Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000976.1

Orthogroup ID

OG0009019

Physical Location & Seq

Genomic Coordinates Reverse (-)

19560 .. 23725

Gene Structure 4166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000976.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atgcaaaagccaaaaatcattggcgaagagcgtgaacacgggcctgtttccacagatggaaagacccgacctttcgtcaaggtgatcgaaatgggttccaaggagaacaatcaaggtctcgttaggcctgcaaatgtccaaggtccaggattgttggggggttccaagtttgtgaaggagattgggcacaatcatcgagcggcactaagcaatatcaccaatttgaaaagagaggcttctgggaatgatgcggctggtgataagaaattgtcaaatctgggacatagacccattacaaggaggtttgctgcacaaatggtccagcaatgcccaaaggaatctgaggaaggcattgtgactacattggttccaaatcctagtggcgttagggactgtgatcaggaaattaagaaattgagctcatctactgtcaatcctagtggtcttgtggactgtgagatcatagatgtggaggacagtgaggatgaagattctgatgctgtgccaatgtatgtgaagcacacagaagctatgctagatgagattgataggatggaggaggatgaagaatcggaagatcccattatggatatcgacaccagctgcgtgaaggatcaactcagtgttgtggagtacatagatgacatctatgcacactacaggaaaactgagaatcaaagctgtgtctccccccgttacatggcccagcaacctgacatcaatgagaagatgagggctattcttattgactggcttattgaggtccactacaagtttgagcttatggatgagacgttattcctcaccatcaaccttatagacagattcttagagcgtcaagtggtggtcaggaagaagcttcagctggttggtgtgacagccatgttactagcctgcaagtatgaggaggtttctgtcccaatcgtggaggattttgttctgatatcagataaggcatatactaggaaagatgtccttgacatggagaaatcaatggtcaacaagttacaattcaacttttctgttcctaccccatatgtgttcatgaggagattcctcaaggctgctcagtctgacaaaaagcttgagcttctgtccttcttcctcattgagctatgcctagtggagtatgaaatgctaaagtttccaccatctctgctagctgctgcagcaatttacactgctcagtgtagtctttcaaggttcaagcagtggagcaaaaccagcgagtggtataccaatttctcagaagatgaacttcaagaatgctcaaggttgatggttactttccatcagaaggcagaaactggtaggctaacaggagtgcataggaagtacagtacttggaaatttggctatgctgctaaagctgaaccagctgagtttctcctgaatccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

466

Amino Acids

53.11

Weight (kDa)

