Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001705.1

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Forward (+)

16525 .. 17806

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001705.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggacaagttcattgagctcttcgagtcatggatatcgaaacatggcaagatttaccacaacatggaggagaagctccataagtttgagatattcaaagacaatgtcaagcatattaatgaaaggaataagaagcttgatgttgacagctactggcttggattgaatgagtttgctgacttgagccatgaagagttcaagagcaagtacttgggcctaaaaggggaatccccaagaaggagagactcctctgaagaagggttcagttaccgtgatttcgaccaagaggcattgcccaagtctgtggactggagaaataaaggagctgttactccagtcaagaaccaaggttcatgtggtagctgttgggcattttctacagttgctgctgttgaaggcataaaccagatagtcacaggaaacctaatatcgctgtccgaacagcaactgatagattgtgacaattcattcaacgatggctgcaatggcggtttgatggactacgcttttcaatttatcgtctctaatggtgggcttcacaaggaggaagaatacccctatatcatggacgaaggaacttgtgaggaatcagagggagaatcagaggtggtgaccatatctggttatcaagatgtgcctcgaaatagtgaccaagctctcctcaaggcactggctcgccagcccattagtgttgctattgacgcctctgacaaagatttccagttctacagtgggggtgtgttcaacgggccatgtggaactcagctaactcatggtgtaacagcagttggctatggaacatcaggggggttggattacatcattgtgaagaactcatggggactagagtggggagagaagggatacataaggatgaagagaaacacaggaaagccagaaggaatctgcggtatcaacaaattggcttcatatcccaccaagaagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

316

Amino Acids

35.37

Weight (kDa)

