Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Forward (+)

35252747 .. 35254397

Gene Structure 1651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1242400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCATTTTCGAAGATTTCCCTTCTTTCCTTCCTTGTACCTCTCTTTCTCGGTTCTGCTCTGGCTCACGAGTTCTCGATCGTGGGATATTCTCCCGAGGACTTGACCTGCATGGACAAGTTCATCATGCTTTTCGAGAAGTGGATATCGAAGCATGGCAAGATTTATGAGAGCATGGAGGAGAAGCTGCATAGGTTTGAGATTTTCAGAGACAACGTGAAGCACATTGATGAGAGGAATAAGAACCTCGATGTCGATAGCTACTGGCTTGGTGTGAATGAGTTTGCTGACTTGAGCCATGAGGAGTTCAAGAGCAAGTACTTGGGTCTCAAGGCTGAGTTCCCCAGAAGGAGAGAGTCTACTGGAGATTTCAGTTACCGCGATTTTGATGTAGAGGCATTGCCCAAATCCGTGGACTGGCGAAAGAAAGGAGCTGTAACCTCCATCAAGAACCAAGGTTCATGTGGTAGCTGTTGGGCATTTTCCACTGTTGCTGCAGTTGAGGGCATAAACCAGATAGTCACAGGAAACCTAACATCCCTGTCTGAGCAGCAGCTGATAGATTGCGACAAAGCATTCAACAATGGCTGCAACGGAGGCTTGATGGATTATGCATTTGAGTTCATAATCTCCAACGGTGGGCTCCACAAGGAGGATGATTACCCCTACATTATGGAGGAAGGAACTTGTGAGGGAAAGAAGGCGGAGTCAAACGTAGTGACTATCACCGGGTACCAAGATGTGCCTGAAAACAACGAGCAAGCTCTCCTCAAGGCACTGGCAAACCAGCCTCTCAGCGTGGCTATTGAGGCCTCTGGCAGAGATTTCCAGTTCTATAGCGGGGGGGTTTTCAACGGGCGTTGTGGAACCGAGCTAGATCACGGTGTAGCAGCGGTCGGGTATGGAACTCAGAAGGGGTTAGATTACATCATTGTGAAGAACTCATGGGGGCCAAAGTGGGGAGAAAAGGGATACATAAGGATGAAGAGGAACACGGGGAAACCAGAAGGAATCTGTGGTATTAACAAGATGGCTTCATATCCTACCAAAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

353

Amino Acids

39.43

Weight (kDa)

