Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Forward (+)

7252111 .. 7253747

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCTCTTTCTTCACCTTCAAGAATCCTCTGTTTTGCTCTTGCCTTATCCGCTGCTTCTCTCTCCCTCTCTTTCGCTTCTTCCCACGATTACTCCATCGTTGGATACTCCCCCGAGGATTTGGAATCTCATGACAAACTCATAGAACTCTTCGAAAACTGGATCTCAAATTTTGAGAAAGCTTATGAAACCGTTGAAGAGAAGTTTCTTAGGTTCGAAGTTTTCAAGGATAATCTAAAGCACATCGATGAGACTAACAAGAAAGGGAAAAGCTACTGGCTCGGGCTCAACGAGTTTGCGGATTTGAGCCATGAGGAGTTCAAGAAAATGTATTTAGGGCTCAAGACTGATATAGTGAGACGCGATGAAGAAAGATCTTACGCAGAGTTCGCTTACAGGGACGTCGAAGCTGTTCCTAAGTCTGTTGACTGGAGAAAGAAAGGAGCTGTGGCGGAAGTTAAGAACCAGGGCTCTTGTGGAAGTTGTTGGGCGTTTTCGACAGTAGCAGCTGTCGAAGGTATAAACAAGATTGTGACAGGAAACTTGACAACATTGTCAGAACAAGAACTCATAGACTGTGACACGACCTACAACAATGGCTGCAACGGTGGTCTCATGGACTATGCCTTTGAGTACATTGTTAAGAACGGAGGTCTACGCAAGGAAGAAGATTATCCTTACTCTATGGAAGAAGGAACTTGCGAGATGCAAAAGGATGAATCTGAAACAGTAACCATTAATGGACACCAAGACGTACCTACTAATGATGAGAAGAGTCTCTTGAAGGCATTGGCTCATCAGCCTCTCAGTGTCGCCATTGATGCATCTGGTAGAGAGTTCCAGTTCTATAGCGGCGGCGTGTTTGATGGGCGGTGCGGGGTTGATCTTGACCACGGTGTGGCTGCGGTTGGGTATGGATCAAGCAAGGGTTCAGATTACATCATTGTGAAGAATTCTTGGGGACCAAAATGGGGAGAAAAAGGTTACATCAGGCTGAAGAGGAACACTGGGAAACCAGAGGGTCTCTGTGGAATCAACAAGATGGCTTCTTTCCCCACCAAAACTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0030312 GO:0032502 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

356

Amino Acids

39.71

Weight (kDa)

