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	828
BstV1I	GCAGC	4 cut(s)	575, 652, 674, 872
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BstZ17I	GTATAC	1 cut(s)	735
BtsCI	GGATG	4 cut(s)	51, 61, 76, 780
BtsI	GCAGTG	1 cut(s)	716
BtsIMutI	CAGTG	4 cut(s)	692, 716, 816, 895
Cac8I	GCNNGC	2 cut(s)	394, 660
CciI	TCATGA	1 cut(s)	543
Cfr13I	GGNCC	2 cut(s)	76, 262
Csp6I	GTAC	4 cut(s)	133, 628, 690, 835
CviAII	CATG	4 cut(s)	199, 382, 544, 843
CviQI	GTAC	4 cut(s)	133, 628, 690, 835
DdeI	CTNAG	5 cut(s)	168, 328, 638, 684, 879
DpnI	GATC	3 cut(s)	114, 347, 894
DpnII	GATC	3 cut(s)	112, 345, 892
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	76, 262
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	769
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	618
EcoRV	GATATC	1 cut(s)	444
FaeI	CATG	4 cut(s)	202, 385, 547, 846
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	2 cut(s)	401, 682
FatI	CATG	4 cut(s)	198, 381, 543, 842
FbaI	TGATCA	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	734
Fnu4HI	GCNGC	5 cut(s)	564, 663, 666, 669, 861
FokI	GGATG	4 cut(s)	58, 68, 83, 787
Fsp4HI	GCNGC	5 cut(s)	564, 663, 666, 669, 861
FspBI	CTAG	4 cut(s)	29, 659, 723, 761
GluI	GCNGC	5 cut(s)	564, 663, 666, 669, 861
GsuI	CTGGAG	2 cut(s)	86, 840
HapII	CCGG	2 cut(s)	700, 829
Hin1II	CATG	4 cut(s)	202, 385, 547, 846
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	2 cut(s)	356, 581
HinfI	GANTC	1 cut(s)	552
HpaI	GTTAAC	1 cut(s)	499
HpaII	CCGG	2 cut(s)	700, 829
HphI	GGTGA	2 cut(s)	197, 355
Hpy166II	GTNNAC	5 cut(s)	265, 499, 690, 735, 826
Hpy188I	TCNGA	7 cut(s)	169, 350, 441, 448, 574, 748, 795
Hpy188III	TCNNGA	2 cut(s)	65, 544
Hpy8I	GTNNAC	5 cut(s)	265, 499, 690, 735, 826
HpyAV	CCTTC	3 cut(s)	607, 660, 790
HpyCH4III	ACNGT	2 cut(s)	307, 532
HpyCH4IV	ACGT	1 cut(s)	785
HpyCH4V	TGCA	3 cut(s)	396, 826, 860
HpyF10VI	GCNNNNNNNGC	5 cut(s)	668, 723, 806, 866, 875
HpyF3I	CTNAG	5 cut(s)	168, 328, 638, 684, 879
HpySE526I	ACGT	1 cut(s)	785
Hsp92II	CATG	4 cut(s)	202, 385, 547, 846
Ksp22I	TGATCA	1 cut(s)	345
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	112, 345, 892
LmnI	GCTCC	1 cut(s)	714
Lsp1109I	GCAGC	4 cut(s)	575, 652, 674, 872
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	4 cut(s)	29, 659, 723, 761
MaeII	ACGT	1 cut(s)	785
MaeIII	GTNAC	3 cut(s)	194, 373, 781
MalI	GATC	3 cut(s)	114, 347, 894
MboI	GATC	3 cut(s)	112, 345, 892
MboII	GAAGA	3 cut(s)	62, 592, 761
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	828
MluCI	AATT	6 cut(s)	36, 237, 420, 509, 672, 739
MseI	TTAA	3 cut(s)	9, 120, 498
MslI	CAYNNNNRTG	1 cut(s)	821
MspA1I	CMGCKG	2 cut(s)	665, 878
MspI	CCGG	2 cut(s)	700, 829
MspR9I	CCNGG	2 cut(s)	620, 700
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	5 cut(s)	668, 723, 806, 866, 875
NciI	CCSGG	1 cut(s)	700
NdeII	GATC	3 cut(s)	112, 345, 892
NheI	GCTAGC	1 cut(s)	658
NlaIII	CATG	4 cut(s)	202, 385, 547, 846
NlaIV	GGNNCC	3 cut(s)	78, 114, 644
NmuCI	GTSAC	1 cut(s)	373
OliI	CACNNNNGTG	1 cut(s)	821
PaeR7I	CTCGAG	1 cut(s)	769
PagI	TCATGA	1 cut(s)	543
PctI	GAATGC	1 cut(s)	770
PfeI	GAWTC	1 cut(s)	552
PkrI	GCNGC	5 cut(s)	565, 664, 667, 670, 862
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	618
PspGI	CCWGG	1 cut(s)	618
PspN4I	GGNNCC	3 cut(s)	78, 114, 644
PspPI	GGNCC	2 cut(s)	76, 262
PspPPI	RGGWCCY	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	112
PvuII	CAGCTG	2 cut(s)	665, 878
RsaI	GTAC	4 cut(s)	134, 629, 691, 836
RsaNI	GTAC	4 cut(s)	133, 628, 690, 835
RseI	CAYNNNNRTG	1 cut(s)	821
SaqAI	TTAA	3 cut(s)	9, 120, 498
SatI	GCNGC	5 cut(s)	564, 663, 666, 669, 861
Sau3AI	GATC	3 cut(s)	112, 345, 892
Sau96I	GGNCC	2 cut(s)	76, 262
ScrFI	CCNGG	2 cut(s)	620, 700
SduI	GDGCHC	1 cut(s)	828
SfaNI	GCATC	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	157
Sfr274I	CTCGAG	1 cut(s)	769
SinI	GGWCC	2 cut(s)	76, 262
SlaI	CTCGAG	1 cut(s)	769
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	3 cut(s)	557, 584, 769
SmoI	CTYRAG	3 cut(s)	557, 584, 769
Sse9I	AATT	6 cut(s)	36, 237, 420, 509, 672, 739
SsiI	CCGC	2 cut(s)	116, 669
SspMI	CTAG	4 cut(s)	29, 659, 723, 761
StyD4I	CCNGG	2 cut(s)	618, 698
TaaI	ACNGT	2 cut(s)	307, 532
TaiI	ACGT	1 cut(s)	788
TaqI	TCGA	1 cut(s)	770
TasI	AATT	6 cut(s)	36, 237, 420, 509, 672, 739
TatI	WGTACW	3 cut(s)	132, 689, 834
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	1 cut(s)	552
Tru1I	TTAA	3 cut(s)	9, 120, 498
Tru9I	TTAA	3 cut(s)	9, 120, 498
TscAI	CASTG	3 cut(s)	692, 716, 823
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	4 cut(s)	563, 662, 665, 860
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	5 cut(s)	48, 72, 532, 768, 779
TspRI	CASTG	3 cut(s)	692, 716, 823
VneI	GTGCAC	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	76, 262
XhoI	CTCGAG	1 cut(s)	769
XmiI	GTMKAC	1 cut(s)	734
XspI	CTAG	4 cut(s)	29, 659, 723, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.