Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Reverse (-)

24693889 .. 24695144

Gene Structure 1256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTTTCTCTTCATTTTCCAAAGTCTCCCTTCTGCTCTTCATTGTGCCTTTCTGTTTAGGCACTTATTGTCTGGCTCATGATTTTTCGATCGTGGGTTATTCACCTGAGCACTTATCTTCCATGGACAAGTTCATTGAGCTCTTCGAGTCATGGATATCGAAACATGGCAAGATTTACCACAACATGGAGGAGAAGCTCCATAGGTTCGAGATATTCAGAGACAATGTCAAGCACATTGATGAAAGGAATAAGAAGCTTGATGTTGACAGCTACTGGCTTGGATTGAATGAGTTTGCTGACTTGAGCCACGAAGAGTTCAAAAGCAAGTACTTGGGGCTAAAAGGTGAATCCCCAAGAAGGAGAGACTCCTCTGAAGAAGAGTTCAGTTACCGTGATTTCGACGTAGAGGCATTGCCCAAGTCTGTGGACTGGAGAAAGAAAGGAGCTGTTACTCCAGTCAAGAACCAAGGTTCATGTGGTAGCTGTTGGGCATTTTCTACAGTTGCTGCTGTTGAAGGCATAAACCAGATAGTCACAGGAAACCTAACATCGCTGTCTGAACAGCAACTGATAGATTGTGACAAATCATTCAACAATGGCTGCAATGGCGGTTTGATGGACTATGCTTTTCAATTTATCATCTCTAACGGTGGGCTTCACAAGGAGGAAGAATACCCCTATATCATGGACGAAGGAACTTGTGAGGAATCAAGGGGACAATCAGAGGTGGTGACCATATCTGGTTATCAAGATGTGCCTCAAAATAGTGAACAAGCTCTCCTCAAGGCACTGGCTCACCAGCCCATTAGTGTTGCTATTGAGGCCTCTGACAGAGATTTCCAGTTCTACAGTGGGGTAAGCCTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

291

Amino Acids

32.86

Weight (kDa)

