Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Forward (+)

14707578 .. 14709401

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTTTCTCTTCATTTTCCAAAGTCTCCCTTCTGCTCTTCATTGTGCCATTCTTTTTAGGCACTTACTCTCTAGCTCATGAGTTTTCGATCGTGGGTTACTCACCTGAGCACTTGTCTTCCATGGACAAGTTCATTGAGCTGTTCGAGTCATGGATATCGAAACATGGCAAGATTTACCACAACATGGAGGAGAAGCTCCATAGATTTGAGATATTCAGAGACAATGTCAAGCACATTGATGAAAGGAATAAGAAGCTTGATGTTGATAGCTACTGGCTTGGTTTGAATGAGTTTGCTGACTTGAGCCATGAAGAGTTCAAGAGCAAGTACTTGGGGCTAAAAGGTGAAGCCCCAAGAAGGAGAGAATCCACTGAAGCAGAGTTCAGTTACCGTGACTTCGATGTAGAGGCATTGCCTAAGTCTGTGGACTGGAGAAAGAAAGGAGCTGTTACACCAGTCAAGAACCAAGGTTCATGTGGTAGCTGTTGGGCATTTTCTACAGTTGCTGCTGTTGAAGGCATAAACCAGATTGTCACAGGAAACCTAACATCACTGTCTGAACAGCAGCTGATCGATTGTGACAAATCATTCAACAATGGCTGCAATGGAGGTTTAATGGACTATGCTTTTGAATTCATCATTGCTAATGGCGGGCTTCACAAGGAGGAAGAATACCCCTATATCATGGAGGAAGGAACTTGTGAGGAATCAAGGGGAGATTCAGAGGTGGTGACCATAACTGGTTATCAAGATGTGCCTCAAAACAATGAACAAGCTCTCCTCAAGGCCCTGGCTCACCAGCCTCTTAGTGTTGCTATTGAGGCCGATGACAGAGATTTCCAGTTCTACAGTGGGGGTGTGTTCAACGGGCACTGCGGAACTGAGCTAGATCATGGTGTAACAGCAGTTGGCTATGGGACATCAAAGGGATTGGATTACATCATTGTGAAGAACTCATGGGGACCAAAGTGGGGAGAGAAGGGATACATAAGGATGAAGAGAAACACAGGAAAGCCAGAAGGAATGTGCGGTATCAACAAAATGGCTTCATATCCCACCAAGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

358

Amino Acids

40.22

Weight (kDa)

