Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009019

Physical Location & Seq

Genomic Coordinates Reverse (-)

14469656 .. 14473523

Gene Structure 3868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGGTTCCAAGGAGAACAATCAAGGACTTGTTAGGAACGCGAATTTCCAAGGTCCAAGATTGGGGGGGTCCAAGTTTGTGAAGGAGATTGGGCACAATCACCGGGCGGCATTAAGCAATATCACCAATTTCAAAAGAGAGGCTTCTGGGAATGTTGCGGCTGGTGATAAAAAGTTGTCAAATCTGGGCCATAGACCCATAACAAGGAGGTTTTCTGCACAAATGATCCAGCAATGCCCAAAGGAATCTGAGGATGTGACTGTGACTACATTGGTTCCAAATGCTAGTGGTGTTAGGGAGTATGATCAGGGAACTAAGAAACCGAGCTCATCTACTGTCAATCCTAATGGTTTTGTGGACTGTGAGATCATAGATGTGGAGGATAGTGAGGATGAAGATTCTGATGCTGTGCCAATGTATGTGAAGCACACAGAAGCAATGCTAGATGAGATTGATAGGATGGAGGAGGATGAGGAATCGGAAGATCCTATTATGGATATCGACACCAGCTGCATGAAGGATGTACTCAGTGTTGTGAAGTATATAGATGACATCTATGCACACTACAGGAAAACTGAGAATCAAAGCTGTGTCTCTCCAAGTTACATGGCTCAGCAACCTGACATCAATGAGAAGATGAGGGCTATTCTTATTGACTGGCTCATTGAGGTCCACTACAAGTTTGAGCTTATGGATGAGACGTTATTCCTCACCATCAATCTTATAGACAGATTCTTAGAGCGCCAAGTGGTGGTCAGAAAGAAGCTTCAGCTGGTTGGAGTGACAGCCATGTTACTAGCCTGCAAGTATGAGGAGGTTTCTGTCCCAATCGTGGAGGATTTTGTTCTGATATCAGATAAGGCATATACAAGGGAAGATGTCCTTGGCATGGAGAAGTCAATGGTTAACAAGTTACAATTCAACTTTTCTGTTCCTACCCCATATGTGTTCATGAGGAGATTCCTGAAGGCTGCTCAGTCTGACAGAAAGCTTGAGCTTCTGTCCTTCTTCCTCATTGAGCTATGCTTAGTGGAGTACGAAATGCTAAAGTTTCCACCATCTCTGCTAGCTGCTGCAGCGATTTACACTGCTCAGTGTAGTCTTTCAAAGTTCAAGCAGTGGAGCAAAACCTGCGAGTGGTATACCAATTACTCAGAAGATGAACTTCAAGAATGCTCAAGGATGATGGTTACTTTCCATCAGAAGGCTGAAACCGGTAGGCTAACAGGAGTGCATAGGAAATACAGTACTTGGAAGTTTGGCTATGCTGCTAAAGCTGAACCAGCTGAGTTCCTCCTGAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

436

Amino Acids

49.77

Weight (kDa)

