Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Forward (+)

22859758 .. 22861223

Gene Structure 1466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1142500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCATTTTCGAAGATTTCCCTTCTTTCCTTCCTTGTACCTCTCTTTCTCGGTTCTGCTCTGGCTCACGAGTTCTCGATCGTGGGATATTCTCCCGAGGACTTGACCTGCATGGACAAGTTCATCATGCTTTTCGAGAAGTGGATATCGAAGCATGGCAAGATTTATGAGAGCATGGAGGAGAAGCTGCATAGGTTTGAGATTTTCAGAGACAACGTGAAGCACATTGATGAGAGGAATAAAACCTCGATGTCGATAGCTACTGGCTTGGTTCTACTGGAGATTTCAGTTACCGCGATTTTTGATGTAGAGGCATTGCCCAAATCCGTGGACTGGCGAAAGAAAGGAGCTGTAACCTCCATCAAGAACCAAGGTTCATGTGGTAGCTGTTGGGCATTTTCCACTGTTGCTGCAGTTGAGGGCATAAACCAGATAGTCACAGGAAACCTAACATCCCTGTCTGAGCAGCAGCTGATAGATTGCGACAAAGCATTCAACAATGGCTGCAACGGAGGCTTGATGGATTATGCATTTGAGTTCATAATCTCCAACGGTGGGCTCCACAAGGAGGATGATTACCCCTACATTATGGAGGAAGGAACTTGTGAGGGAAAGAAGGCGGAGTCAAACGTAGTGACTATCACCGGGTACCAAGATGTGCCTGAAAACAACGAGCAAGCTCTCCTCAAGGCACTGGCAAACCAGCCTCTCAGCGTGGCTATTGAGGCCTCTGGCAGAGATTTCCAGTTCTATAGCGGGGGGGTTTTCAACGGGCGTTGTGGAACCGAGCTAGATCACGGTGTAGCAGCGGTCGGGTATGGAACTCAGAAGGGGTTAGATTACATCATTGTGAAGAACTCATGGGGGCCAAAGTGGGGAGAAAAGGGATACATAATAAGGATGAAGAGGAACACGGGGAAACCAGAAGGAATCTGTGGTATTAACAAGATGGCTTCATATCCTACCAAAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

326

Amino Acids

35.87

Weight (kDa)

5.94

Isoelectric Point (pI)

