Rw6G040510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006181
Physical Location & Seq
Reverse (-)
64286860 .. 64287855
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040510.1

Sequence Viewer

Length: 600 bp
ATGTGTCAGATACGTGTTTGTCATGTTTTGATTACCTCTCTCTACATTGTCTGGATTGTTATCGGTGGTTCGAGTTTAAGCCATGGAAGCCTGATAGACAAGAAGGTTCTGAATGTTGGGGAAGAGCTATGGAGGGAGACTCTGCCACTGCGTATGGGTTCGCGGCTTTACCGGCTTCAAGGGATCAAGCCTGATACTTGGTATGAAGTCAAGATATCATATCCAGCTTCTATACCTGCTAGCTTTTCCATACAACTCAAGAGAGGGGACTTGGAATTGCCTTTGAATGGGAACAGAAGATTACTGAACACAGAAAAGCTGATTTTCAAGAGCGAAAATGATGGCTCGAATGATCAGGGTGGCATGTATGTGCTGGTGTCGGTGGAGCCTGAGGGGGTTGTTGCCATACCAAATGTGCAGGAGAGGGAGTACATCATTTTCAACATAGTTTGTGATGAACTATTGCTGGGGATTCCTCGTCAAGCTTGGTGGGTTGTAGGCTTTGTGGTGGTGTGTTTGGTTTTGGCCTTCATCATACCCTCATTTCTTCCACCCTTTTTGTTACGAGCACTCGATCAGAATGCTTCGAAAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.41

Weight (kDa)

6.14

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 244
AccII CGCG 1 cut(s) 163
AciI CCGC 1 cut(s) 163
AclWI GGATC 1 cut(s) 191
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 4 cut(s) 179, 286, 328, 442
AluBI AGCT 5 cut(s) 127, 227, 243, 319, 485
AluI AGCT 5 cut(s) 127, 227, 243, 319, 485
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 191
AoxI GGCC 1 cut(s) 525
AsuII TTCGAA 1 cut(s) 587
AsuNHI GCTAGC 1 cut(s) 239
AxyI CCTNAGG 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 571
BccI CCATC 1 cut(s) 335
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 387
BmtI GCTAGC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 124, 156
Bpu14I TTCGAA 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse118I RCCGGY 1 cut(s) 171
Bse21I CCTNAGG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 381
BseYI CCCAGC 1 cut(s) 466
BsgI GTGCAG 1 cut(s) 437
Bsh1236I CGCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 527
BsiHKAI GWGCWC 1 cut(s) 571
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 527
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 3 cut(s) 183, 352, 574
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 1 cut(s) 163
BspANI GGCC 1 cut(s) 527
BspCNI CTCAG 1 cut(s) 382
BspFNI CGCG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 387
BspMI ACCTGC 1 cut(s) 244
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 117
BspT104I TTCGAA 1 cut(s) 587
BsrFI RCCGGY 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 3 cut(s) 183, 352, 574
BssT1I CCWWGG 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 163
BstKTI GATC 3 cut(s) 186, 355, 577
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 3 cut(s) 183, 352, 574
BstMWI GCNNNNNNNGC 2 cut(s) 87, 172
BstNSI RCATGY 1 cut(s) 367
BstUI CGCG 1 cut(s) 163
Bsu36I CCTNAGG 1 cut(s) 390
BsuRI GGCC 1 cut(s) 527
BtgI CCRYGG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 171
Csp6I GTAC 1 cut(s) 430
CspCI CAANNNNNGTGG 4 cut(s) 470, 505, 540, 575
CviAII CATG 3 cut(s) 23, 83, 364
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 1 cut(s) 390
DpnI GATC 3 cut(s) 185, 354, 576
DpnII GATC 3 cut(s) 183, 352, 574
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 82
Eco32I GATATC 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 390
EcoRV GATATC 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 3 cut(s) 26, 86, 367
FaqI GGGAC 1 cut(s) 281
FatI CATG 3 cut(s) 22, 82, 363
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 1 cut(s) 240
GluI GCNGC 1 cut(s) 164
GsaI CCCAGC 1 cut(s) 470
HaeIII GGCC 1 cut(s) 527
HapII CCGG 1 cut(s) 172
Hin1II CATG 3 cut(s) 26, 86, 367
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 3 cut(s) 139, 472, 593
HpaII CCGG 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 9, 111, 579
Hpy188III TCNNGA 5 cut(s) 52, 211, 259, 328, 597
HpyAV CCTTC 2 cut(s) 97, 538
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 172
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 3 cut(s) 26, 86, 367
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 3 cut(s) 183, 352, 574
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 385
MaeI CTAG 1 cut(s) 240
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 561
MalI GATC 3 cut(s) 185, 354, 576
MboI GATC 3 cut(s) 183, 352, 574
MboII GAAGA 3 cut(s) 134, 309, 539
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 1 cut(s) 275
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 7 cut(s) 46, 126, 257, 385, 417, 486, 550
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 586
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 87, 172
NcoI CCATGG 1 cut(s) 82
NdeII GATC 3 cut(s) 183, 352, 574
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 3 cut(s) 26, 86, 367
NlaIV GGNNCC 1 cut(s) 387
NspI RCATGY 1 cut(s) 367
NspV TTCGAA 1 cut(s) 587
PciSI GCTCTTC 1 cut(s) 117
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 472, 593
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 387
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 368
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 3 cut(s) 183, 352, 574
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 571
SetI ASST 9 cut(s) 16, 38, 108, 129, 229, 238, 245, 321, 487
SfuI TTCGAA 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 275
SsiI CCGC 1 cut(s) 163
SspMI CTAG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 82
TaiI ACGT 1 cut(s) 16
TaqI TCGA 4 cut(s) 71, 347, 573, 587
TasI AATT 1 cut(s) 275
TatI WGTACW 1 cut(s) 429
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 2 cut(s) 472, 593
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 219, 471, 520
TspRI CASTG 1 cut(s) 153
XceI RCATGY 1 cut(s) 367
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.