Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Reverse (-)

26655319 .. 26656950

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCTTTCTCTTCATTTTCCAAAGTCTCCCTTCTGCTCTTCATTGTGCCTTTCTTTTTAGGCACTTATTGTCTGGCTCATGACTTTTCAATTGTGGGTTACTCACCCGAGCACTTGTCTTCCATGGACAAGTTCATTGAGCTCTTCGAGTCATGGATATCGAAACATGGCAAGATTTACCACAACATGGAGGAGAAGCTCCATAGGTTTGAGATATTCAGAGACAATGTCAAGCACATTGATGAAAGGAATAAGAAGCTTGATGTTGACAGCTACTGGCTTGGATTGAATGAGTTTGCTGACTTGAGCCATGAAGAGTTCAAAAGCAAGTACTTGGGGCTAAAAGGTGAATCCCCAAGGAGAGACTCCTCTGAAGAAGAGTTCAGTTACCGTGATTTCGACGTAGAAGCATTGCCCAAGTCTGTAGACTGGAGAAAGAAAGGAGCTGTTACTCCAGTCAAGAACCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCTACAGTTGCTGCTGTTGAAGGCATAAACCAGATAGTCACAGGAAACCTAACATCGCTGTCTGAACAGCAACTGATAGATTGTGACAAGTCATTCAACAATGGCTGCAATGGCGGTTTGATGGACTATGCTTTTCAATTTATCATCTCTAATGGTGGGCTTCACAAGGAGGAAGAATACCCCTATATCATGGACGAAGGAACTTGTGAGGAATCAAGGGGACAATCAGAGGTGGTGACCATATCCGGTTATCAAGATGTGCCTCAAAATAGTGAACAAGCTCTCCTCAAGGCACTGGCTCACCAGCCCATTAGTGTTGCTATTGAGGCTTCTGACAGAGATTTCCAGTTCTACAGTGGGGGTGTGTTCAACGGGCGATGTGGAACTGAGCTAGATCATGGTGTAGCAGCAATCGGCTATGGAACATCAAAGGGGTTGGATTACATCATTGTGAAGAACTCATGGGGACCACAGTGGGGAGAGAAGGGATACATAAGGATGAAGAGAAACACAGGAAAGCCGGAAGGAATCTGCGGTATCAACAAAATGGCTTCATATCCCACCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

355

Amino Acids

39.93

Weight (kDa)