5.23

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	184 - 309	1.5e-49	Cyclin, N-terminal domain
Cyclin_C	PF02984	312 - 428	1.2e-38	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20610 AT1G76310 AT1G76310 AT1G76310 AT1G76310
fragaria_vesca	FvH4_2g16590
malus_domestica	MD05G1134100.v1.1 MD10G1139200.v1.1
prunus_persica	Prupe.8G177900_v2.0.a1
pyrus_communis	pycom05g13080 pycom10g11830
rosa_chinensis	RchiOBHm_Chr6g0280651
rosa_laevigata	RLG00000013039
rosa_multiflora	Rmu_co8479241.1_g000001 Rmu_sc0000976.1_g000005
rosa_roxburghii	Rroxscaffold_7G00187790
rosa_rugosa	Rorug06G0133400 Rorug06G0133400
rosa_samantha	Rh6AG246000 Rh6BG248300 Rh6CG249600
rosa_wichuraiana	Rw6G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1139
AccB7I	CCANNNNNTGG	1 cut(s)	751
AccI	GTMKAC	1 cut(s)	1142
AccII	CGCG	1 cut(s)	41
AciI	CCGC	2 cut(s)	107, 158
AclWI	GGATC	2 cut(s)	220, 479
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	2 cut(s)	752, 986
AfaI	GTAC	3 cut(s)	525, 1037, 1249
AfiI	CCNNNNNNNGG	7 cut(s)	62, 204, 751, 832, 889, 1137, 1204
AgeI	ACCGGT	1 cut(s)	1214
AgsI	TTSAA	5 cut(s)	133, 922, 1107, 1114, 1169
AjuI	GAANNNNNNNTTGG	2 cut(s)	867, 899
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	598, 692
AlwI	GGATC	2 cut(s)	220, 479
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	6 cut(s)	510, 971, 1070, 1073, 1076, 1268
ApoI	RAATTY	1 cut(s)	43
AsiGI	ACCGGT	1 cut(s)	1214
AspLEI	GCGC	1 cut(s)	744
AspS9I	GGNCC	4 cut(s)	53, 69, 187, 670
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	4 cut(s)	92, 115, 176, 703
AsuNHI	GCTAGC	1 cut(s)	1066
AvaII	GGWCC	3 cut(s)	53, 69, 670
BaeGI	GKGCMC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	6 cut(s)	497, 958, 1057, 1060, 1088, 1255
BccI	CCATC	5 cut(s)	454, 722, 1066, 1180, 1206
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	598, 692
BfaI	CTAG	4 cut(s)	285, 443, 797, 1067
BfmI	CTRYAG	2 cut(s)	565, 1074
BfoI	RGCGCY	1 cut(s)	745
BfuAI	ACCTGC	1 cut(s)	1139
BisI	GCNGC	8 cut(s)	108, 159, 511, 972, 1071, 1074, 1077, 1269
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	8 cut(s)	109, 160, 512, 973, 1072, 1075, 1078, 1270
BmcAI	AGTACT	1 cut(s)	1249
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	3 cut(s)	53, 69, 670
BmgT120I	GGNCC	4 cut(s)	53, 69, 187, 670
BmiI	GGNNCC	3 cut(s)	7, 70, 276
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	394
BmtI	GCTAGC	1 cut(s)	1070
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	1013, 1162
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	9, 49, 883
BsaWI	WCCGGW	1 cut(s)	1214
Bsc4I	CCNNNNNNNGG	7 cut(s)	62, 204, 751, 832, 889, 1137, 1204
Bse118I	RCCGGY	1 cut(s)	1214
Bse1I	ACTGG	1 cut(s)	662
Bse3DI	GCAATG	2 cut(s)	239, 444
BseDI	CCNNGG	3 cut(s)	9, 49, 883
BseGI	GGATG	7 cut(s)	259, 397, 465, 475, 526, 700, 1188
BseLI	CCNNNNNNNGG	7 cut(s)	62, 204, 751, 832, 889, 1137, 1204
BseMI	GCAATG	2 cut(s)	239, 444
BseMII	CTCAG	8 cut(s)	240, 541, 567, 626, 989, 1106, 1167, 1278
BseNI	ACTGG	1 cut(s)	662
BseRI	GAGGAG	3 cut(s)	479, 827, 970
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	6 cut(s)	497, 958, 1057, 1060, 1088, 1255
BsgI	GTGCAG	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	189
BshTI	ACCGGT	1 cut(s)	1214
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	103, 1215
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	7 cut(s)	62, 204, 751, 832, 889, 1137, 1204
BsmAI	GTCTC	2 cut(s)	598, 692
BsmBI	CGTCTC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	809
BsmI	GAATGC	1 cut(s)	1178
BsnI	GGCC	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	96, 329
