Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Forward (+)

43313336 .. 43314740

Gene Structure 1405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTTTCTCTTCATTTTCCAAAGTGTCCCTTCTGCTCTTCATTGTGCCTTTCTTTTTAGGCACTTATTGTCTGGCTCATGATTTTTCAATTGTGGGTTACTCACCCGAGCACTTGTCTTCCATGGACAAGTTCATTGAGCTCTTCGAGTCATGGATATCGAAACATGGCAAGATTTACCACAACATGGAGGAGAAGCTCCATAAGTTTGAGATATTCAAAGACAATGTCAAGCATATTAATGAAAGGAATAAGAAGCTTGATGTTGACAGCTACTGGCTTGGATTGAATGAGTTTGCTGACTTGAGCCATGAAGAGTTCAAGAGCAAGTACTTGGGCCTAAAAGGGGAATCCCCAAGAAGGAGAGACTCCTCTGAAGAAGGGTTCAGTTACCGTGATTTCGACCAAGAGGCATTGCCCAAGTCTGTGGACTGGAGAAATAAAGGAGCTGTTACTCCAGTCAAGAACCAAGGTTCATGTGGTAGCTGTTGGGCATTTTCTACAGTTGCTGCTGTTGAAGGCATAAACCAGATAGTCACAGGAAACCTAATATCGCTGTCCGAACAGCAACTGATAGATTGTGACAATTCATTCAACGATGGCTGCAATGGCGGTTTGATGGACTACGCTTTTCAATTTATCATCTCTAATGGTGGGCTTCACAAGGAGGAAGAATACCCCTATATCATGGACGAAGGAACTTGTGAGGAATCAGAGGGACAATCAGAGGTGGTGACCATATCTGGTTATCAAGATGTGCCTCGAAATAGTGACCAAGCTCTCCTCAAGGCACTGGCTCGCCAGCCCATTAGTGTTGCTATTGACGCCTCTGACAGAGATTTCCAGTTCTACAGTGGGGGTGTGTTCAACGGGCCATGTGGAACTCAGCTAACTCATGGTGTAACAGCTGTTGGCTATGGAACATCAGAGGGGTTGGATTACATCATTGTGAAGAACTCATGGGGACTAAAGTGGGGAGAGAAGGGATACATAAGGATGAAGAGAAACACAGGAAAGCCAGAAGGAATCTGCGGTATCAACAAATTGGCTTCATATCCCACCAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

357

Amino Acids

40.03

Weight (kDa)