5.46

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	49 - 107	7.5e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	138 - 353	1.7e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	2 cut(s)	609, 1029
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	187, 971
AgsI	TTSAA	7 cut(s)	90, 289, 322, 515, 592, 632, 865
AloI	GAACNNNNNNTCC	2 cut(s)	762, 794
AluBI	AGCT	8 cut(s)	142, 199, 259, 273, 446, 483, 776, 886
AluI	AGCT	8 cut(s)	142, 199, 259, 273, 446, 483, 776, 886
Alw21I	GWGCWC	2 cut(s)	114, 144
Alw26I	GTCTC	3 cut(s)	31, 216, 357
AlwNI	CAGNNNCTG	3 cut(s)	276, 506, 568
Ama87I	CYCGRG	1 cut(s)	107
ApeKI	GCWGC	4 cut(s)	483, 506, 600, 902
AspS9I	GGNCC	1 cut(s)	962
AsuHPI	GGTGA	4 cut(s)	96, 359, 742, 788
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	962
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	114, 144
BbvI	GCAGC	4 cut(s)	470, 493, 587, 914
BccI	CCATC	1 cut(s)	610
BciVI	GTATCC	1 cut(s)	977
BcoDI	GTCTC	3 cut(s)	31, 216, 357
BfaI	CTAG	1 cut(s)	887
BfmI	CTRYAG	3 cut(s)	423, 498, 847
BfuI	GTATCC	1 cut(s)	977
BisI	GCNGC	4 cut(s)	484, 507, 601, 903
BlsI	GCNGC	4 cut(s)	485, 508, 602, 904
BmcAI	AGTACT	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	962
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	962
BmiI	GGNNCC	1 cut(s)	963
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	2 cut(s)	438, 451
BpuEI	CTTGAG	2 cut(s)	325, 767
BsaJI	CCNNGG	3 cut(s)	123, 356, 466
BsaWI	WCCGGW	1 cut(s)	740
BsaXI	ACNNNNNCTCC	2 cut(s)	762, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 971
Bse1I	ACTGG	5 cut(s)	281, 434, 455, 795, 841
Bse3DI	GCAATG	2 cut(s)	410, 610
BseDI	CCNNGG	3 cut(s)	123, 356, 466
BseGI	GGATG	1 cut(s)	999
BseLI	CCNNNNNNNGG	2 cut(s)	187, 971
BseMI	GCAATG	2 cut(s)	410, 610
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	5 cut(s)	281, 434, 455, 795, 841
BseRI	GAGGAG	3 cut(s)	206, 358, 770
BseXI	GCAGC	4 cut(s)	470, 493, 587, 914
BseYI	CCCAGC	1 cut(s)	486
BsiHKAI	GWGCWC	2 cut(s)	114, 144
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	741, 1016
BslFI	GGGAC	2 cut(s)	729, 975
BslI	CCNNNNNNNGG	2 cut(s)	187, 971
BsmAI	GTCTC	3 cut(s)	31, 216, 357
BsmFI	GGGAC	2 cut(s)	729, 975
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	114, 144
Bsp143I	GATC	1 cut(s)	889
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	2 cut(s)	609, 1029
BspCNI	CTCAG	1 cut(s)	874
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	963
BspQI	GCTCTTC	2 cut(s)	44, 149
BsrDI	GCAATG	2 cut(s)	410, 610
BsrI	ACTGG	5 cut(s)	281, 434, 455, 795, 841
BssECI	CCNNGG	3 cut(s)	123, 356, 466
BssMI	GATC	1 cut(s)	889
BssT1I	CCWWGG	3 cut(s)	123, 356, 466
Bst4CI	ACNGT	4 cut(s)	392, 502, 851, 969
Bst6I	CTCTTC	6 cut(s)	16, 44, 149, 309, 372, 992
BstDEI	CTNAG	1 cut(s)	882
BstDSI	CCRYGG	1 cut(s)	123
BstEII	GGTNACC	1 cut(s)	730
BstF5I	GGATG	1 cut(s)	999
BstKTI	GATC	1 cut(s)	892
BstMAI	GTCTC	3 cut(s)	31, 216, 357
BstMBI	GATC	1 cut(s)	889
BstMWI	GCNNNNNNNGC	2 cut(s)	606, 821
BstPI	GGTNACC	1 cut(s)	730
BstSFI	CTRYAG	3 cut(s)	423, 498, 847
BstV1I	GCAGC	4 cut(s)	470, 493, 587, 914
BstV2I	GAAGAC	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	977
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	2 cut(s)	534, 886
BtsCI	GGATG	1 cut(s)	999
BtsIMutI	CAGTG	3 cut(s)	788, 856, 974
CaiI	CAGNNNCTG	3 cut(s)	276, 506, 568
CciI	TCATGA	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	962
Csp6I	GTAC	1 cut(s)	331
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	882
DpnI	GATC	1 cut(s)	891
DpnII	GATC	1 cut(s)	889
Eam1104I	CTCTTC	6 cut(s)	16, 44, 149, 309, 372, 992
EarI	CTCTTC	6 cut(s)	16, 44, 149, 309, 372, 992
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	3 cut(s)	123, 356, 466
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	962
