Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Forward (+)

17156348 .. 17157722

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCTTTTTCGAAGATTTTGCTTCTTGCCTTCCTTGTGCCTCTCTTTCTCGGTTCTGCTCTTGCTCACGAGTTCTCGATCGTGGGATATTCTCCCGAGGACCTGACCTGCATGGACAAGTTCATCATGCTCTTTGAAAAGTGGATATCGAAGCACGGAAAGATTTATGAGAGCATGGAGGAGAAGCTGCATAGGTTTGAGATTTTCAGAGATAACGTGAAGCACATTGATGAGAGGAATAAGAAACTCGATGTTGATAGCTACTGGCTTGCTGTGAATGAGTTTGCTGACTTGAGCCATGAGGAGTTCAAGAGCAAGTACTTGGGTCTCAAGGCTGAGTTCCCCAGAAGGATAGAGTCCACTGGAGATTTCAGTTACCACAATTTTGATGTAGTGGCATTGCCCCAATCTGTGGACTGGCGAAAGAAAGGAGCAGTAACCTCCATCAAGAACCAAGGTTCATGTGGTAGCTGTTGGGCATTTTCCACTGTTGCTGCAGTTGAGGGCATAAACCAGATAGTCACAGGAAGACTAACATCTCTGTCTGAGCAGCAGCTGATAGATTGTGACAAATCATTCAACAATGGCTGCAGTGGAGGCTTGATGGATTATGCATTCGAGTTCATAATCTCCAACGGTGGCCTCCACAAGGAGGATGATTACCCCTACATTATGGATGAAGGAACTTGTGCGGAAAAGAAGGCAGACTCGGACCTAGTGACTATCTCTGGTTACCATGACGTGCCAGAAAACAACGAGCAGGCTCTCCTCAAGGCACTCGCAAACCAGCCTCTCAGCGTAGCCATTGAGGCCTCCAGCAGAGATTTCCAGTTCTATAGCGGGGGTGTCTTCAACGGGCGTTGTGGAACTGAACTAGACCACGGTGTAGCAGCCGTCGGATATGGAACTCAGAATGGGTTAGATTACATCATTGTGAAGAACTCATGGGGGCCAAAGTGGGGAGAAAAGGGATACATAAGGATGAAGAGGAGCACAGGGAAACCAGAAGGAATCTGTGGCATTAACAAGATGGCTTCATATCCTACCAAAAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

353

Amino Acids

39.37

Weight (kDa)