5.76

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	45 - 103	2.4e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	134 - 349	7.3e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
Acc65I	GGTACC	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	732
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	1 cut(s)	381
AciI	CCGC	4 cut(s)	379, 704, 840, 893
AfaI	GTAC	3 cut(s)	39, 320, 734
AfiI	CCNNNNNNNGG	4 cut(s)	417, 639, 652, 959
AgsI	TTSAA	3 cut(s)	310, 580, 853
AluBI	AGCT	7 cut(s)	187, 261, 434, 471, 556, 764, 874
AluI	AGCT	7 cut(s)	187, 261, 434, 471, 556, 764, 874
Alw26I	GTCTC	2 cut(s)	204, 332
AlwNI	CAGNNNCTG	1 cut(s)	556
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	810, 950
ApeKI	GCWGC	6 cut(s)	187, 494, 550, 553, 588, 890
Asp718I	GGTACC	1 cut(s)	732
AspS9I	GGNCC	1 cut(s)	950
AsuC2I	CCSGG	1 cut(s)	730
AsuHPI	GGTGA	1 cut(s)	718
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	645
BauI	CACGAG	1 cut(s)	68
BbvI	GCAGC	6 cut(s)	174, 481, 562, 565, 575, 902
BccI	CCATC	3 cut(s)	452, 598, 1024
BciVI	GTATCC	1 cut(s)	965
BcnI	CCSGG	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	204, 332
BfaI	CTAG	1 cut(s)	875
BfmI	CTRYAG	2 cut(s)	495, 835
BfuAI	ACCTGC	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	965
BisI	GCNGC	6 cut(s)	188, 495, 551, 554, 589, 891
BlsI	GCNGC	6 cut(s)	189, 496, 552, 555, 590, 892
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	730
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	950
BmiI	GGNNCC	4 cut(s)	644, 734, 868, 951
BmrFI	CCNGG	1 cut(s)	730
BpmI	CTGGAG	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	3 cut(s)	313, 314, 755
BpuMI	CCSGG	1 cut(s)	730
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	96, 411, 454
Bsc4I	CCNNNNNNNGG	4 cut(s)	417, 639, 652, 959
Bse1I	ACTGG	5 cut(s)	269, 367, 422, 783, 829
Bse3DI	GCAATG	1 cut(s)	398
BseDI	CCNNGG	3 cut(s)	96, 411, 454
BseGI	GGATG	3 cut(s)	536, 661, 987
BseLI	CCNNNNNNNGG	4 cut(s)	417, 639, 652, 959
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	4 cut(s)	327, 537, 808, 923
BseNI	ACTGG	5 cut(s)	269, 367, 422, 783, 829
BseRI	GAGGAG	3 cut(s)	194, 317, 758
BseXI	GCAGC	6 cut(s)	174, 481, 562, 565, 575, 902
Bsh1236I	CGCG	1 cut(s)	381
Bsh1285I	CGRYCG	2 cut(s)	81, 897
BshFI	GGCC	2 cut(s)	812, 952
BshNI	GGYRCC	1 cut(s)	732
BsiEI	CGRYCG	2 cut(s)	81, 897
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	729
BslI	CCNNNNNNNGG	4 cut(s)	417, 639, 652, 959
BsmAI	GTCTC	2 cut(s)	204, 332
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	2 cut(s)	812, 952
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	2 cut(s)	78, 877
BspACI	CCGC	4 cut(s)	379, 704, 840, 893
BspANI	GGCC	2 cut(s)	812, 952
BspCNI	CTCAG	4 cut(s)	328, 538, 807, 922
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	4 cut(s)	644, 734, 868, 951
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	732
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	5 cut(s)	269, 367, 422, 783, 829
BssECI	CCNNGG	3 cut(s)	96, 411, 454
BssMI	GATC	2 cut(s)	78, 877
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	490, 638, 884
Bst6I	CTCTTC	1 cut(s)	980
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	4 cut(s)	336, 546, 794, 909
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	3 cut(s)	536, 661, 987
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	2 cut(s)	81, 880
BstMAI	GTCTC	2 cut(s)	204, 332
BstMBI	GATC	2 cut(s)	78, 877
BstMCI	CGRYCG	2 cut(s)	81, 897
BstMWI	GCNNNNNNNGC	2 cut(s)	597, 809
BstSCI	CCNGG	1 cut(s)	728
BstSFI	CTRYAG	2 cut(s)	495, 835
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	6 cut(s)	174, 481, 562, 565, 575, 902
BstXI	CCANNNNNNTGG	1 cut(s)	412
BsuI	GTATCC	1 cut(s)	965
BsuRI	GGCC	2 cut(s)	812, 952
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	3 cut(s)	536, 661, 987
BtsIMutI	CAGTG	2 cut(s)	486, 776
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	762
CaiI	CAGNNNCTG	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	950
Csp6I	GTAC	3 cut(s)	38, 319, 733
CviAII	CATG	7 cut(s)	112, 127, 155, 175, 299, 462, 945
CviQI	GTAC	3 cut(s)	38, 319, 733
DdeI	CTNAG	4 cut(s)	336, 546, 794, 909
DpnI	GATC	2 cut(s)	80, 879