Bsp143I	GATC	4 cut(s)	225, 304, 366, 484
Bsp1720I	GCTNAGC	1 cut(s)	612
BspACI	CCGC	2 cut(s)	107, 158
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	8 cut(s)	241, 540, 568, 625, 988, 1105, 1166, 1279
BspFNI	CGCG	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	951
BspLI	GGNNCC	3 cut(s)	7, 70, 276
BspMAI	CTGCAG	1 cut(s)	1078
BspMI	ACCTGC	1 cut(s)	1139
BspOI	GCTAGC	1 cut(s)	1070
BspPI	GGATC	2 cut(s)	220, 479
BsrDI	GCAATG	2 cut(s)	239, 444
BsrFI	RCCGGY	1 cut(s)	1214
BsrI	ACTGG	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	1214
BssECI	CCNNGG	3 cut(s)	9, 49, 883
BssMI	GATC	4 cut(s)	225, 304, 366, 484
BssNAI	GTATAC	1 cut(s)	1143
BssT1I	CCWWGG	3 cut(s)	9, 49, 883
Bst1107I	GTATAC	1 cut(s)	1143
Bst4CI	ACNGT	4 cut(s)	262, 337, 362, 1247
BstAPI	GCANNNNNTGC	1 cut(s)	1131
BstC8I	GCNNGC	2 cut(s)	802, 1068
BstF5I	GGATG	7 cut(s)	259, 397, 465, 475, 526, 700, 1188
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	4 cut(s)	228, 307, 369, 487
BstMAI	GTCTC	2 cut(s)	598, 692
BstMBI	GATC	4 cut(s)	225, 304, 366, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	1076, 1131, 1274, 1283
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	565, 1074
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	6 cut(s)	497, 958, 1057, 1060, 1088, 1255
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BstZ17I	GTATAC	1 cut(s)	1143
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	7 cut(s)	259, 397, 465, 475, 526, 700, 1188
BtsI	GCAGTG	2 cut(s)	1086, 1124
BtsIMutI	CAGTG	4 cut(s)	535, 1086, 1100, 1124
BveI	ACCTGC	1 cut(s)	1139
Cac8I	GCNNGC	2 cut(s)	802, 1068
CciI	TCATGA	1 cut(s)	951
CfoI	GCGC	1 cut(s)	744
Cfr10I	RCCGGY	1 cut(s)	1214
Cfr13I	GGNCC	4 cut(s)	53, 69, 187, 670
Csp6I	GTAC	3 cut(s)	524, 1036, 1248
CspAI	ACCGGT	1 cut(s)	1214
CviAII	CATG	5 cut(s)	514, 607, 790, 889, 952
CviQI	GTAC	3 cut(s)	524, 1036, 1248
DpnI	GATC	4 cut(s)	227, 306, 368, 486
DpnII	GATC	4 cut(s)	225, 304, 366, 484
Ecl136II	GAGCTC	1 cut(s)	327
Eco130I	CCWWGG	3 cut(s)	9, 49, 883
Eco24I	GRGCYC	1 cut(s)	329
Eco32I	GATATC	2 cut(s)	499, 852
Eco47I	GGWCC	3 cut(s)	53, 69, 670
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	2 cut(s)	752, 986
EcoICRI	GAGCTC	1 cut(s)	327
EcoRV	GATATC	2 cut(s)	499, 852
EcoT14I	CCWWGG	3 cut(s)	9, 49, 883
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	3 cut(s)	9, 49, 883
Esp3I	CGTCTC	1 cut(s)	692
FaeI	CATG	5 cut(s)	517, 610, 793, 892, 955
FalI	AAGNNNNNCTT	6 cut(s)	127, 159, 867, 899, 1149, 1181
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	5 cut(s)	513, 606, 789, 888, 951
FauNDI	CATATG	1 cut(s)	943
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	1142
Fnu4HI	GCNGC	8 cut(s)	108, 159, 511, 972, 1071, 1074, 1077, 1269
FokI	GGATG	7 cut(s)	266, 404, 472, 482, 533, 707, 1195
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	8 cut(s)	108, 159, 511, 972, 1071, 1074, 1077, 1269
FspBI	CTAG	4 cut(s)	285, 443, 797, 1067
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	8 cut(s)	108, 159, 511, 972, 1071, 1074, 1077, 1269
HaeII	RGCGCY	1 cut(s)	745
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	103, 1215
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	5 cut(s)	517, 610, 793, 892, 955
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HindIII	AAGCTT	2 cut(s)	764, 989
HinfI	GANTC	7 cut(s)	245, 398, 476, 580, 732, 960, 1300
HpaI	GTTAAC	1 cut(s)	907
HpaII	CCGG	2 cut(s)	103, 1215
HphI	GGTGA	4 cut(s)	92, 115, 176, 703
Hpy166II	GTNNAC	4 cut(s)	358, 673, 907, 1143
Hpy188I	TCNGA	9 cut(s)	250, 403, 481, 758, 849, 856, 982, 1156, 1203
Hpy188III	TCNNGA	4 cut(s)	952, 964, 1169, 1297