5.16

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	51 - 107	4.8e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	138 - 352	4.5e-83	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	553
AatII	GACGTC	1 cut(s)	405
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	655
AccII	CGCG	1 cut(s)	363
AciI	CCGC	8 cut(s)	51, 299, 452, 852, 855, 871, 876, 905
AclWI	GGATC	2 cut(s)	170, 925
AcsI	RAATTY	2 cut(s)	169, 952
AcuI	CTGAAG	1 cut(s)	1016
AcyI	GRCGYC	1 cut(s)	402
AdeI	CACNNNGTG	1 cut(s)	898
AfaI	GTAC	2 cut(s)	635, 756
AfiI	CCNNNNNNNGG	2 cut(s)	898, 971
AgsI	TTSAA	5 cut(s)	21, 197, 226, 322, 784
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	5 cut(s)	182, 273, 410, 446, 509
AluI	AGCT	5 cut(s)	182, 273, 410, 446, 509
Alw26I	GTCTC	5 cut(s)	245, 352, 617, 782, 1028
AlwI	GGATC	2 cut(s)	170, 925
Ama87I	CYCGRG	2 cut(s)	113, 281
ApeKI	GCWGC	4 cut(s)	53, 506, 600, 902
ApoI	RAATTY	2 cut(s)	169, 952
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
AseI	ATTAAT	1 cut(s)	738
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	962
AsuHPI	GGTGA	1 cut(s)	6
AsuII	TTCGAA	2 cut(s)	153, 216
AvaI	CYCGRG	2 cut(s)	113, 281
AvaII	GGWCC	1 cut(s)	962
BanII	GRGCYC	3 cut(s)	288, 342, 473
BbvI	GCAGC	4 cut(s)	40, 518, 587, 889
BccI	CCATC	3 cut(s)	104, 860, 1036
BciT130I	CCWGG	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	98
BcoDI	GTCTC	5 cut(s)	245, 352, 617, 782, 1028
BfmI	CTRYAG	1 cut(s)	847
BfuI	GTATCC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	374
BisI	GCNGC	6 cut(s)	54, 507, 601, 853, 856, 903
BlsI	GCNGC	6 cut(s)	55, 508, 602, 854, 857, 904
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	962
BmeT110I	CYCGRG	2 cut(s)	113, 281
BmgT120I	GGNCC	1 cut(s)	962
BmiI	GGNNCC	1 cut(s)	963
BmrFI	CCNGG	1 cut(s)	467
BmrI	ACTGGG	1 cut(s)	1017
BmsI	GCATC	3 cut(s)	696, 811, 833
BmuI	ACTGGG	1 cut(s)	1017
BpmI	CTGGAG	1 cut(s)	451
Bpu14I	TTCGAA	2 cut(s)	153, 216
BpuEI	CTTGAG	1 cut(s)	326
Bsa29I	ATCGAT	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	402
BsaI	GGTCTC	2 cut(s)	617, 1028
BsaJI	CCNNGG	3 cut(s)	114, 466, 892
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	2 cut(s)	898, 971
Bse1I	ACTGG	5 cut(s)	164, 281, 434, 841, 1012
BseBI	CCWGG	1 cut(s)	467
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	114, 466, 892
BseGI	GGATG	1 cut(s)	721
BseLI	CCNNNNNNNGG	2 cut(s)	898, 971
BseMII	CTCAG	1 cut(s)	820
BseNI	ACTGG	5 cut(s)	164, 281, 434, 841, 1012
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	4 cut(s)	40, 518, 587, 889
Bsh1236I	CGCG	1 cut(s)	363
BshVI	ATCGAT	1 cut(s)	246
BsiHKCI	CYCGRG	2 cut(s)	113, 281
BslFI	GGGAC	2 cut(s)	413, 975
BslI	CCNNNNNNNGG	2 cut(s)	898, 971
BsmAI	GTCTC	5 cut(s)	245, 352, 617, 782, 1028
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	413, 975
Bso31I	GGTCTC	2 cut(s)	617, 1028
BsoBI	CYCGRG	2 cut(s)	113, 281
Bsp119I	TTCGAA	2 cut(s)	153, 216
Bsp1286I	GDGCHC	3 cut(s)	288, 342, 473
Bsp143I	GATC	4 cut(s)	162, 374, 883, 917
BspACI	CCGC	8 cut(s)	51, 299, 452, 852, 855, 871, 876, 905
BspCNI	CTCAG	1 cut(s)	819