5.22

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20610 AT1G76310 AT1G76310 AT1G76310 AT1G76310
fragaria_vesca	FvH4_2g16590
malus_domestica	MD05G1134100.v1.1 MD10G1139200.v1.1
prunus_persica	Prupe.8G177900_v2.0.a1
pyrus_communis	pycom05g13080 pycom10g11830
rosa_chinensis	RchiOBHm_Chr6g0280651
rosa_laevigata	RLG00000013039
rosa_multiflora	Rmu_co8479241.1_g000001 Rmu_sc0000976.1_g000005
rosa_roxburghii	Rroxscaffold_7G00187790
rosa_rugosa	Rorug06G0133400 Rorug06G0133400
rosa_samantha	Rh6AG246000 Rh6BG248300 Rh6CG249600
rosa_wichuraiana	Rw6G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1230
AccBSI	CCGCTC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	1235
AciI	CCGC	2 cut(s)	200, 251
AclWI	GGATC	2 cut(s)	572, 621
AcsI	RAATTY	1 cut(s)	1349
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	3 cut(s)	635, 1337, 1342
AfiI	CCNNNNNNNGG	6 cut(s)	297, 700, 925, 982, 1230, 1297
AgsI	TTSAA	5 cut(s)	226, 1015, 1200, 1207, 1262
AhdI	GACNNNNNGTC	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	3 cut(s)	122, 691, 785
AlwI	GGATC	2 cut(s)	572, 621
AlwNI	CAGNNNCTG	1 cut(s)	1307
AoxI	GGCC	3 cut(s)	41, 125, 702
ApeKI	GCWGC	7 cut(s)	308, 603, 1064, 1163, 1166, 1169, 1361
ApoI	RAATTY	1 cut(s)	1349
AspS9I	GGNCC	5 cut(s)	41, 143, 319, 703, 763
AsuHPI	GGTGA	4 cut(s)	94, 208, 269, 796
AsuNHI	GCTAGC	1 cut(s)	1159
AvaII	GGWCC	3 cut(s)	143, 319, 763
BaeGI	GKGCMC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	7 cut(s)	295, 590, 1051, 1150, 1153, 1181, 1348
BccI	CCATC	6 cut(s)	50, 547, 815, 1159, 1273, 1299
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	3 cut(s)	122, 691, 785
BfaI	CTAG	7 cut(s)	378, 438, 536, 890, 963, 1121, 1160
BfmI	CTRYAG	2 cut(s)	658, 1167
BisI	GCNGC	9 cut(s)	201, 252, 309, 604, 1065, 1164, 1167, 1170, 1362
BlsI	GCNGC	9 cut(s)	202, 253, 310, 605, 1066, 1165, 1168, 1171, 1363
BmcAI	AGTACT	1 cut(s)	1342
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	3 cut(s)	143, 319, 763
BmeRI	GACNNNNNGTC	1 cut(s)	74
BmgT120I	GGNCC	5 cut(s)	41, 143, 319, 703, 763
BmiI	GGNNCC	3 cut(s)	97, 163, 369
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	238, 487
BmtI	GCTAGC	1 cut(s)	1163
BpuEI	CTTGAG	3 cut(s)	1043, 1106, 1255
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	99, 139
Bsc4I	CCNNNNNNNGG	6 cut(s)	297, 700, 925, 982, 1230, 1297
Bse1I	ACTGG	2 cut(s)	755, 1312
Bse3DI	GCAATG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	99, 139
BseGI	GGATG	4 cut(s)	490, 558, 568, 793
BseLI	CCNNNNNNNGG	6 cut(s)	297, 700, 925, 982, 1230, 1297
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	7 cut(s)	333, 634, 660, 1082, 1199, 1260, 1371
BseNI	ACTGG	2 cut(s)	755, 1312
BseRI	GAGGAG	3 cut(s)	572, 920, 1063
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	7 cut(s)	295, 590, 1051, 1150, 1153, 1181, 1348
BseYI	CCCAGC	1 cut(s)	705
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	43, 127, 704
BsiHKAI	GWGCWC	1 cut(s)	422
BslFI	GGGAC	3 cut(s)	294, 404, 902
BslI	CCNNNNNNNGG	6 cut(s)	297, 700, 925, 982, 1230, 1297
BsmAI	GTCTC	3 cut(s)	122, 691, 785
BsmBI	CGTCTC	1 cut(s)	785
BsmFI	GGGAC	3 cut(s)	294, 404, 902
BsmI	GAATGC	1 cut(s)	1271
BsnI	GGCC	3 cut(s)	43, 127, 704
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	189, 422
Bsp143I	GATC	5 cut(s)	84, 397, 459, 577, 613
BspACI	CCGC	2 cut(s)	200, 251
BspANI	GGCC	3 cut(s)	43, 127, 704
BspCNI	CTCAG	7 cut(s)	334, 633, 661, 1081, 1198, 1259, 1372
BspHI	TCATGA	1 cut(s)	1044
BspLI	GGNNCC	3 cut(s)	97, 163, 369
BspMAI	CTGCAG	1 cut(s)	1171
BspOI	GCTAGC	1 cut(s)	1163
BspPI	GGATC	2 cut(s)	572, 621