5.66

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	45 - 103	6.8e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	134 - 349	8e-84	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	412
AciI	CCGC	2 cut(s)	692, 840
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	4 cut(s)	412, 649, 652, 959
AgsI	TTSAA	4 cut(s)	137, 310, 580, 853
AjiI	CACGTC	1 cut(s)	742
AluBI	AGCT	4 cut(s)	187, 261, 471, 556
AluI	AGCT	4 cut(s)	187, 261, 471, 556
Alw21I	GWGCWC	1 cut(s)	995
Alw26I	GTCTC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	556
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	3 cut(s)	640, 810, 950
ApeKI	GCWGC	6 cut(s)	187, 494, 550, 553, 588, 890
AspS9I	GGNCC	3 cut(s)	100, 712, 950
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	100, 712
BauI	CACGAG	1 cut(s)	68
BbsI	GAAGAC	2 cut(s)	535, 841
Bbv12I	GWGCWC	1 cut(s)	995
BbvI	GCAGC	6 cut(s)	174, 481, 562, 565, 575, 902
BccI	CCATC	3 cut(s)	452, 598, 1024
BceAI	ACGGC	1 cut(s)	878
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	965
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	2 cut(s)	716, 875
BfmI	CTRYAG	3 cut(s)	495, 589, 835
BfuAI	ACCTGC	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	965
BglI	GCCNNNNNGGC	1 cut(s)	809
BisI	GCNGC	6 cut(s)	188, 495, 551, 554, 589, 891
BlsI	GCNGC	6 cut(s)	189, 496, 552, 555, 590, 892
BmcAI	AGTACT	1 cut(s)	320
Bme18I	GGWCC	2 cut(s)	100, 712
BmeT110I	CYCGRG	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	742
BmgT120I	GGNCC	3 cut(s)	100, 712, 950
BmiI	GGNNCC	1 cut(s)	951
BpiI	GAAGAC	2 cut(s)	535, 841
BpmI	CTGGAG	2 cut(s)	384, 799
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	3 cut(s)	313, 314, 755
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	96, 454, 880
Bsc4I	CCNNNNNNNGG	4 cut(s)	412, 649, 652, 959
Bse1I	ACTGG	4 cut(s)	269, 367, 422, 829
Bse3DI	GCAATG	1 cut(s)	398
BseDI	CCNNGG	3 cut(s)	96, 454, 880
BseGI	GGATG	3 cut(s)	661, 682, 987
BseLI	CCNNNNNNNGG	4 cut(s)	412, 649, 652, 959
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	4 cut(s)	327, 537, 808, 923
BseNI	ACTGG	4 cut(s)	269, 367, 422, 829
BseRI	GAGGAG	4 cut(s)	194, 317, 758, 1003
BseXI	GCAGC	6 cut(s)	174, 481, 562, 565, 575, 902
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	642, 812, 952
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	995
BsiHKCI	CYCGRG	1 cut(s)	95
BslI	CCNNNNNNNGG	4 cut(s)	412, 649, 652, 959
BsmAI	GTCTC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	3 cut(s)	642, 812, 952
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	995
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	692, 840
BspANI	GGCC	3 cut(s)	642, 812, 952
BspCNI	CTCAG	4 cut(s)	328, 538, 807, 922
BspLI	GGNNCC	1 cut(s)	951
BspMAI	CTGCAG	2 cut(s)	499, 593
BspMI	ACCTGC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	4 cut(s)	269, 367, 422, 829
BssECI	CCNNGG	3 cut(s)	96, 454, 880
BssMI	GATC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	490, 638, 884
Bst6I	CTCTTC	1 cut(s)	980
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	270, 762
BstDEI	CTNAG	4 cut(s)	336, 546, 794, 909
BstDSI	CCRYGG	1 cut(s)	880
BstEII	GGTNACC	1 cut(s)	731
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstF5I	GGATG	3 cut(s)	661, 682, 987
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	597, 809
BstPI	GGTNACC	1 cut(s)	731
BstSFI	CTRYAG	3 cut(s)	495, 589, 835
BstV1I	GCAGC	6 cut(s)	174, 481, 562, 565, 575, 902
BstV2I	GAAGAC	2 cut(s)	535, 841
BsuI	GTATCC	1 cut(s)	965
BsuRI	GGCC	3 cut(s)	642, 812, 952
BtgI	CCRYGG	1 cut(s)	880
BtrI	CACGTC	1 cut(s)	742
BtsCI	GGATG	3 cut(s)	661, 682, 987
BtsI	GCAGTG	1 cut(s)	598
BtsIMutI	CAGTG	3 cut(s)	360, 486, 598
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	270, 762
CaiI	CAGNNNCTG	1 cut(s)	556
Cfr13I	GGNCC	3 cut(s)	100, 712, 950
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	7 cut(s)	112, 127, 175, 299, 462, 737, 945
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	4 cut(s)	336, 546, 794, 909
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	980
EarI	CTCTTC	1 cut(s)	980
Eco130I	CCWWGG	1 cut(s)	454
Eco147I	AGGCCT	1 cut(s)	812
Eco31I	GGTCTC	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	147