5.47

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	49 - 107	2.1e-18	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	139 - 354	2.7e-83	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	187
AciI	CCGC	2 cut(s)	612, 1032
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	825
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	3 cut(s)	187, 346, 360
AgsI	TTSAA	8 cut(s)	90, 220, 289, 322, 518, 595, 635, 868
AluBI	AGCT	9 cut(s)	142, 199, 259, 273, 449, 486, 779, 889, 908
AluI	AGCT	9 cut(s)	142, 199, 259, 273, 449, 486, 779, 889, 908
Alw21I	GWGCWC	2 cut(s)	114, 144
Alw26I	GTCTC	1 cut(s)	360
AlwNI	CAGNNNCTG	3 cut(s)	276, 509, 571
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	337, 872
ApeKI	GCWGC	2 cut(s)	509, 603
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
AseI	ATTAAT	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	337, 872
AsuHPI	GGTGA	2 cut(s)	96, 745
AvaI	CYCGRG	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	114, 144
BbvI	GCAGC	2 cut(s)	496, 590
BccI	CCATC	2 cut(s)	593, 613
BciVI	GTATCC	1 cut(s)	980
BcoDI	GTCTC	1 cut(s)	360
BfmI	CTRYAG	2 cut(s)	501, 850
BfuI	GTATCC	1 cut(s)	980
BisI	GCNGC	2 cut(s)	510, 604
BlsI	GCNGC	2 cut(s)	511, 605
BmcAI	AGTACT	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	337, 872
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	2 cut(s)	441, 454
BpuEI	CTTGAG	2 cut(s)	325, 770
BsaHI	GRCGYC	1 cut(s)	825
BsaJI	CCNNGG	2 cut(s)	123, 469
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 346, 360
Bse1I	ACTGG	5 cut(s)	281, 437, 458, 798, 844
Bse3DI	GCAATG	2 cut(s)	413, 613
BseDI	CCNNGG	2 cut(s)	123, 469
BseGI	GGATG	1 cut(s)	1002
BseLI	CCNNNNNNNGG	3 cut(s)	187, 346, 360
BseMI	GCAATG	2 cut(s)	413, 613
BseMII	CTCAG	1 cut(s)	899
BseNI	ACTGG	5 cut(s)	281, 437, 458, 798, 844
BseRI	GAGGAG	3 cut(s)	206, 361, 773
BseXI	GCAGC	2 cut(s)	496, 590
BshFI	GGCC	2 cut(s)	339, 874
BsiHKAI	GWGCWC	2 cut(s)	114, 144
BsiHKCI	CYCGRG	1 cut(s)	107
BslFI	GGGAC	3 cut(s)	13, 732, 978
BslI	CCNNNNNNNGG	3 cut(s)	187, 346, 360
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	3 cut(s)	13, 732, 978
BsnI	GGCC	2 cut(s)	339, 874
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	114, 144
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	2 cut(s)	612, 1032
BspANI	GGCC	2 cut(s)	339, 874
BspCNI	CTCAG	1 cut(s)	898
BspHI	TCATGA	1 cut(s)	79
BspQI	GCTCTTC	2 cut(s)	44, 149
BsrDI	GCAATG	2 cut(s)	413, 613
BsrI	ACTGG	5 cut(s)	281, 437, 458, 798, 844
BssECI	CCNNGG	2 cut(s)	123, 469
BssNI	GRCGYC	1 cut(s)	825
BssT1I	CCWWGG	2 cut(s)	123, 469
Bst4CI	ACNGT	3 cut(s)	395, 505, 854
Bst6I	CTCTTC	5 cut(s)	16, 44, 149, 309, 995
BstACI	GRCGYC	1 cut(s)	825
BstC8I	GCNNGC	2 cut(s)	799, 803
BstDEI	CTNAG	1 cut(s)	885
BstDSI	CCRYGG	1 cut(s)	123
BstEII	GGTNACC	1 cut(s)	733
BstF5I	GGATG	1 cut(s)	1002
BstMAI	GTCTC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	2 cut(s)	609, 824
BstPI	GGTNACC	1 cut(s)	733
BstSFI	CTRYAG	2 cut(s)	501, 850
BstV1I	GCAGC	2 cut(s)	496, 590
BstV2I	GAAGAC	1 cut(s)	111
BstXI	CCANNNNNNTGG	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	980
BsuRI	GGCC	2 cut(s)	339, 874
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	1002
BtsIMutI	CAGTG	2 cut(s)	791, 859
Cac8I	GCNNGC	2 cut(s)	799, 803
CaiI	CAGNNNCTG	3 cut(s)	276, 509, 571
CciI	TCATGA	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	337, 872
CseI	GACGC	1 cut(s)	833
Csp6I	GTAC	1 cut(s)	331
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	885
Eam1104I	CTCTTC	5 cut(s)	16, 44, 149, 309, 995