BspQI	GCTCTTC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	755, 1312
BssECI	CCNNGG	2 cut(s)	99, 139
BssMI	GATC	5 cut(s)	84, 397, 459, 577, 613
BssNAI	GTATAC	1 cut(s)	1236
BssT1I	CCWWGG	2 cut(s)	99, 139
Bst1107I	GTATAC	1 cut(s)	1236
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	5 cut(s)	395, 430, 455, 479, 1340
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	129, 895, 1161
BstDEI	CTNAG	9 cut(s)	206, 342, 620, 669, 829, 1068, 1185, 1246, 1380
BstF5I	GGATG	4 cut(s)	490, 558, 568, 793
BstKTI	GATC	5 cut(s)	87, 400, 462, 580, 616
BstMAI	GTCTC	3 cut(s)	122, 691, 785
BstMBI	GATC	5 cut(s)	84, 397, 459, 577, 613
BstMWI	GCNNNNNNNGC	4 cut(s)	1169, 1224, 1367, 1376
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	2 cut(s)	658, 1167
BstSLI	GKGCMC	1 cut(s)	189
BstV1I	GCAGC	7 cut(s)	295, 590, 1051, 1150, 1153, 1181, 1348
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BstZ17I	GTATAC	1 cut(s)	1236
BsuRI	GGCC	3 cut(s)	43, 127, 704
BtsCI	GGATG	4 cut(s)	490, 558, 568, 793
BtsI	GCAGTG	2 cut(s)	1179, 1217
BtsIMutI	CAGTG	5 cut(s)	484, 628, 1179, 1193, 1217
Cac8I	GCNNGC	3 cut(s)	129, 895, 1161
CaiI	CAGNNNCTG	1 cut(s)	1307
CciI	TCATGA	1 cut(s)	1044
Cfr13I	GGNCC	5 cut(s)	41, 143, 319, 703, 763
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	3 cut(s)	634, 1336, 1341
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	4 cut(s)	700, 883, 982, 1045
CviQI	GTAC	3 cut(s)	634, 1336, 1341
DdeI	CTNAG	9 cut(s)	206, 342, 620, 669, 829, 1068, 1185, 1246, 1380
DpnI	GATC	5 cut(s)	86, 399, 461, 579, 615
DpnII	GATC	5 cut(s)	84, 397, 459, 577, 613
DriI	GACNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	420
Eco130I	CCWWGG	2 cut(s)	99, 139
Eco147I	AGGCCT	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	122
Eco32I	GATATC	2 cut(s)	592, 945
Eco47I	GGWCC	3 cut(s)	143, 319, 763
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	845
EcoICRI	GAGCTC	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	145
EcoRV	GATATC	2 cut(s)	592, 945
EcoT14I	CCWWGG	2 cut(s)	99, 139
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	2 cut(s)	99, 139
Esp3I	CGTCTC	1 cut(s)	785
FaeI	CATG	4 cut(s)	703, 886, 985, 1048
FalI	AAGNNNNNCTT	6 cut(s)	220, 252, 960, 992, 1242, 1274
FaqI	GGGAC	3 cut(s)	294, 404, 902
FatI	CATG	4 cut(s)	699, 882, 981, 1044
FauNDI	CATATG	1 cut(s)	1036
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	1235
Fnu4HI	GCNGC	9 cut(s)	201, 252, 309, 604, 1065, 1164, 1167, 1170, 1362
FokI	GGATG	4 cut(s)	497, 565, 575, 800
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	9 cut(s)	201, 252, 309, 604, 1065, 1164, 1167, 1170, 1362
FspBI	CTAG	7 cut(s)	378, 438, 536, 890, 963, 1121, 1160
GluI	GCNGC	9 cut(s)	201, 252, 309, 604, 1065, 1164, 1167, 1170, 1362
GsaI	CCCAGC	1 cut(s)	709
HaeIII	GGCC	3 cut(s)	43, 127, 704
HgaI	GACGC	1 cut(s)	824
Hin1II	CATG	4 cut(s)	703, 886, 985, 1048
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HindIII	AAGCTT	2 cut(s)	857, 1082
HinfI	GANTC	7 cut(s)	338, 491, 569, 673, 825, 1053, 1393
HphI	GGTGA	4 cut(s)	94, 208, 269, 796
Hpy166II	GTNNAC	5 cut(s)	35, 451, 766, 1000, 1236
Hpy188I	TCNGA	8 cut(s)	343, 496, 574, 942, 949, 1075, 1249, 1296
Hpy188III	TCNNGA	5 cut(s)	401, 850, 1045, 1262, 1390
Hpy8I	GTNNAC	5 cut(s)	35, 451, 766, 1000, 1236
HpyAV	CCTTC	5 cut(s)	169, 341, 604, 1108, 1291
HpyCH4III	ACNGT	5 cut(s)	395, 430, 455, 479, 1340
HpyCH4IV	ACGT	1 cut(s)	794
HpyCH4V	TGCA	7 cut(s)	4, 131, 311, 653, 897, 1169, 1327
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1169, 1224, 1367, 1376