DpnII	GATC	2 cut(s)	78, 877
Eam1104I	CTCTTC	1 cut(s)	980
EarI	CTCTTC	1 cut(s)	980
EciI	GGCGGA	1 cut(s)	719
Eco130I	CCWWGG	1 cut(s)	454
Eco147I	AGGCCT	1 cut(s)	812
Eco24I	GRGCYC	1 cut(s)	645
Eco31I	GGTCTC	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	454
EcoT22I	ATGCAT	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	7 cut(s)	115, 130, 158, 178, 302, 465, 948
FatI	CATG	7 cut(s)	111, 126, 154, 174, 298, 461, 944
FauI	CCCGC	1 cut(s)	833
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	6 cut(s)	188, 495, 551, 554, 589, 891
FokI	GGATG	3 cut(s)	523, 668, 994
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	6 cut(s)	188, 495, 551, 554, 589, 891
FspBI	CTAG	1 cut(s)	875
GluI	GCNGC	6 cut(s)	188, 495, 551, 554, 589, 891
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	812, 952
HapII	CCGG	1 cut(s)	729
Hin1II	CATG	7 cut(s)	115, 130, 158, 178, 302, 465, 948
HinfI	GANTC	3 cut(s)	356, 707, 1011
HpaII	CCGG	1 cut(s)	729
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	2 cut(s)	360, 415
Hpy188I	TCNGA	3 cut(s)	209, 547, 912
Hpy188III	TCNNGA	6 cut(s)	68, 76, 95, 136, 310, 448
Hpy8I	GTNNAC	2 cut(s)	360, 415
HpyAV	CCTTC	7 cut(s)	32, 40, 342, 674, 694, 907, 1001
HpyCH4III	ACNGT	3 cut(s)	490, 638, 884
HpyCH4IV	ACGT	2 cut(s)	216, 714
HpyCH4V	TGCA	5 cut(s)	111, 190, 497, 591, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	597, 809
HpyF3I	CTNAG	4 cut(s)	336, 546, 794, 909
HpySE526I	ACGT	2 cut(s)	216, 714
Hsp92II	CATG	7 cut(s)	115, 130, 158, 178, 302, 465, 948
KpnI	GGTACC	1 cut(s)	736
Kzo9I	GATC	2 cut(s)	78, 877
LmnI	GCTCC	2 cut(s)	431, 648
Lsp1109I	GCAGC	6 cut(s)	174, 481, 562, 565, 575, 902
MaeI	CTAG	1 cut(s)	875
MaeII	ACGT	2 cut(s)	216, 714
MaeIII	GTNAC	4 cut(s)	374, 436, 520, 718
MalI	GATC	2 cut(s)	80, 879
MboI	GATC	2 cut(s)	78, 877
MboII	GAAGA	3 cut(s)	25, 949, 997
MhlI	GDGCHC	1 cut(s)	645
MlyI	GAGTC	2 cut(s)	365, 716
MmeI	TCCRAC	1 cut(s)	657
Mph1103I	ATGCAT	1 cut(s)	616
MseI	TTAA	1 cut(s)	1023
MslI	CAYNNNNRTG	3 cut(s)	228, 932, 980
MspA1I	CMGCKG	2 cut(s)	556, 893
MspI	CCGG	1 cut(s)	729
MspR9I	CCNGG	1 cut(s)	730
Mva1269I	GAATGC	1 cut(s)	575
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	597, 809
NciI	CCSGG	1 cut(s)	730
NdeII	GATC	2 cut(s)	78, 877
NlaIII	CATG	7 cut(s)	115, 130, 158, 178, 302, 465, 948
NlaIV	GGNNCC	4 cut(s)	644, 734, 868, 951
NmuCI	GTSAC	2 cut(s)	520, 718
NsiI	ATGCAT	1 cut(s)	616
NspV	TTCGAA	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	812
PctI	GAATGC	1 cut(s)	575
PfeI	GAWTC	1 cut(s)	1011
PkrI	GCNGC	6 cut(s)	189, 496, 552, 555, 590, 892
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	2 cut(s)	364, 715
PpsI	GAGTC	2 cut(s)	364, 715
PspN4I	GGNNCC	4 cut(s)	644, 734, 868, 951
PspPI	GGNCC	1 cut(s)	950
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	556
PvuI	CGATCG	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	3 cut(s)	39, 320, 734
RsaNI	GTAC	3 cut(s)	38, 319, 733
RseI	CAYNNNNRTG	3 cut(s)	228, 932, 980
SaqAI	TTAA	1 cut(s)	1023
SatI	GCNGC	6 cut(s)	188, 495, 551, 554, 589, 891
Sau3AI	GATC	2 cut(s)	78, 877
Sau96I	GGNCC	1 cut(s)	950
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	2 cut(s)	365, 716
ScrFI	CCNGG	1 cut(s)	730
SduI	GDGCHC	1 cut(s)	645
SfcI	CTRYAG	2 cut(s)	495, 835
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	3 cut(s)	228, 932, 980
SmlI	CTYRAG	3 cut(s)	292, 329, 770
SmoI	CTYRAG	3 cut(s)	292, 329, 770
SseBI	AGGCCT	1 cut(s)	812
SsiI	CCGC	4 cut(s)	379, 704, 840, 893
SspMI	CTAG	1 cut(s)	875
StuI	AGGCCT	1 cut(s)	812
StyD4I	CCNGG	1 cut(s)	728
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	3 cut(s)	490, 638, 884
TaiI	ACGT	2 cut(s)	219, 717
TaqI	TCGA	6 cut(s)	11, 77, 135, 149, 249, 255
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	1011
Tru1I	TTAA	1 cut(s)	1023
Tru9I	TTAA	1 cut(s)	1023
TscAI	CASTG	2 cut(s)	493, 783
TseFI	GTSAC	2 cut(s)	520, 718
TseI	GCWGC	6 cut(s)	187, 494, 550, 553, 588, 890
Tsp45I	GTSAC	2 cut(s)	520, 718
TspDTI	ATGAA	5 cut(s)	112, 450, 613, 998, 1026
TspGWI	ACGGA	2 cut(s)	400, 609
TspRI	CASTG	2 cut(s)	493, 783
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	1 cut(s)	875
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.