25.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	45 - 83	2.6e-11	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	106 - 322	4.8e-83	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
Acc65I	GGTACC	1 cut(s)	648
AccB1I	GGYRCC	1 cut(s)	648
AccII	CGCG	1 cut(s)	296
AciI	CCGC	4 cut(s)	294, 620, 756, 809
AfaI	GTAC	2 cut(s)	39, 650
AfiI	CCNNNNNNNGG	4 cut(s)	333, 555, 568, 875
AgsI	TTSAA	2 cut(s)	496, 769
AluBI	AGCT	7 cut(s)	187, 260, 350, 387, 472, 680, 790
AluI	AGCT	7 cut(s)	187, 260, 350, 387, 472, 680, 790
Alw26I	GTCTC	1 cut(s)	204
AlwNI	CAGNNNCTG	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	726, 866
ApeKI	GCWGC	6 cut(s)	187, 410, 466, 469, 504, 806
Asp718I	GGTACC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	866
AsuC2I	CCSGG	1 cut(s)	646
AsuHPI	GGTGA	1 cut(s)	634
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	648
BanII	GRGCYC	1 cut(s)	561
BauI	CACGAG	1 cut(s)	68
BbvI	GCAGC	6 cut(s)	174, 397, 478, 481, 491, 818
BccI	CCATC	3 cut(s)	368, 514, 943
BciVI	GTATCC	1 cut(s)	881
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	2 cut(s)	411, 751
BfuAI	ACCTGC	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	881
BisI	GCNGC	6 cut(s)	188, 411, 467, 470, 505, 807
BlsI	GCNGC	6 cut(s)	189, 412, 468, 471, 506, 808
Bme1390I	CCNGG	1 cut(s)	646
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	866
BmiI	GGNNCC	4 cut(s)	560, 650, 784, 867
BmrFI	CCNGG	1 cut(s)	646
BpmI	CTGGAG	1 cut(s)	299
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	646
BsaJI	CCNNGG	3 cut(s)	96, 327, 370
Bsc4I	CCNNNNNNNGG	4 cut(s)	333, 555, 568, 875
Bse1I	ACTGG	5 cut(s)	268, 282, 338, 699, 745
Bse3DI	GCAATG	1 cut(s)	314
BseDI	CCNNGG	3 cut(s)	96, 327, 370
BseGI	GGATG	3 cut(s)	452, 577, 906
BseLI	CCNNNNNNNGG	4 cut(s)	333, 555, 568, 875
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	3 cut(s)	453, 724, 839
BseNI	ACTGG	5 cut(s)	268, 282, 338, 699, 745
BseRI	GAGGAG	2 cut(s)	194, 674
BseXI	GCAGC	6 cut(s)	174, 397, 478, 481, 491, 818
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	2 cut(s)	81, 813
BshFI	GGCC	2 cut(s)	728, 868
BshNI	GGYRCC	1 cut(s)	648
BsiEI	CGRYCG	2 cut(s)	81, 813
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	645
BslI	CCNNNNNNNGG	4 cut(s)	333, 555, 568, 875
BsmAI	GTCTC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	728, 868
BsoBI	CYCGRG	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	78, 793
BspACI	CCGC	4 cut(s)	294, 620, 756, 809
BspANI	GGCC	2 cut(s)	728, 868
BspCNI	CTCAG	3 cut(s)	454, 723, 838
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	4 cut(s)	560, 650, 784, 867
BspMAI	CTGCAG	1 cut(s)	415
BspMI	ACCTGC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	648
BsrDI	GCAATG	1 cut(s)	314
BsrI	ACTGG	5 cut(s)	268, 282, 338, 699, 745
BssECI	CCNNGG	3 cut(s)	96, 327, 370
BssMI	GATC	2 cut(s)	78, 793
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	406, 554, 800
Bst6I	CTCTTC	1 cut(s)	899
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	678
BstDEI	CTNAG	3 cut(s)	462, 710, 825
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	452, 577, 906
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	2 cut(s)	81, 796
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	2 cut(s)	78, 793
BstMCI	CGRYCG	2 cut(s)	81, 813
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 725
BstSCI	CCNGG	1 cut(s)	644
BstSFI	CTRYAG	2 cut(s)	411, 751
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	6 cut(s)	174, 397, 478, 481, 491, 818
BstXI	CCANNNNNNTGG	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	881
BsuRI	GGCC	2 cut(s)	728, 868
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	3 cut(s)	452, 577, 906
BtsIMutI	CAGTG	2 cut(s)	402, 692
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	678
CaiI	CAGNNNCTG	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	866
Csp6I	GTAC	2 cut(s)	38, 649
CviAII	CATG	6 cut(s)	112, 127, 155, 175, 378, 861