HpyF3I	CTNAG	9 cut(s)	206, 342, 620, 669, 829, 1068, 1185, 1246, 1380
HpySE526I	ACGT	1 cut(s)	794
Hsp92II	CATG	4 cut(s)	703, 886, 985, 1048
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	84, 397, 459, 577, 613
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	1215
Lsp1109I	GCAGC	7 cut(s)	295, 590, 1051, 1150, 1153, 1181, 1348
LweI	GCATC	2 cut(s)	238, 487
MaeI	CTAG	7 cut(s)	378, 438, 536, 890, 963, 1121, 1160
MaeII	ACGT	1 cut(s)	794
MaeIII	GTNAC	6 cut(s)	355, 695, 874, 885, 1005, 1282
MalI	GATC	5 cut(s)	86, 399, 461, 579, 615
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	5 cut(s)	84, 397, 459, 577, 613
MboII	GAAGA	8 cut(s)	38, 500, 578, 587, 739, 865, 1093, 1262
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	2 cut(s)	189, 422
MluCI	AATT	8 cut(s)	220, 266, 405, 413, 1010, 1173, 1240, 1349
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	3 cut(s)	603, 865, 1379
MspR9I	CCNGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	1271
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	4 cut(s)	1169, 1224, 1367, 1376
NdeI	CATATG	1 cut(s)	1036
NdeII	GATC	5 cut(s)	84, 397, 459, 577, 613
NheI	GCTAGC	1 cut(s)	1159
NlaIII	CATG	4 cut(s)	703, 886, 985, 1048
NlaIV	GGNNCC	3 cut(s)	97, 163, 369
NmuCI	GTSAC	2 cut(s)	355, 874
PagI	TCATGA	1 cut(s)	1044
PceI	AGGCCT	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	21
PctI	GAATGC	1 cut(s)	1271
PfeI	GAWTC	7 cut(s)	338, 491, 569, 673, 825, 1053, 1393
PflMI	CCANNNNNTGG	1 cut(s)	1230
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	9 cut(s)	202, 253, 310, 605, 1066, 1165, 1168, 1171, 1363
Psp124BI	GAGCTC	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	97, 163, 369
PspPI	GGNCC	5 cut(s)	41, 143, 319, 703, 763
PstI	CTGCAG	1 cut(s)	1171
PstNI	CAGNNNCTG	1 cut(s)	1307
PsuI	RGATCY	1 cut(s)	577
PvuII	CAGCTG	3 cut(s)	603, 865, 1379
RsaI	GTAC	3 cut(s)	635, 1337, 1342
RsaNI	GTAC	3 cut(s)	634, 1336, 1341
RseI	CAYNNNNRTG	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	9 cut(s)	201, 252, 309, 604, 1065, 1164, 1167, 1170, 1362
Sau3AI	GATC	5 cut(s)	84, 397, 459, 577, 613
Sau96I	GGNCC	5 cut(s)	41, 143, 319, 703, 763
ScaI	AGTACT	1 cut(s)	1342
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	189, 422
SfaNI	GCATC	2 cut(s)	238, 487
SfcI	CTRYAG	2 cut(s)	658, 1167
SinI	GGWCC	3 cut(s)	143, 319, 763
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	3 cut(s)	1058, 1085, 1270
SmoI	CTYRAG	3 cut(s)	1058, 1085, 1270
Sse9I	AATT	8 cut(s)	220, 266, 405, 413, 1010, 1173, 1240, 1349
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	200, 251
SspMI	CTAG	7 cut(s)	378, 438, 536, 890, 963, 1121, 1160
SstI	GAGCTC	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	2 cut(s)	99, 139
TaaI	ACNGT	5 cut(s)	395, 430, 455, 479, 1340
TaiI	ACGT	1 cut(s)	797
TaqI	TCGA	3 cut(s)	87, 196, 594
TasI	AATT	8 cut(s)	220, 266, 405, 413, 1010, 1173, 1240, 1349
TatI	WGTACW	3 cut(s)	633, 1335, 1340
TauI	GCSGC	2 cut(s)	203, 254
TfiI	GAWTC	7 cut(s)	338, 491, 569, 673, 825, 1053, 1393
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	5 cut(s)	484, 628, 1186, 1193, 1217
TseFI	GTSAC	2 cut(s)	355, 874
TseI	GCWGC	7 cut(s)	308, 603, 1064, 1163, 1166, 1169, 1361
Tsp45I	GTSAC	2 cut(s)	355, 874
TspDTI	ATGAA	5 cut(s)	501, 579, 1033, 1146, 1269
TspRI	CASTG	5 cut(s)	484, 628, 1186, 1193, 1217
Van91I	CCANNNNNTGG	1 cut(s)	1230
VpaK11BI	GGWCC	3 cut(s)	143, 319, 763
XapI	RAATTY	1 cut(s)	1349
XmiI	GTMKAC	1 cut(s)	1235
XspI	CTAG	7 cut(s)	378, 438, 536, 890, 963, 1121, 1160
ZrmI	AGTACT	1 cut(s)	1342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.