BspDI	ATCGAT	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	963
BspPI	GGATC	2 cut(s)	170, 925
BspT104I	TTCGAA	2 cut(s)	153, 216
BspTNI	GGTCTC	2 cut(s)	617, 1028
BsrI	ACTGG	5 cut(s)	164, 281, 434, 841, 1012
BssECI	CCNNGG	3 cut(s)	114, 466, 892
BssMI	GATC	4 cut(s)	162, 374, 883, 917
BssNI	GRCGYC	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	6 cut(s)	193, 502, 578, 608, 730, 896
Bst6I	CTCTTC	4 cut(s)	155, 192, 767, 992
BstACI	GRCGYC	1 cut(s)	402
BstBI	TTCGAA	2 cut(s)	153, 216
BstDEI	CTNAG	4 cut(s)	209, 417, 806, 1065
BstDSI	CCRYGG	1 cut(s)	892
BstF5I	GGATG	1 cut(s)	721
BstFNI	CGCG	1 cut(s)	363
BstKTI	GATC	4 cut(s)	165, 377, 886, 920
BstMAI	GTCTC	5 cut(s)	245, 352, 617, 782, 1028
BstMBI	GATC	4 cut(s)	162, 374, 883, 917
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 389, 821
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	847
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	4 cut(s)	40, 518, 587, 889
BstX2I	RGATCY	2 cut(s)	162, 374
BstYI	RGATCY	2 cut(s)	162, 374
Bsu15I	ATCGAT	1 cut(s)	246
BsuI	GTATCC	1 cut(s)	98
BsuTUI	ATCGAT	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	892
BtgZI	GCGATG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	721
BtsIMutI	CAGTG	2 cut(s)	814, 1005
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	962
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	634, 755
CviAII	CATG	3 cut(s)	131, 311, 616
CviQI	GTAC	2 cut(s)	634, 755
DdeI	CTNAG	4 cut(s)	209, 417, 806, 1065
DpnI	GATC	4 cut(s)	164, 376, 885, 919
DpnII	GATC	4 cut(s)	162, 374, 883, 917
DraIII	CACNNNGTG	1 cut(s)	898
DrdI	GACNNNNNNGTC	1 cut(s)	553
DseDI	GACNNNNNNGTC	1 cut(s)	553
Eam1104I	CTCTTC	4 cut(s)	155, 192, 767, 992
EarI	CTCTTC	4 cut(s)	155, 192, 767, 992
EciI	GGCGGA	1 cut(s)	467
Eco24I	GRGCYC	3 cut(s)	288, 342, 473
Eco31I	GGTCTC	2 cut(s)	617, 1028
Eco47I	GGWCC	1 cut(s)	962
Eco57I	CTGAAG	1 cut(s)	1016
Eco88I	CYCGRG	2 cut(s)	113, 281
EcoRI	GAATTC	1 cut(s)	952
EcoRII	CCWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	826
EcoT38I	GRGCYC	3 cut(s)	288, 342, 473
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	3 cut(s)	134, 314, 619
FalI	AAGNNNNNCTT	2 cut(s)	764, 796
FaqI	GGGAC	2 cut(s)	413, 975
FatI	CATG	3 cut(s)	130, 310, 615
FauI	CCCGC	1 cut(s)	869
FblI	GTMKAC	1 cut(s)	655
Fnu4HI	GCNGC	6 cut(s)	54, 507, 601, 853, 856, 903
FokI	GGATG	1 cut(s)	728
FriOI	GRGCYC	3 cut(s)	288, 342, 473
Fsp4HI	GCNGC	6 cut(s)	54, 507, 601, 853, 856, 903
GluI	GCNGC	6 cut(s)	54, 507, 601, 853, 856, 903
GsuI	CTGGAG	1 cut(s)	451
HgaI	GACGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	3 cut(s)	134, 314, 619
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	5 cut(s)	24, 125, 719, 775, 1032
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	427, 656
Hpy188I	TCNGA	3 cut(s)	559, 724, 934
Hpy188III	TCNNGA	6 cut(s)	21, 131, 322, 343, 781, 887
Hpy8I	GTNNAC	2 cut(s)	427, 656
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	4 cut(s)	27, 509, 686, 778
HpyCH4III	ACNGT	6 cut(s)	193, 502, 578, 608, 730, 896
HpyCH4IV	ACGT	2 cut(s)	402, 753