5.23

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	64
AciI	CCGC	2 cut(s)	489, 909
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	64, 223, 237
AgsI	TTSAA	7 cut(s)	97, 166, 199, 395, 472, 512, 745
AluBI	AGCT	8 cut(s)	19, 76, 136, 150, 326, 363, 656, 766
AluI	AGCT	8 cut(s)	19, 76, 136, 150, 326, 363, 656, 766
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	237, 526
AlwNI	CAGNNNCTG	3 cut(s)	153, 386, 448
AoxI	GGCC	2 cut(s)	214, 749
ApeKI	GCWGC	2 cut(s)	386, 480
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AseI	ATTAAT	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	214, 749
AsuHPI	GGTGA	1 cut(s)	622
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	373, 467
BccI	CCATC	2 cut(s)	470, 490
BciVI	GTATCC	1 cut(s)	857
BcoDI	GTCTC	2 cut(s)	237, 526
BfaI	CTAG	1 cut(s)	845
BfmI	CTRYAG	2 cut(s)	378, 727
BfuI	GTATCC	1 cut(s)	857
BisI	GCNGC	2 cut(s)	387, 481
BlsI	GCNGC	2 cut(s)	388, 482
BmcAI	AGTACT	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	214, 749
BpmI	CTGGAG	2 cut(s)	318, 331
BpuEI	CTTGAG	2 cut(s)	202, 647
BsaHI	GRCGYC	1 cut(s)	702
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 223, 237
Bse1I	ACTGG	5 cut(s)	158, 314, 335, 675, 721
Bse3DI	GCAATG	2 cut(s)	290, 490
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	879
BseLI	CCNNNNNNNGG	3 cut(s)	64, 223, 237
BseMI	GCAATG	2 cut(s)	290, 490
BseMII	CTCAG	1 cut(s)	776
BseNI	ACTGG	5 cut(s)	158, 314, 335, 675, 721
BseRI	GAGGAG	3 cut(s)	83, 238, 650
BseXI	GCAGC	2 cut(s)	373, 467
BshFI	GGCC	2 cut(s)	216, 751
BsiHKAI	GWGCWC	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	855
BslI	CCNNNNNNNGG	3 cut(s)	64, 223, 237
BsmAI	GTCTC	2 cut(s)	237, 526
BsmBI	CGTCTC	1 cut(s)	526
BsmFI	GGGAC	1 cut(s)	855
BsnI	GGCC	2 cut(s)	216, 751
Bsp1286I	GDGCHC	1 cut(s)	21
BspACI	CCGC	2 cut(s)	489, 909
BspANI	GGCC	2 cut(s)	216, 751
BspCNI	CTCAG	1 cut(s)	775
BspQI	GCTCTTC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	290, 490
BsrI	ACTGG	5 cut(s)	158, 314, 335, 675, 721
BssECI	CCNNGG	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	3 cut(s)	272, 382, 731
Bst6I	CTCTTC	3 cut(s)	26, 186, 872
BstACI	GRCGYC	1 cut(s)	702
BstC8I	GCNNGC	2 cut(s)	676, 680
BstDEI	CTNAG	1 cut(s)	762
BstEII	GGTNACC	1 cut(s)	610
BstF5I	GGATG	1 cut(s)	879
BstMAI	GTCTC	2 cut(s)	237, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	486, 701
BstPI	GGTNACC	1 cut(s)	610
BstSFI	CTRYAG	2 cut(s)	378, 727
BstV1I	GCAGC	2 cut(s)	373, 467
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	857
BsuRI	GGCC	2 cut(s)	216, 751
BtsCI	GGATG	1 cut(s)	879
BtsIMutI	CAGTG	2 cut(s)	668, 736
Cac8I	GCNNGC	2 cut(s)	676, 680
CaiI	CAGNNNCTG	3 cut(s)	153, 386, 448
Cfr13I	GGNCC	2 cut(s)	214, 749
CseI	GACGC	1 cut(s)	710
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	9 cut(s)	30, 44, 64, 188, 354, 565, 753, 773, 837
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	762
Eam1104I	CTCTTC	3 cut(s)	26, 186, 872
EarI	CTCTTC	3 cut(s)	26, 186, 872
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	19
EcoO65I	GGTNACC	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	526
FaeI	CATG	9 cut(s)	33, 47, 67, 191, 357, 568, 756, 776, 840
FaqI	GGGAC	1 cut(s)	855
FatI	CATG	9 cut(s)	29, 43, 63, 187, 353, 564, 752, 772, 836
Fnu4HI	GCNGC	2 cut(s)	387, 481
FokI	GGATG	1 cut(s)	886
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	387, 481
FspBI	CTAG	1 cut(s)	845
GluI	GCNGC	2 cut(s)	387, 481
GsuI	CTGGAG	2 cut(s)	318, 331
HaeIII	GGCC	2 cut(s)	216, 751
HgaI	GACGC	1 cut(s)	710
Hin1I	GRCGYC	1 cut(s)	702
Hin1II	CATG	9 cut(s)	33, 47, 67, 191, 357, 568, 756, 776, 840
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	6 cut(s)	26, 227, 245, 587, 599, 903
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	2 cut(s)	145, 307
Hpy188I	TCNGA	5 cut(s)	253, 439, 592, 604, 709
Hpy188III	TCNNGA	3 cut(s)	199, 340, 629
Hpy8I	GTNNAC	2 cut(s)	145, 307
HpyAV	CCTTC	6 cut(s)	231, 251, 389, 566, 853, 893
HpyCH4III	ACNGT	3 cut(s)	272, 382, 731
HpyCH4V	TGCA	1 cut(s)	483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	486, 701
HpyF3I	CTNAG	1 cut(s)	762
Hsp92I	GRCGYC	1 cut(s)	702
Hsp92II	CATG	9 cut(s)	33, 47, 67, 191, 357, 568, 756, 776, 840
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	81, 323
Lsp1109I	GCAGC	2 cut(s)	373, 467
MaeI	CTAG	1 cut(s)	845
MaeIII	GTNAC	7 cut(s)	266, 328, 412, 458, 610, 647, 778
MboII	GAAGA	6 cut(s)	13, 203, 266, 560, 841, 889
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	463, 512, 920
MlyI	GAGTC	2 cut(s)	35, 239
MmeI	TCCRAC	1 cut(s)	792
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	3 cut(s)	117, 824, 872
MwoI	GCNNNNNNNGC	2 cut(s)	486, 701
NlaIII	CATG	9 cut(s)	33, 47, 67, 191, 357, 568, 756, 776, 840
NmuCI	GTSAC	4 cut(s)	412, 458, 610, 647
PciSI	GCTCTTC	1 cut(s)	26
PfeI	GAWTC	4 cut(s)	227, 587, 599, 903
PflFI	GACNNNGTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	2 cut(s)	388, 482
PleI	GAGTC	2 cut(s)	34, 239
PpsI	GAGTC	2 cut(s)	34, 239
PshBI	ATTAAT	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	21
PspEI	GGTNACC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	214, 749
PstNI	CAGNNNCTG	3 cut(s)	153, 386, 448
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	3 cut(s)	117, 824, 872
SacI	GAGCTC	1 cut(s)	21
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	387, 481
Sau96I	GGNCC	2 cut(s)	214, 749
ScaI	AGTACT	1 cut(s)	209
SchI	GAGTC	2 cut(s)	35, 239
SduI	GDGCHC	1 cut(s)	21
SfcI	CTRYAG	2 cut(s)	378, 727
SmiMI	CAYNNNNRTG	3 cut(s)	117, 824, 872
SmlI	CTYRAG	2 cut(s)	181, 662
SmoI	CTYRAG	2 cut(s)	181, 662
Sse9I	AATT	3 cut(s)	463, 512, 920
SsiI	CCGC	2 cut(s)	489, 909
SspMI	CTAG	1 cut(s)	845
SstI	GAGCTC	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	3 cut(s)	272, 382, 731
TaqI	TCGA	4 cut(s)	24, 38, 279, 640
TasI	AATT	3 cut(s)	463, 512, 920
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	4 cut(s)	227, 587, 599, 903
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	675, 736
TseFI	GTSAC	4 cut(s)	412, 458, 610, 647
TseI	GCWGC	2 cut(s)	386, 480
Tsp45I	GTSAC	4 cut(s)	412, 458, 610, 647
TspDTI	ATGAA	6 cut(s)	135, 204, 342, 456, 890, 918
TspRI	CASTG	2 cut(s)	675, 736
Tth111I	GACNNNGTC	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	64
VspI	ATTAAT	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	2 cut(s)	353, 728
XspI	CTAG	1 cut(s)	845
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.