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	730
EcoICRI	GAGCTC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	730
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	3 cut(s)	123, 356, 466
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	3 cut(s)	123, 356, 466
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	2 cut(s)	729, 975
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	4 cut(s)	484, 507, 601, 903
FokI	GGATG	1 cut(s)	1006
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	4 cut(s)	484, 507, 601, 903
FspBI	CTAG	1 cut(s)	887
GluI	GCNGC	4 cut(s)	484, 507, 601, 903
GsaI	CCCAGC	1 cut(s)	490
GsuI	CTGGAG	2 cut(s)	438, 451
HapII	CCGG	2 cut(s)	741, 1016
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	5 cut(s)	149, 350, 365, 707, 1023
HpaII	CCGG	2 cut(s)	741, 1016
HphI	GGTGA	4 cut(s)	96, 359, 742, 788
Hpy166II	GTNNAC	3 cut(s)	268, 427, 770
Hpy188I	TCNGA	5 cut(s)	221, 373, 559, 724, 829
Hpy188III	TCNNGA	3 cut(s)	80, 460, 749
Hpy8I	GTNNAC	3 cut(s)	268, 427, 770
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	5 cut(s)	41, 509, 686, 973, 1013
HpyCH4III	ACNGT	4 cut(s)	392, 502, 851, 969
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	1 cut(s)	603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	606, 821
HpyF3I	CTNAG	1 cut(s)	882
HpySE526I	ACGT	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	889
LguI	GCTCTTC	2 cut(s)	44, 149
LmnI	GCTCC	2 cut(s)	204, 443
Lsp1109I	GCAGC	4 cut(s)	470, 493, 587, 914
MaeI	CTAG	1 cut(s)	887
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	6 cut(s)	98, 386, 448, 532, 578, 730
MalI	GATC	1 cut(s)	891
MboI	GATC	1 cut(s)	889
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	114, 144
MluCI	AATT	2 cut(s)	90, 632
MlyI	GAGTC	2 cut(s)	158, 359
MmeI	TCCRAC	1 cut(s)	912
MnlI	CCTC	8 cut(s)	184, 379, 658, 697, 718, 768, 791, 814
MslI	CAYNNNNRTG	3 cut(s)	240, 944, 992
MspI	CCGG	2 cut(s)	741, 1016
MunI	CAATTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	606, 821
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	889
NlaIV	GGNNCC	1 cut(s)	963
NmuCI	GTSAC	3 cut(s)	532, 578, 730
PagI	TCATGA	1 cut(s)	79
PciSI	GCTCTTC	2 cut(s)	44, 149
PfeI	GAWTC	3 cut(s)	350, 707, 1023
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	485, 508, 602, 904
PleI	GAGTC	2 cut(s)	157, 359
PpsI	GAGTC	2 cut(s)	157, 359
Psp124BI	GAGCTC	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	963
PspPI	GGNCC	1 cut(s)	962
PstNI	CAGNNNCTG	3 cut(s)	276, 506, 568
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	3 cut(s)	240, 944, 992
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	2 cut(s)	44, 149
SatI	GCNGC	4 cut(s)	484, 507, 601, 903
Sau3AI	GATC	1 cut(s)	889
Sau96I	GGNCC	1 cut(s)	962
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	2 cut(s)	158, 359
SduI	GDGCHC	2 cut(s)	114, 144
SfcI	CTRYAG	3 cut(s)	423, 498, 847
SinI	GGWCC	1 cut(s)	962
SmiMI	CAYNNNNRTG	3 cut(s)	240, 944, 992
SmlI	CTYRAG	2 cut(s)	304, 782
SmoI	CTYRAG	2 cut(s)	304, 782
Sse9I	AATT	2 cut(s)	90, 632
SsiI	CCGC	2 cut(s)	609, 1029
SspMI	CTAG	1 cut(s)	887
SstI	GAGCTC	1 cut(s)	144
StyI	CCWWGG	3 cut(s)	123, 356, 466
TaaI	ACNGT	4 cut(s)	392, 502, 851, 969
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	3 cut(s)	147, 161, 399
TasI	AATT	2 cut(s)	90, 632
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	350, 707, 1023
TscAI	CASTG	3 cut(s)	795, 856, 974
TseFI	GTSAC	3 cut(s)	532, 578, 730
TseI	GCWGC	4 cut(s)	483, 506, 600, 902
Tsp45I	GTSAC	3 cut(s)	532, 578, 730
TspDTI	ATGAA	7 cut(s)	31, 124, 258, 327, 462, 1010, 1038
TspRI	CASTG	3 cut(s)	795, 856, 974
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	962
XcmI	CCANNNNNNNNNTGG	2 cut(s)	473, 848
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	1 cut(s)	887
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.