EarI	CTCTTC	5 cut(s)	16, 44, 149, 309, 995
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	123, 469
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	733
EcoICRI	GAGCTC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	733
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	123, 469
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	123, 469
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	3 cut(s)	13, 732, 978
Fnu4HI	GCNGC	2 cut(s)	510, 604
FokI	GGATG	1 cut(s)	1009
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	510, 604
GluI	GCNGC	2 cut(s)	510, 604
GsuI	CTGGAG	2 cut(s)	441, 454
HaeIII	GGCC	2 cut(s)	339, 874
HgaI	GACGC	1 cut(s)	833
Hin1I	GRCGYC	1 cut(s)	825
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	5 cut(s)	149, 350, 368, 710, 1026
HphI	GGTGA	2 cut(s)	96, 745
Hpy166II	GTNNAC	2 cut(s)	268, 430
Hpy188I	TCNGA	6 cut(s)	376, 562, 715, 727, 832, 928
Hpy188III	TCNNGA	4 cut(s)	80, 322, 463, 752
Hpy8I	GTNNAC	2 cut(s)	268, 430
HpyAV	CCTTC	7 cut(s)	41, 354, 374, 512, 689, 976, 1016
HpyCH4III	ACNGT	3 cut(s)	395, 505, 854
HpyCH4V	TGCA	1 cut(s)	606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	609, 824
HpyF3I	CTNAG	1 cut(s)	885
Hsp92I	GRCGYC	1 cut(s)	825
LguI	GCTCTTC	2 cut(s)	44, 149
LmnI	GCTCC	2 cut(s)	204, 446
Lsp1109I	GCAGC	2 cut(s)	496, 590
MaeIII	GTNAC	8 cut(s)	98, 389, 451, 535, 581, 733, 770, 901
MboII	GAAGA	9 cut(s)	3, 31, 111, 136, 326, 389, 683, 964, 1012
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	114, 144
MluCI	AATT	4 cut(s)	90, 586, 635, 1043
MlyI	GAGTC	2 cut(s)	158, 362
MmeI	TCCRAC	1 cut(s)	915
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	3 cut(s)	240, 947, 995
MspA1I	CMGCKG	1 cut(s)	908
MunI	CAATTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	609, 824
NcoI	CCATGG	1 cut(s)	123
NmuCI	GTSAC	4 cut(s)	535, 581, 733, 770
PagI	TCATGA	1 cut(s)	79
PciSI	GCTCTTC	2 cut(s)	44, 149
PfeI	GAWTC	3 cut(s)	350, 710, 1026
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	511, 605
PleI	GAGTC	2 cut(s)	157, 362
PpsI	GAGTC	2 cut(s)	157, 362
PshBI	ATTAAT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	733
PspPI	GGNCC	2 cut(s)	337, 872
PstNI	CAGNNNCTG	3 cut(s)	276, 509, 571
PsyI	GACNNNGTC	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	3 cut(s)	240, 947, 995
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	2 cut(s)	44, 149
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	510, 604
Sau96I	GGNCC	2 cut(s)	337, 872
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	2 cut(s)	158, 362
SduI	GDGCHC	2 cut(s)	114, 144
SfcI	CTRYAG	2 cut(s)	501, 850
SmiMI	CAYNNNNRTG	3 cut(s)	240, 947, 995
SmlI	CTYRAG	2 cut(s)	304, 785
SmoI	CTYRAG	2 cut(s)	304, 785
Sse9I	AATT	4 cut(s)	90, 586, 635, 1043
SsiI	CCGC	2 cut(s)	612, 1032
SstI	GAGCTC	1 cut(s)	144
StyI	CCWWGG	2 cut(s)	123, 469
TaaI	ACNGT	3 cut(s)	395, 505, 854
TaqI	TCGA	4 cut(s)	147, 161, 402, 763
TasI	AATT	4 cut(s)	90, 586, 635, 1043
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	350, 710, 1026
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	798, 859
TseFI	GTSAC	4 cut(s)	535, 581, 733, 770
TseI	GCWGC	2 cut(s)	509, 603
Tsp45I	GTSAC	4 cut(s)	535, 581, 733, 770
TspDTI	ATGAA	8 cut(s)	31, 124, 258, 327, 465, 579, 1013, 1041
TspRI	CASTG	2 cut(s)	798, 859
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	187
VspI	ATTAAT	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	2 cut(s)	476, 851
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.