5.46

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	49 - 107	7.6e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	139 - 354	8.9e-86	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	187
AciI	CCGC	3 cut(s)	654, 879, 1032
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	3 cut(s)	187, 360, 974
AgsI	TTSAA	6 cut(s)	289, 322, 518, 595, 635, 868
AjnI	CCWGG	1 cut(s)	792
AloI	GAACNNNNNNTCC	2 cut(s)	765, 797
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	31, 216
AlwNI	CAGNNNCTG	2 cut(s)	509, 571
AoxI	GGCC	2 cut(s)	789, 825
ApeKI	GCWGC	3 cut(s)	509, 568, 603
ApoI	RAATTY	1 cut(s)	635
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AspS9I	GGNCC	2 cut(s)	790, 965
AsuHPI	GGTGA	4 cut(s)	96, 359, 745, 791
AvaII	GGWCC	1 cut(s)	965
BaeGI	GKGCMC	1 cut(s)	876
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	496, 580, 590
BciT130I	CCWGG	1 cut(s)	794
BciVI	GTATCC	1 cut(s)	980
BcoDI	GTCTC	2 cut(s)	31, 216
BfaI	CTAG	2 cut(s)	74, 890
BfmI	CTRYAG	2 cut(s)	501, 850
BfuI	GTATCC	1 cut(s)	980
BisI	GCNGC	3 cut(s)	510, 569, 604
BlsI	GCNGC	3 cut(s)	511, 570, 605
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	794
Bme18I	GGWCC	1 cut(s)	965
BmgT120I	GGNCC	2 cut(s)	790, 965
BmiI	GGNNCC	1 cut(s)	966
BmrFI	CCNGG	1 cut(s)	794
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	454
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	325, 770
Bsa29I	ATCGAT	1 cut(s)	576
BsaJI	CCNNGG	3 cut(s)	123, 469, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 360, 974
Bse1I	ACTGG	5 cut(s)	281, 437, 458, 748, 844
Bse3DI	GCAATG	3 cut(s)	413, 613, 642
BseBI	CCWGG	1 cut(s)	794
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	3 cut(s)	123, 469, 792
BseGI	GGATG	1 cut(s)	1002
BseLI	CCNNNNNNNGG	3 cut(s)	187, 360, 974
BseMI	GCAATG	3 cut(s)	413, 613, 642
BseMII	CTCAG	2 cut(s)	99, 876
BseNI	ACTGG	5 cut(s)	281, 437, 458, 748, 844
BseRI	GAGGAG	2 cut(s)	206, 773
BseSI	GKGCMC	1 cut(s)	876
BseXI	GCAGC	3 cut(s)	496, 580, 590
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	791, 827
BshVI	ATCGAT	1 cut(s)	576
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	114
BslFI	GGGAC	2 cut(s)	934, 978
BslI	CCNNNNNNNGG	3 cut(s)	187, 360, 974
BsmAI	GTCTC	2 cut(s)	31, 216
BsmFI	GGGAC	2 cut(s)	934, 978
BsnI	GGCC	2 cut(s)	791, 827
Bsp1286I	GDGCHC	2 cut(s)	114, 876
Bsp143I	GATC	3 cut(s)	90, 573, 892
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	3 cut(s)	654, 879, 1032
BspANI	GGCC	2 cut(s)	791, 827
BspCNI	CTCAG	2 cut(s)	100, 877
BspDI	ATCGAT	1 cut(s)	576
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	966
BspQI	GCTCTTC	1 cut(s)	44
BsrDI	GCAATG	3 cut(s)	413, 613, 642
BsrI	ACTGG	5 cut(s)	281, 437, 458, 748, 844
BssECI	CCNNGG	3 cut(s)	123, 469, 792
BssMI	GATC	3 cut(s)	90, 573, 892
BssT1I	CCWWGG	2 cut(s)	123, 469
Bst2UI	CCWGG	1 cut(s)	794
Bst4CI	ACNGT	4 cut(s)	395, 505, 558, 854
Bst6I	CTCTTC	4 cut(s)	16, 44, 309, 995
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	4 cut(s)	108, 420, 809, 885
BstDSI	CCRYGG	1 cut(s)	123
BstEII	GGTNACC	1 cut(s)	733
BstF5I	GGATG	1 cut(s)	1002
BstKTI	GATC	3 cut(s)	93, 576, 895
BstMAI	GTCTC	2 cut(s)	31, 216
BstMBI	GATC	3 cut(s)	90, 573, 892
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	824
BstNI	CCWGG	1 cut(s)	794
BstPI	GGTNACC	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	792
BstSFI	CTRYAG	2 cut(s)	501, 850
BstSLI	GKGCMC	1 cut(s)	876
BstV1I	GCAGC	3 cut(s)	496, 580, 590
BstV2I	GAAGAC	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	980
BsuRI	GGCC	2 cut(s)	791, 827
BsuTUI	ATCGAT	1 cut(s)	576
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	1002
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	4 cut(s)	372, 554, 859, 874
Cac8I	GCNNGC	1 cut(s)	656
CaiI	CAGNNNCTG	2 cut(s)	509, 571
CciI	TCATGA	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	790, 965
ClaI	ATCGAT	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	331
