Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006181

Physical Location & Seq

Genomic Coordinates Reverse (-)

7265794 .. 7267377

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGATCGATTTACGCTATAAAGAATGCTACTTGCTCATCTGTCTTATCGTCTTCATAAATTTTGTGACTTGTTATAGCGATGAGAGACTGTTTGGTGGAAAAACTTTATATGCTGGGAAGGAACTTTGGAAAGAGACACTGCCATTGAAATCTGGATCTCGAGTTTACAAATTACAAGGGCTTAAGTCGAACTCTTGGTATGAAGTCAAGATATCATACCCAGCTTCTATACCGGCTCTATTTTCGCTGCAATTACTGAAGAACGGTGTAATGGGTTTGAAGGTTAACCATATGAGGAGATTACTAAACACTGAGAAGTTGATCTTCAAAACAGAAAGTATTGAAGAAGTTGATAACAAGGAGGGATTGTATGTTTTGGTGACGGTGGAACCTGAAGGAATCGTGGCTATACCAAATGTTAAAGAAAGACCGTCCATCATTTACAACATAGTTTGTGAAGAACAGCTCTTAGGCATCCCTCACTCAAGCTGGTCAGTGGTGGTTTTAGTAGTTTTGTGTCTCGTTGTCGCGTTGATTCTTCCCCGGTTCCTCCCATCTTATCTTCTGATCAAAGATGTAGATCGTGATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

22.55

Weight (kDa)