Eco47I	GGWCC	2 cut(s)	100, 712
Eco88I	CYCGRG	1 cut(s)	95
Eco91I	GGTNACC	1 cut(s)	731
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	731
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	454
EcoT22I	ATGCAT	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	7 cut(s)	115, 130, 178, 302, 465, 740, 948
FatI	CATG	7 cut(s)	111, 126, 174, 298, 461, 736, 944
FauI	CCCGC	1 cut(s)	833
Fnu4HI	GCNGC	6 cut(s)	188, 495, 551, 554, 589, 891
FokI	GGATG	3 cut(s)	668, 689, 994
Fsp4HI	GCNGC	6 cut(s)	188, 495, 551, 554, 589, 891
FspBI	CTAG	2 cut(s)	716, 875
GluI	GCNGC	6 cut(s)	188, 495, 551, 554, 589, 891
GsuI	CTGGAG	2 cut(s)	384, 799
HaeIII	GGCC	3 cut(s)	642, 812, 952
Hin1II	CATG	7 cut(s)	115, 130, 178, 302, 465, 740, 948
HinfI	GANTC	3 cut(s)	356, 707, 1011
Hpy166II	GTNNAC	2 cut(s)	360, 415
Hpy188I	TCNGA	5 cut(s)	209, 547, 712, 899, 912
Hpy188III	TCNNGA	5 cut(s)	68, 76, 95, 310, 448
Hpy8I	GTNNAC	2 cut(s)	360, 415
Hpy99I	CGWCG	1 cut(s)	899
HpyAV	CCTTC	5 cut(s)	40, 342, 674, 694, 1001
HpyCH4III	ACNGT	3 cut(s)	490, 638, 884
HpyCH4IV	ACGT	2 cut(s)	216, 741
HpyCH4V	TGCA	5 cut(s)	111, 190, 497, 591, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	597, 809
HpyF3I	CTNAG	4 cut(s)	336, 546, 794, 909
HpySE526I	ACGT	2 cut(s)	216, 741
Hsp92II	CATG	7 cut(s)	115, 130, 178, 302, 465, 740, 948
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	431, 990
Lsp1109I	GCAGC	6 cut(s)	174, 481, 562, 565, 575, 902
MaeI	CTAG	2 cut(s)	716, 875
MaeII	ACGT	2 cut(s)	216, 741
MaeIII	GTNAC	6 cut(s)	374, 436, 520, 566, 718, 731
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	5 cut(s)	25, 540, 841, 949, 997
MhlI	GDGCHC	1 cut(s)	995
MluCI	AATT	2 cut(s)	382, 1054
MlyI	GAGTC	2 cut(s)	365, 701
MmeI	TCCRAC	2 cut(s)	657, 877
Mph1103I	ATGCAT	1 cut(s)	616
MseI	TTAA	1 cut(s)	1023
MslI	CAYNNNNRTG	3 cut(s)	228, 932, 980
MspA1I	CMGCKG	1 cut(s)	556
Mva1269I	GAATGC	1 cut(s)	614
MwoI	GCNNNNNNNGC	2 cut(s)	597, 809
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	7 cut(s)	115, 130, 178, 302, 465, 740, 948
NlaIV	GGNNCC	1 cut(s)	951
NmuCI	GTSAC	3 cut(s)	520, 566, 718
NsiI	ATGCAT	1 cut(s)	616
NspV	TTCGAA	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	812
PctI	GAATGC	1 cut(s)	614
PfeI	GAWTC	1 cut(s)	1011
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	6 cut(s)	189, 496, 552, 555, 590, 892
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	2 cut(s)	364, 701
PpsI	GAGTC	2 cut(s)	364, 701
PpuMI	RGGWCCY	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	100
PspEI	GGTNACC	1 cut(s)	731
PspN4I	GGNNCC	1 cut(s)	951
PspPI	GGNCC	3 cut(s)	100, 712, 950
PspPPI	RGGWCCY	1 cut(s)	100
PstI	CTGCAG	2 cut(s)	499, 593
PstNI	CAGNNNCTG	1 cut(s)	556
PvuI	CGATCG	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	3 cut(s)	228, 932, 980
SaqAI	TTAA	1 cut(s)	1023
SatI	GCNGC	6 cut(s)	188, 495, 551, 554, 589, 891
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	3 cut(s)	100, 712, 950
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	2 cut(s)	365, 701
SduI	GDGCHC	1 cut(s)	995
SfcI	CTRYAG	3 cut(s)	495, 589, 835
SfuI	TTCGAA	1 cut(s)	11
SinI	GGWCC	2 cut(s)	100, 712
SmiMI	CAYNNNNRTG	3 cut(s)	228, 932, 980
SmlI	CTYRAG	3 cut(s)	292, 329, 770
SmoI	CTYRAG	3 cut(s)	292, 329, 770
Sse9I	AATT	2 cut(s)	382, 1054
SseBI	AGGCCT	1 cut(s)	812
SsiI	CCGC	2 cut(s)	692, 840
SspMI	CTAG	2 cut(s)	716, 875
StuI	AGGCCT	1 cut(s)	812
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	3 cut(s)	490, 638, 884
TaiI	ACGT	2 cut(s)	219, 744
TaqI	TCGA	5 cut(s)	11, 77, 149, 249, 618
TasI	AATT	2 cut(s)	382, 1054
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	1011
Tru1I	TTAA	1 cut(s)	1023
Tru9I	TTAA	1 cut(s)	1023
TscAI	CASTG	3 cut(s)	367, 493, 598
TseFI	GTSAC	3 cut(s)	520, 566, 718
TseI	GCWGC	6 cut(s)	187, 494, 550, 553, 588, 890
Tsp45I	GTSAC	3 cut(s)	520, 566, 718
TspDTI	ATGAA	6 cut(s)	112, 450, 613, 693, 998, 1026
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	3 cut(s)	367, 493, 598
Van91I	CCANNNNNTGG	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	100, 712
XagI	CCTNNNNNAGG	1 cut(s)	647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XspI	CTAG	2 cut(s)	716, 875
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.