Hpy8I	GTNNAC	4 cut(s)	358, 673, 907, 1143
HpyAV	CCTTC	5 cut(s)	76, 511, 961, 1015, 1198
HpyCH4III	ACNGT	4 cut(s)	262, 337, 362, 1247
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	6 cut(s)	218, 513, 560, 804, 1076, 1234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1076, 1131, 1274, 1283
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	5 cut(s)	517, 610, 793, 892, 955
HspAI	GCGC	1 cut(s)	742
Ksp22I	TGATCA	1 cut(s)	304
KspAI	GTTAAC	1 cut(s)	907
Kzo9I	GATC	4 cut(s)	225, 304, 366, 484
LmnI	GCTCC	1 cut(s)	1122
Lsp1109I	GCAGC	6 cut(s)	497, 958, 1057, 1060, 1088, 1255
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	4 cut(s)	285, 443, 797, 1067
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	7 cut(s)	256, 262, 602, 781, 792, 912, 1189
MalI	GATC	4 cut(s)	227, 306, 368, 486
MboI	GATC	4 cut(s)	225, 304, 366, 484
MboII	GAAGA	6 cut(s)	407, 494, 646, 887, 1000, 1169
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	2 cut(s)	96, 329
MluCI	AATT	4 cut(s)	43, 127, 917, 1147
MmeI	TCCRAC	1 cut(s)	757
MseI	TTAA	2 cut(s)	113, 906
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	3 cut(s)	510, 772, 1286
MspI	CCGG	2 cut(s)	103, 1215
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	1178
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	4 cut(s)	1076, 1131, 1274, 1283
NciI	CCSGG	1 cut(s)	104
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	4 cut(s)	225, 304, 366, 484
NheI	GCTAGC	1 cut(s)	1066
NlaIII	CATG	5 cut(s)	517, 610, 793, 892, 955
NlaIV	GGNNCC	3 cut(s)	7, 70, 276
NmuCI	GTSAC	3 cut(s)	256, 262, 781
PagI	TCATGA	1 cut(s)	951
PctI	GAATGC	1 cut(s)	1178
PfeI	GAWTC	7 cut(s)	245, 398, 476, 580, 732, 960, 1300
PflMI	CCANNNNNTGG	1 cut(s)	751
PinAI	ACCGGT	1 cut(s)	1214
PkrI	GCNGC	8 cut(s)	109, 160, 512, 973, 1072, 1075, 1078, 1270
Psp124BI	GAGCTC	1 cut(s)	329
PspN4I	GGNNCC	3 cut(s)	7, 70, 276
PspPI	GGNCC	4 cut(s)	53, 69, 187, 670
PstI	CTGCAG	1 cut(s)	1078
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	3 cut(s)	510, 772, 1286
RsaI	GTAC	3 cut(s)	525, 1037, 1249
RsaNI	GTAC	3 cut(s)	524, 1036, 1248
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	113, 906
SatI	GCNGC	8 cut(s)	108, 159, 511, 972, 1071, 1074, 1077, 1269
Sau3AI	GATC	4 cut(s)	225, 304, 366, 484
Sau96I	GGNCC	4 cut(s)	53, 69, 187, 670
ScaI	AGTACT	1 cut(s)	1249
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	96, 329
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	2 cut(s)	565, 1074
SinI	GGWCC	3 cut(s)	53, 69, 670
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	992, 1177
SmoI	CTYRAG	2 cut(s)	992, 1177
Sse9I	AATT	4 cut(s)	43, 127, 917, 1147
SsiI	CCGC	2 cut(s)	107, 158
SspMI	CTAG	4 cut(s)	285, 443, 797, 1067
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	3 cut(s)	9, 49, 883
TaaI	ACNGT	4 cut(s)	262, 337, 362, 1247
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	1 cut(s)	501
TasI	AATT	4 cut(s)	43, 127, 917, 1147
TatI	WGTACW	2 cut(s)	523, 1247
TauI	GCSGC	2 cut(s)	110, 161
TfiI	GAWTC	7 cut(s)	245, 398, 476, 580, 732, 960, 1300
Tru1I	TTAA	2 cut(s)	113, 906
Tru9I	TTAA	2 cut(s)	113, 906
TscAI	CASTG	4 cut(s)	535, 1093, 1100, 1124
TseFI	GTSAC	3 cut(s)	256, 262, 781
TseI	GCWGC	6 cut(s)	510, 971, 1070, 1073, 1076, 1268
Tsp45I	GTSAC	3 cut(s)	256, 262, 781
TspDTI	ATGAA	4 cut(s)	408, 530, 940, 1176
TspRI	CASTG	4 cut(s)	535, 1093, 1100, 1124
Van91I	CCANNNNNTGG	1 cut(s)	751
VpaK11BI	GGWCC	3 cut(s)	53, 69, 670
XapI	RAATTY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	1142
XspI	CTAG	4 cut(s)	285, 443, 797, 1067
ZrmI	AGTACT	1 cut(s)	1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.