HpyCH4V	TGCA	3 cut(s)	603, 709, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 389, 821
HpyF3I	CTNAG	4 cut(s)	209, 417, 806, 1065
HpySE526I	ACGT	2 cut(s)	402, 753
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	134, 314, 619
Kzo9I	GATC	4 cut(s)	162, 374, 883, 917
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	4 cut(s)	40, 518, 587, 889
LweI	GCATC	3 cut(s)	696, 811, 833
MaeII	ACGT	2 cut(s)	402, 753
MaeIII	GTNAC	4 cut(s)	532, 578, 730, 983
MalI	GATC	4 cut(s)	164, 376, 885, 919
MboI	GATC	4 cut(s)	162, 374, 883, 917
MflI	RGATCY	2 cut(s)	162, 374
MhlI	GDGCHC	3 cut(s)	288, 342, 473
MluCI	AATT	2 cut(s)	169, 952
MlyI	GAGTC	1 cut(s)	784
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	8 cut(s)	38, 77, 109, 307, 644, 813, 993, 1012
Mph1103I	ATGCAT	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	3 cut(s)	459, 642, 738
MslI	CAYNNNNRTG	2 cut(s)	246, 944
MspA1I	CMGCKG	2 cut(s)	53, 509
MspR9I	CCNGG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	3 cut(s)	50, 389, 821
NdeII	GATC	4 cut(s)	162, 374, 883, 917
NlaIII	CATG	3 cut(s)	134, 314, 619
NlaIV	GGNNCC	1 cut(s)	963
NmuCI	GTSAC	2 cut(s)	532, 578
NsiI	ATGCAT	1 cut(s)	826
NspV	TTCGAA	2 cut(s)	153, 216
PagI	TCATGA	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	24, 125, 719, 1032
PflMI	CCANNNNNTGG	1 cut(s)	898
PkrI	GCNGC	6 cut(s)	55, 508, 602, 854, 857, 904
PleI	GAGTC	1 cut(s)	783
PpsI	GAGTC	1 cut(s)	783
PshBI	ATTAAT	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	963
PspPI	GGNCC	1 cut(s)	962
PsuI	RGATCY	2 cut(s)	162, 374
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	2 cut(s)	635, 756
RsaNI	GTAC	2 cut(s)	634, 755
RseI	CAYNNNNRTG	2 cut(s)	246, 944
SaqAI	TTAA	3 cut(s)	459, 642, 738
SatI	GCNGC	6 cut(s)	54, 507, 601, 853, 856, 903
Sau3AI	GATC	4 cut(s)	162, 374, 883, 917
Sau96I	GGNCC	1 cut(s)	962
SchI	GAGTC	1 cut(s)	784
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	3 cut(s)	288, 342, 473
SfaNI	GCATC	3 cut(s)	696, 811, 833
SfcI	CTRYAG	1 cut(s)	847
SfuI	TTCGAA	2 cut(s)	153, 216
SinI	GGWCC	1 cut(s)	962
SmiMI	CAYNNNNRTG	2 cut(s)	246, 944
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	169, 952
SsiI	CCGC	8 cut(s)	51, 299, 452, 852, 855, 871, 876, 905
StyD4I	CCNGG	1 cut(s)	465
TaaI	ACNGT	6 cut(s)	193, 502, 578, 608, 730, 896
TaiI	ACGT	2 cut(s)	405, 756
TaqI	TCGA	6 cut(s)	153, 216, 246, 405, 497, 513
TasI	AATT	2 cut(s)	169, 952
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	2 cut(s)	855, 858
TfiI	GAWTC	4 cut(s)	24, 125, 719, 1032
Tru1I	TTAA	3 cut(s)	459, 642, 738
Tru9I	TTAA	3 cut(s)	459, 642, 738
TscAI	CASTG	2 cut(s)	814, 1012
TseFI	GTSAC	2 cut(s)	532, 578
TseI	GCWGC	4 cut(s)	53, 506, 600, 902
Tsp45I	GTSAC	2 cut(s)	532, 578
TspDTI	ATGAA	3 cut(s)	201, 381, 732
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	2 cut(s)	814, 1012
Van91I	CCANNNNNTGG	1 cut(s)	898
VpaK11BI	GGWCC	1 cut(s)	962
VspI	ATTAAT	1 cut(s)	738
XapI	RAATTY	2 cut(s)	169, 952
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	411
ZraI	GACGTC	1 cut(s)	403
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.