CviQI	GTAC	2 cut(s)	38, 649
DdeI	CTNAG	3 cut(s)	462, 710, 825
DpnI	GATC	2 cut(s)	80, 795
DpnII	GATC	2 cut(s)	78, 793
Eam1104I	CTCTTC	1 cut(s)	899
EarI	CTCTTC	1 cut(s)	899
EciI	GGCGGA	1 cut(s)	635
Eco130I	CCWWGG	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	728
Eco24I	GRGCYC	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	6 cut(s)	115, 130, 158, 178, 381, 864
FatI	CATG	6 cut(s)	111, 126, 154, 174, 377, 860
FauI	CCCGC	1 cut(s)	749
Fnu4HI	GCNGC	6 cut(s)	188, 411, 467, 470, 505, 807
FokI	GGATG	3 cut(s)	439, 584, 913
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	6 cut(s)	188, 411, 467, 470, 505, 807
FspBI	CTAG	1 cut(s)	791
GluI	GCNGC	6 cut(s)	188, 411, 467, 470, 505, 807
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	728, 868
HapII	CCGG	1 cut(s)	645
Hin1II	CATG	6 cut(s)	115, 130, 158, 178, 381, 864
HinfI	GANTC	2 cut(s)	623, 930
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	3 cut(s)	209, 463, 828
Hpy188III	TCNNGA	5 cut(s)	68, 76, 95, 136, 364
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	6 cut(s)	32, 40, 590, 610, 823, 920
HpyCH4III	ACNGT	3 cut(s)	406, 554, 800
HpyCH4IV	ACGT	2 cut(s)	216, 630
HpyCH4V	TGCA	5 cut(s)	111, 190, 413, 507, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 725
HpyF3I	CTNAG	3 cut(s)	462, 710, 825
HpySE526I	ACGT	2 cut(s)	216, 630
Hsp92II	CATG	6 cut(s)	115, 130, 158, 178, 381, 864
KpnI	GGTACC	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	78, 793
LmnI	GCTCC	2 cut(s)	347, 564
Lsp1109I	GCAGC	6 cut(s)	174, 397, 478, 481, 491, 818
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	2 cut(s)	216, 630
MaeIII	GTNAC	4 cut(s)	289, 352, 436, 634
MalI	GATC	2 cut(s)	80, 795
MboI	GATC	2 cut(s)	78, 793
MboII	GAAGA	3 cut(s)	25, 865, 916
MhlI	GDGCHC	1 cut(s)	561
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	1 cut(s)	942
MslI	CAYNNNNRTG	2 cut(s)	228, 848
MspA1I	CMGCKG	2 cut(s)	472, 809
MspI	CCGG	1 cut(s)	645
MspR9I	CCNGG	1 cut(s)	646
Mva1269I	GAATGC	1 cut(s)	491
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	513, 725
NciI	CCSGG	1 cut(s)	646
NdeII	GATC	2 cut(s)	78, 793
NlaIII	CATG	6 cut(s)	115, 130, 158, 178, 381, 864
NlaIV	GGNNCC	4 cut(s)	560, 650, 784, 867
NmuCI	GTSAC	2 cut(s)	436, 634
NsiI	ATGCAT	1 cut(s)	532
NspV	TTCGAA	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	728
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	930
PkrI	GCNGC	6 cut(s)	189, 412, 468, 471, 506, 808
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PspN4I	GGNNCC	4 cut(s)	560, 650, 784, 867
PspPI	GGNCC	1 cut(s)	866
PstI	CTGCAG	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	472
PvuI	CGATCG	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	2 cut(s)	39, 650
RsaNI	GTAC	2 cut(s)	38, 649
RseI	CAYNNNNRTG	2 cut(s)	228, 848
SaqAI	TTAA	1 cut(s)	942
SatI	GCNGC	6 cut(s)	188, 411, 467, 470, 505, 807
Sau3AI	GATC	2 cut(s)	78, 793
Sau96I	GGNCC	1 cut(s)	866
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	1 cut(s)	646
SduI	GDGCHC	1 cut(s)	561
SfcI	CTRYAG	2 cut(s)	411, 751
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	2 cut(s)	228, 848
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
SseBI	AGGCCT	1 cut(s)	728
SsiI	CCGC	4 cut(s)	294, 620, 756, 809
SspMI	CTAG	1 cut(s)	791
StuI	AGGCCT	1 cut(s)	728
StyD4I	CCNGG	1 cut(s)	644
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	3 cut(s)	406, 554, 800
TaiI	ACGT	2 cut(s)	219, 633
TaqI	TCGA	6 cut(s)	11, 77, 135, 149, 248, 254
TfiI	GAWTC	1 cut(s)	930
Tru1I	TTAA	1 cut(s)	942
Tru9I	TTAA	1 cut(s)	942
TscAI	CASTG	2 cut(s)	409, 699
TseFI	GTSAC	2 cut(s)	436, 634
TseI	GCWGC	6 cut(s)	187, 410, 466, 469, 504, 806
Tsp45I	GTSAC	2 cut(s)	436, 634
TspDTI	ATGAA	5 cut(s)	112, 366, 529, 917, 945
TspGWI	ACGGA	2 cut(s)	316, 525
TspRI	CASTG	2 cut(s)	409, 699
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XspI	CTAG	1 cut(s)	791
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.