Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Reverse (-)

19674116 .. 19674667

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0139100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAACCACAAAACCGGCAACCAACCGAGGATGGAGGAAGTTACAAAGCAGTCGGGAGTAGTGCTAACATGCTTCGCAAGAACAGCAATACTAGGTGGATTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAACAAGGGAATTAGGTCCCCAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTATGTCAAGATCGAGGGCAAGAACGTCTTTTATTGGTTCGCGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGATAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTCGAATCTTCTGCACCTGCTTCTGCTTCTTTCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATAGCGGTTATGGATCTATGAACATGGAGAAGAGTTCTAAGGATTGTTCAATTTCAGCTGGAGGGGGAACTAGTTCTACTTCCTTTGACATGAATGGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

183

Amino Acids

20.57

Weight (kDa)

9.2

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	3.5e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	1 cut(s)	400
AccII	CGCG	1 cut(s)	248
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	3 cut(s)	194, 369, 469
AgsI	TTSAA	1 cut(s)	498
AhlI	ACTAGT	1 cut(s)	518
AluBI	AGCT	3 cut(s)	136, 199, 506
AluI	AGCT	3 cut(s)	136, 199, 506
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	3 cut(s)	194, 369, 469
Ama87I	CYCGRG	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	520
AspS9I	GGNCC	2 cut(s)	159, 282
AsuHPI	GGTGA	1 cut(s)	341
AsuII	TTCGAA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	159, 282
BaeGI	GKGCMC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BccI	CCATC	2 cut(s)	26, 433
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	2 cut(s)	93, 519
BfmI	CTRYAG	3 cut(s)	108, 168, 448
BfuAI	ACCTGC	1 cut(s)	400
Bme18I	GGWCC	2 cut(s)	159, 282
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	159, 282
BmiI	GGNNCC	2 cut(s)	6, 161
BpmI	CTGGAG	2 cut(s)	179, 528
Bpu14I	TTCGAA	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 298
BseJI	GATNNNNATC	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	306
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	261
Bsp119I	TTCGAA	1 cut(s)	378
Bsp1286I	GDGCHC	2 cut(s)	262, 306
Bsp143I	GATC	6 cut(s)	112, 186, 216, 314, 361, 461
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	6, 161
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	3 cut(s)	194, 369, 469
BspT104I	TTCGAA	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	112, 186, 216, 314, 361, 461
Bst6I	CTCTTC	2 cut(s)	272, 473
BstBI	TTCGAA	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	486
BstF5I	GGATG	2 cut(s)	37, 298
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	6 cut(s)	115, 189, 219, 317, 364, 464
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	6 cut(s)	112, 186, 216, 314, 361, 461
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 407
BstNSI	RCATGY	1 cut(s)	73
BstSFI	CTRYAG	3 cut(s)	108, 168, 448
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	1 cut(s)	248
BstX2I	RGATCY	2 cut(s)	186, 461
BstYI	RGATCY	2 cut(s)	186, 461
BtsCI	GGATG	2 cut(s)	37, 298
BtuMI	TCGCGA	1 cut(s)	248
BveI	ACCTGC	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	159, 282
CviAII	CATG	6 cut(s)	70, 299, 307, 356, 472, 538
CviJI	RGCY	5 cut(s)	136, 199, 260, 322, 506
CviKI_1	RGCY	5 cut(s)	136, 199, 260, 322, 506
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	6 cut(s)	114, 188, 218, 316, 363, 463
DpnII	GATC	6 cut(s)	112, 186, 216, 314, 361, 461
Eam1104I	CTCTTC	2 cut(s)	272, 473
EarI	CTCTTC	2 cut(s)	272, 473
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	159, 282
Eco88I	CYCGRG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	6 cut(s)	73, 302, 310, 359, 475, 541
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	6 cut(s)	69, 298, 306, 355, 471, 537
FokI	GGATG	2 cut(s)	44, 305
FriOI	GRGCYC	1 cut(s)	262
FspBI	CTAG	2 cut(s)	93, 519
GsuI	CTGGAG	2 cut(s)	179, 528
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	6 cut(s)	73, 302, 310, 359, 475, 541
HinfI	GANTC	4 cut(s)	100, 123, 178, 380
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	3 cut(s)	117, 183, 292
Hpy188III	TCNNGA	4 cut(s)	55, 214, 247, 263
Hpy8I	GTNNAC	1 cut(s)	285
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	310, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 407
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	73, 302, 310, 359, 475, 541
Kzo9I	GATC	6 cut(s)	112, 186, 216, 314, 361, 461
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	29, 209, 303, 396, 405, 492
MaeI	CTAG	2 cut(s)	93, 519
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	41, 340
MalI	GATC	6 cut(s)	114, 188, 218, 316, 363, 463
MboI	GATC	6 cut(s)	112, 186, 216, 314, 361, 461
MboII	GAAGA	4 cut(s)	286, 289, 375, 490
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	2 cut(s)	186, 461
MhlI	GDGCHC	2 cut(s)	262, 306
MluCI	AATT	3 cut(s)	153, 346, 498
MnlI	CCTC	8 cut(s)	22, 29, 137, 177, 214, 273, 352, 503
MroXI	GAANNNNTTC	1 cut(s)	520
MseI	TTAA	2 cut(s)	372, 429
MspA1I	CMGCKG	2 cut(s)	199, 506
MspI	CCGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	84, 407
NdeII	GATC	6 cut(s)	112, 186, 216, 314, 361, 461
NlaIII	CATG	6 cut(s)	73, 302, 310, 359, 475, 541
NlaIV	GGNNCC	2 cut(s)	6, 161
NruI	TCGCGA	1 cut(s)	248
NspI	RCATGY	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	378
PaqCI	CACCTGC	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	4 cut(s)	100, 123, 178, 380
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	6, 161
PspPI	GGNCC	2 cut(s)	159, 282
PspPPI	RGGWCCY	1 cut(s)	159
PsrI	GAACNNNNNNTAC	2 cut(s)	508, 540
PsuI	RGATCY	2 cut(s)	186, 461
PvuII	CAGCTG	2 cut(s)	199, 506
RruI	TCGCGA	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	372, 429
Sau3AI	GATC	6 cut(s)	112, 186, 216, 314, 361, 461
Sau96I	GGNCC	2 cut(s)	159, 282
SduI	GDGCHC	2 cut(s)	262, 306
SetI	ASST	8 cut(s)	98, 138, 161, 201, 234, 284, 394, 508
SfcI	CTRYAG	3 cut(s)	108, 168, 448
SfuI	TTCGAA	1 cut(s)	378
SinI	GGWCC	2 cut(s)	159, 282
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	3 cut(s)	153, 346, 498
SsiI	CCGC	1 cut(s)	453
SspMI	CTAG	2 cut(s)	93, 519
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	219, 378
TasI	AATT	3 cut(s)	153, 346, 498
TfiI	GAWTC	4 cut(s)	100, 123, 178, 380
Tru1I	TTAA	2 cut(s)	372, 429
Tru9I	TTAA	2 cut(s)	372, 429
TspDTI	ATGAA	2 cut(s)	287, 482
VpaK11BI	GGWCC	2 cut(s)	159, 282
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	2 cut(s)	93, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.