8.52

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20890 AT1G20890 AT1G76480 AT1G76480
fragaria_vesca	FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150
malus_domestica	MD08G1109000.v1.1
prunus_persica	Prupe.1G443600_v2.0.a1 Prupe.1G443800_v2.0.a1
pyrus_communis	pycom08g09080
rosa_chinensis	RchiOBHm_Chr6g0306801
rosa_laevigata	RLG00000010765
rosa_multiflora	Rmu_sc0009381.1_g000002
rosa_rugosa	Rorug06G0353000 Rorug06G0353100 Rorug06G0353100 Rorug06G0353100
rosa_samantha	Rh6AG464800 Rh6AG464900 Rh6BG435900 Rh6CG479300 Rh6DG466200
rosa_wichuraiana	Rw6G040510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	530
AclWI	GGATC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	2 cut(s)	278, 414
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	148, 280, 328, 344
AluBI	AGCT	3 cut(s)	224, 466, 489
AluI	AGCT	3 cut(s)	224, 466, 489
Alw26I	GTCTC	3 cut(s)	79, 128, 524
AlwI	GGATC	1 cut(s)	163
Ama87I	CYCGRG	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	2 cut(s)	443, 562
BclI	TGATCA	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	3 cut(s)	79, 128, 524
BfrI	CTTAAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	544
BmeT110I	CYCGRG	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	390, 548
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	469
BpuMI	CCSGG	1 cut(s)	544
Bsa29I	ATCGAT	1 cut(s)	6
BsaBI	GATNNNNATC	2 cut(s)	579, 585
BsaJI	CCNNGG	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bse118I	RCCGGY	1 cut(s)	232
Bse8I	GATNNNNATC	2 cut(s)	579, 585
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	1 cut(s)	474
BseJI	GATNNNNATC	2 cut(s)	579, 585
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	234
BseYI	CCCAGC	2 cut(s)	113, 220
Bsh1236I	CGCG	1 cut(s)	530
BshVI	ATCGAT	1 cut(s)	6
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	233, 544
BsmAI	GTCTC	3 cut(s)	79, 128, 524
BsmI	GAATGC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	159
Bsp143I	GATC	6 cut(s)	3, 155, 321, 567, 580, 586
BspCNI	CTCAG	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	2 cut(s)	390, 548
BspPI	GGATC	1 cut(s)	163
BspTI	CTTAAG	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	6 cut(s)	3, 155, 321, 567, 580, 586
Bst4CI	ACNGT	4 cut(s)	90, 266, 385, 432
BstAFI	CTTAAG	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	312, 469
BstF5I	GGATG	1 cut(s)	474
BstFNI	CGCG	1 cut(s)	530
BstKTI	GATC	6 cut(s)	6, 158, 324, 570, 583, 589
BstMAI	GTCTC	3 cut(s)	79, 128, 524
BstMBI	GATC	6 cut(s)	3, 155, 321, 567, 580, 586
BstSCI	CCNGG	1 cut(s)	542
BstUI	CGCG	1 cut(s)	530
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	474
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	3 cut(s)	137, 309, 501
Cfr10I	RCCGGY	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	6
CviJI	RGCY	6 cut(s)	181, 224, 236, 407, 466, 489
CviKI_1	RGCY	6 cut(s)	181, 224, 236, 407, 466, 489
DdeI	CTNAG	2 cut(s)	312, 469
DpnI	GATC	6 cut(s)	5, 157, 323, 569, 582, 588
DpnII	GATC	6 cut(s)	3, 155, 321, 567, 580, 586
Eco32I	GATATC	1 cut(s)	213
Eco57I	CTGAAG	2 cut(s)	278, 414
Eco88I	CYCGRG	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	213
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FauNDI	CATATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	248
GsaI	CCCAGC	2 cut(s)	117, 224
HapII	CCGG	2 cut(s)	233, 544
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	399, 535
HpaI	GTTAAC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	233, 544
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	2 cut(s)	166, 286
Hpy188I	TCNGA	1 cut(s)	567
Hpy188III	TCNNGA	4 cut(s)	153, 159, 208, 584
Hpy8I	GTNNAC	2 cut(s)	166, 286
HpyAV	CCTTC	3 cut(s)	112, 274, 389
HpyCH4III	ACNGT	4 cut(s)	90, 266, 385, 432
HpyCH4V	TGCA	1 cut(s)	250
HpyF3I	CTNAG	2 cut(s)	312, 469
Ksp22I	TGATCA	1 cut(s)	567
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	6 cut(s)	3, 155, 321, 567, 580, 586
LpnPI	CCDG	7 cut(s)	99, 138, 234, 246, 405, 475, 557
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	64, 379
MalI	GATC	6 cut(s)	5, 157, 323, 569, 582, 588
MboI	GATC	6 cut(s)	3, 155, 321, 567, 580, 586
MboII	GAAGA	7 cut(s)	43, 271, 316, 356, 470, 530, 554
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	3 cut(s)	58, 170, 251
MnlI	CCTC	4 cut(s)	288, 355, 489, 560
MseI	TTAA	4 cut(s)	183, 285, 420, 592
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	2 cut(s)	233, 544
MspR9I	CCNGG	1 cut(s)	544
Mva1269I	GAATGC	1 cut(s)	29
MvnI	CGCG	1 cut(s)	530
NciI	CCSGG	1 cut(s)	544
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	6 cut(s)	3, 155, 321, 567, 580, 586
NlaIV	GGNNCC	2 cut(s)	390, 548
NmuCI	GTSAC	2 cut(s)	64, 379
PaeR7I	CTCGAG	1 cut(s)	159
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	399, 535
PkrI	GCNGC	1 cut(s)	249
PspFI	CCCAGC	2 cut(s)	113, 220
PspN4I	GGNNCC	2 cut(s)	390, 548
PsuI	RGATCY	1 cut(s)	155
SaqAI	TTAA	4 cut(s)	183, 285, 420, 592
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	6 cut(s)	3, 155, 321, 567, 580, 586
ScrFI	CCNGG	1 cut(s)	544
SetI	ASST	5 cut(s)	226, 285, 394, 468, 491
SfaNI	GCATC	1 cut(s)	483
Sfr274I	CTCGAG	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	159
SmlI	CTYRAG	3 cut(s)	159, 182, 484
SmoI	CTYRAG	3 cut(s)	159, 182, 484
Sse9I	AATT	3 cut(s)	58, 170, 251
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	4 cut(s)	90, 266, 385, 432
TaqI	TCGA	3 cut(s)	6, 160, 188
TasI	AATT	3 cut(s)	58, 170, 251
TfiI	GAWTC	2 cut(s)	399, 535
Tru1I	TTAA	4 cut(s)	183, 285, 420, 592
Tru9I	TTAA	4 cut(s)	183, 285, 420, 592
TscAI	CASTG	3 cut(s)	144, 316, 501
TseFI	GTSAC	2 cut(s)	64, 379
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	2 cut(s)	64, 379
TspDTI	ATGAA	2 cut(s)	43, 216
TspRI	CASTG	3 cut(s)	144, 316, 501
Vha464I	CTTAAG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.