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	4 cut(s)	108, 420, 809, 885
DpnI	GATC	3 cut(s)	92, 575, 894
DpnII	GATC	3 cut(s)	90, 573, 892
Eam1104I	CTCTTC	4 cut(s)	16, 44, 309, 995
EarI	CTCTTC	4 cut(s)	16, 44, 309, 995
Eco130I	CCWWGG	2 cut(s)	123, 469
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	965
Eco57I	CTGAAG	1 cut(s)	396
Eco91I	GGTNACC	1 cut(s)	733
EcoO109I	RGGNCCY	1 cut(s)	790
EcoO65I	GGTNACC	1 cut(s)	733
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	792
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	123, 469
ErhI	CCWWGG	2 cut(s)	123, 469
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	2 cut(s)	934, 978
FauI	CCCGC	1 cut(s)	647
Fnu4HI	GCNGC	3 cut(s)	510, 569, 604
FokI	GGATG	1 cut(s)	1009
Fsp4HI	GCNGC	3 cut(s)	510, 569, 604
FspBI	CTAG	2 cut(s)	74, 890
GluI	GCNGC	3 cut(s)	510, 569, 604
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	2 cut(s)	791, 827
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	4 cut(s)	149, 368, 710, 722
HphI	GGTGA	4 cut(s)	96, 359, 745, 791
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	3 cut(s)	221, 562, 727
Hpy188III	TCNNGA	4 cut(s)	80, 322, 463, 752
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	6 cut(s)	41, 354, 512, 689, 976, 1016
HpyCH4III	ACNGT	4 cut(s)	395, 505, 558, 854
HpyCH4V	TGCA	1 cut(s)	606
HpyF10VI	GCNNNNNNNGC	1 cut(s)	824
HpyF3I	CTNAG	4 cut(s)	108, 420, 809, 885
Kzo9I	GATC	3 cut(s)	90, 573, 892
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	2 cut(s)	204, 446
Lsp1109I	GCAGC	3 cut(s)	496, 580, 590
MaeI	CTAG	2 cut(s)	74, 890
MaeIII	GTNAC	8 cut(s)	98, 389, 395, 451, 535, 581, 733, 901
MalI	GATC	3 cut(s)	92, 575, 894
MboI	GATC	3 cut(s)	90, 573, 892
MboII	GAAGA	7 cut(s)	3, 31, 111, 326, 683, 964, 1012
MhlI	GDGCHC	2 cut(s)	114, 876
MluCI	AATT	1 cut(s)	635
MlyI	GAGTC	1 cut(s)	158
MseI	TTAA	1 cut(s)	617
MslI	CAYNNNNRTG	3 cut(s)	240, 947, 995
MspA1I	CMGCKG	1 cut(s)	571
MspR9I	CCNGG	1 cut(s)	794
MvaI	CCWGG	1 cut(s)	794
MwoI	GCNNNNNNNGC	1 cut(s)	824
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	3 cut(s)	90, 573, 892
NlaIV	GGNNCC	1 cut(s)	966
NmuCI	GTSAC	4 cut(s)	395, 535, 581, 733
PagI	TCATGA	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	368, 710, 722
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	511, 570, 605
Ple19I	CGATCG	1 cut(s)	93
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	792
PspEI	GGTNACC	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	792
PspN4I	GGNNCC	1 cut(s)	966
PspPI	GGNCC	2 cut(s)	790, 965
PstNI	CAGNNNCTG	2 cut(s)	509, 571
PsyI	GACNNNGTC	1 cut(s)	227
PvuI	CGATCG	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	571
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	3 cut(s)	240, 947, 995
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	3 cut(s)	510, 569, 604
Sau3AI	GATC	3 cut(s)	90, 573, 892
Sau96I	GGNCC	2 cut(s)	790, 965
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	794
SduI	GDGCHC	2 cut(s)	114, 876
SfcI	CTRYAG	2 cut(s)	501, 850
SinI	GGWCC	1 cut(s)	965
SmiMI	CAYNNNNRTG	3 cut(s)	240, 947, 995
SmlI	CTYRAG	2 cut(s)	304, 785
SmoI	CTYRAG	2 cut(s)	304, 785
Sse9I	AATT	1 cut(s)	635
SsiI	CCGC	3 cut(s)	654, 879, 1032
SspMI	CTAG	2 cut(s)	74, 890
StyD4I	CCNGG	1 cut(s)	792
StyI	CCWWGG	2 cut(s)	123, 469
TaaI	ACNGT	4 cut(s)	395, 505, 558, 854
TaqI	TCGA	5 cut(s)	89, 147, 161, 402, 576
TasI	AATT	1 cut(s)	635
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	368, 710, 722
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	4 cut(s)	379, 561, 859, 881
TseFI	GTSAC	4 cut(s)	395, 535, 581, 733
TseI	GCWGC	3 cut(s)	509, 568, 603
Tsp45I	GTSAC	4 cut(s)	395, 535, 581, 733
TspDTI	ATGAA	9 cut(s)	31, 124, 258, 327, 465, 628, 786, 1013, 1041
TspRI	CASTG	4 cut(s)	379, 561, 859, 881
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	965
XapI	RAATTY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	476, 851
XspI	CTAG	2 cut(s)	74, 890
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.