4.98

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	49 - 107	5.4e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	139 - 285	3.4e-56	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	871
AccB7I	CCANNNNNTGG	1 cut(s)	187
AciI	CCGC	1 cut(s)	612
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	187, 360
AgsI	TTSAA	5 cut(s)	289, 322, 518, 595, 635
AloI	GAACNNNNNNTCC	2 cut(s)	765, 797
AluBI	AGCT	7 cut(s)	142, 199, 259, 273, 449, 486, 779
AluI	AGCT	7 cut(s)	142, 199, 259, 273, 449, 486, 779
Alw21I	GWGCWC	2 cut(s)	114, 144
Alw26I	GTCTC	3 cut(s)	31, 216, 360
AlwNI	CAGNNNCTG	3 cut(s)	276, 509, 571
AoxI	GGCC	1 cut(s)	825
ApeKI	GCWGC	2 cut(s)	509, 603
AsuHPI	GGTGA	4 cut(s)	96, 359, 745, 791
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	114, 144
BbvI	GCAGC	2 cut(s)	496, 590
BccI	CCATC	1 cut(s)	613
BcoDI	GTCTC	3 cut(s)	31, 216, 360
BfmI	CTRYAG	2 cut(s)	501, 850
BisI	GCNGC	2 cut(s)	510, 604
BlsI	GCNGC	2 cut(s)	511, 605
BmcAI	AGTACT	1 cut(s)	332
BpmI	CTGGAG	2 cut(s)	441, 454
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	325, 770
BsaJI	CCNNGG	2 cut(s)	123, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 360
Bse1I	ACTGG	5 cut(s)	281, 437, 458, 798, 844
Bse3DI	GCAATG	2 cut(s)	413, 613
BseDI	CCNNGG	2 cut(s)	123, 469
BseLI	CCNNNNNNNGG	2 cut(s)	187, 360
BseMI	GCAATG	2 cut(s)	413, 613
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	5 cut(s)	281, 437, 458, 798, 844
BseRI	GAGGAG	3 cut(s)	206, 361, 773
BseXI	GCAGC	2 cut(s)	496, 590
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	827
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	114, 144
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	2 cut(s)	187, 360
BsmAI	GTCTC	3 cut(s)	31, 216, 360
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	1 cut(s)	827
Bsp1286I	GDGCHC	2 cut(s)	114, 144
Bsp143I	GATC	1 cut(s)	90
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	1 cut(s)	612
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	79
BspQI	GCTCTTC	2 cut(s)	44, 149
BsrDI	GCAATG	2 cut(s)	413, 613
BsrI	ACTGG	5 cut(s)	281, 437, 458, 798, 844
BssECI	CCNNGG	2 cut(s)	123, 469
BssMI	GATC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	123, 469
Bst4CI	ACNGT	4 cut(s)	395, 505, 653, 854
Bst6I	CTCTTC	5 cut(s)	16, 44, 149, 309, 375
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	123
BstEII	GGTNACC	1 cut(s)	733
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	3 cut(s)	31, 216, 360
BstMBI	GATC	1 cut(s)	90
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	609, 824
BstPI	GGTNACC	1 cut(s)	733
BstSFI	CTRYAG	2 cut(s)	501, 850
BstV1I	GCAGC	2 cut(s)	496, 590
BstXI	CCANNNNNNTGG	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	827
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	537
BtsIMutI	CAGTG	2 cut(s)	791, 859
CaiI	CAGNNNCTG	3 cut(s)	276, 509, 571
CciI	TCATGA	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	7 cut(s)	80, 124, 153, 167, 187, 477, 688
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eam1104I	CTCTTC	5 cut(s)	16, 44, 149, 309, 375
EarI	CTCTTC	5 cut(s)	16, 44, 149, 309, 375
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	123, 469
Eco147I	AGGCCT	1 cut(s)	827
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	396
Eco91I	GGTNACC	1 cut(s)	733
EcoICRI	GAGCTC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	733
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	123, 469
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	123, 469
FaeI	CATG	7 cut(s)	83, 127, 156, 170, 190, 480, 691
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	7 cut(s)	79, 123, 152, 166, 186, 476, 687
Fnu4HI	GCNGC	2 cut(s)	510, 604
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	510, 604
GluI	GCNGC	2 cut(s)	510, 604
GsuI	CTGGAG	2 cut(s)	441, 454
HaeIII	GGCC	1 cut(s)	827
Hin1II	CATG	7 cut(s)	83, 127, 156, 170, 190, 480, 691
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	4 cut(s)	149, 350, 368, 710
HphI	GGTGA	4 cut(s)	96, 359, 745, 791
Hpy166II	GTNNAC	3 cut(s)	268, 430, 773
Hpy188I	TCNGA	5 cut(s)	221, 376, 562, 727, 832
Hpy188III	TCNNGA	4 cut(s)	80, 211, 463, 752
Hpy8I	GTNNAC	3 cut(s)	268, 430, 773
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	4 cut(s)	41, 354, 512, 689
HpyCH4III	ACNGT	4 cut(s)	395, 505, 653, 854
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	1 cut(s)	606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	609, 824
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	7 cut(s)	83, 127, 156, 170, 190, 480, 691
Kzo9I	GATC	1 cut(s)	90
LguI	GCTCTTC	2 cut(s)	44, 149
LmnI	GCTCC	2 cut(s)	204, 446
Lsp1109I	GCAGC	2 cut(s)	496, 590
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	5 cut(s)	389, 451, 535, 581, 733
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	8 cut(s)	3, 31, 111, 136, 326, 389, 392, 683
MhlI	GDGCHC	2 cut(s)	114, 144
MluCI	AATT	1 cut(s)	635
MlyI	GAGTC	2 cut(s)	158, 362
MslI	CAYNNNNRTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	609, 824
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	7 cut(s)	83, 127, 156, 170, 190, 480, 691
NmuCI	GTSAC	3 cut(s)	535, 581, 733
PagI	TCATGA	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	827
PciSI	GCTCTTC	2 cut(s)	44, 149
PfeI	GAWTC	2 cut(s)	350, 710
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	511, 605
Ple19I	CGATCG	1 cut(s)	93
PleI	GAGTC	2 cut(s)	157, 362
PpsI	GAGTC	2 cut(s)	157, 362
PsiI	TTATAA	1 cut(s)	871
Psp124BI	GAGCTC	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	733
PstNI	CAGNNNCTG	3 cut(s)	276, 509, 571
PsyI	GACNNNGTC	1 cut(s)	227
PvuI	CGATCG	1 cut(s)	93
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	2 cut(s)	44, 149
SatI	GCNGC	2 cut(s)	510, 604
Sau3AI	GATC	1 cut(s)	90
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	2 cut(s)	158, 362
SduI	GDGCHC	2 cut(s)	114, 144
SfcI	CTRYAG	2 cut(s)	501, 850
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	304, 785
SmoI	CTYRAG	2 cut(s)	304, 785
Sse9I	AATT	1 cut(s)	635
SseBI	AGGCCT	1 cut(s)	827
SsiI	CCGC	1 cut(s)	612
SstI	GAGCTC	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	827
StyI	CCWWGG	2 cut(s)	123, 469
TaaI	ACNGT	4 cut(s)	395, 505, 653, 854
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	5 cut(s)	89, 147, 161, 210, 402
TasI	AATT	1 cut(s)	635
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	350, 710
TscAI	CASTG	2 cut(s)	798, 859
TseFI	GTSAC	3 cut(s)	535, 581, 733
TseI	GCWGC	2 cut(s)	509, 603
Tsp45I	GTSAC	3 cut(s)	535, 581, 733
TspDTI	ATGAA	4 cut(s)	31, 124, 258, 465
TspRI	CASTG	2 cut(s)	798, 859
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	2 cut(s)	476, 851
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.