Rh6AG464800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006181
Physical Location & Seq
Reverse (-)
64706616 .. 64707391
776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG464800.1

Sequence Viewer

Length: 525 bp
ATGCCACACCCGCCGGAGAAATCCAAACCACTTGCTGCAAGGAAGAGGACTATCCCAGCCGGGACTAGGACCGGACTAAACAGCACTATAACTGGGCTGGCCAAGATCAGGGTCATCACTGTCCCGGTTAAAGTTAACCCGGCCAAGACCAAGAAAGTGGCACCGATTGCTCCAGTGGTCAAGACCTTGGCAGTGCTGGTCCGGTCGCGTGAGGCCACTGACTCATTGGGCTTCTGGGAAGAGGCGAATGGCCTGATGTTGATCATGGCTACTGCGACTGAAAAGAATGAAGAAGAGTCGTGGAATCGAACAAGTCGTATTTGTAGGAGAAGAACGGTCGGTGGTGATGATCTTGTCGTGTTTAGTGTGGCTCTATCGGTGGTGGTGGGTTATGAGTTGATGTTCATCTGGAGTATAACACGTCGCTACGAGAGAATGGGTGCAAGAACAGGTGGCTGCCTACATCCTAGAATTCACATTAACAACGGATTCTTCACAGTTTTCCCTGTACTTGCAATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.18

Weight (kDa)

10.57

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 160
AccII CGCG 1 cut(s) 208
AciI CCGC 1 cut(s) 11
AcoI YGGCCR 2 cut(s) 99, 141
AcsI RAATTY 1 cut(s) 471
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 2 cut(s) 66, 108
AflIII ACRYGT 1 cut(s) 419
AjiI CACGTC 1 cut(s) 422
AoxI GGCC 4 cut(s) 99, 141, 213, 250
ApeKI GCWGC 2 cut(s) 35, 456
ApoI RAATTY 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 69, 199
AsuC2I CCSGG 3 cut(s) 61, 125, 140
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 2 cut(s) 69, 199
BalI TGGCCA 1 cut(s) 101
BanI GGYRCC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 22, 443
BclI TGATCA 1 cut(s) 261
BcnI CCSGG 3 cut(s) 61, 125, 140
BfaI CTAG 2 cut(s) 66, 468
BisI GCNGC 2 cut(s) 36, 457
BlsI GCNGC 2 cut(s) 37, 458
Bme1390I CCNGG 3 cut(s) 61, 125, 140
Bme18I GGWCC 2 cut(s) 69, 199
BmgBI CACGTC 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 69, 199
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 3 cut(s) 61, 125, 140
BmrI ACTGGG 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 102
BpmI CTGGAG 2 cut(s) 156, 430
BpuMI CCSGG 3 cut(s) 61, 125, 140
BsaBI GATNNNNATC 2 cut(s) 260, 404
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 2 cut(s) 71, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 108
Bse1I ACTGG 2 cut(s) 97, 173
Bse8I GATNNNNATC 2 cut(s) 260, 404
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 2 cut(s) 260, 404
BseLI CCNNNNNNNGG 2 cut(s) 66, 108
BseNI ACTGG 2 cut(s) 97, 173
BseXI GCAGC 2 cut(s) 22, 443
BseYI CCCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 208
Bsh1285I CGRYCG 2 cut(s) 206, 339
BshFI GGCC 4 cut(s) 101, 143, 215, 252
BshNI GGYRCC 1 cut(s) 160
BsiEI CGRYCG 2 cut(s) 206, 339
BsiSI CCGG 6 cut(s) 14, 60, 72, 125, 140, 202
BslFI GGGAC 2 cut(s) 76, 107
BslI CCNNNNNNNGG 2 cut(s) 66, 108
BsmFI GGGAC 2 cut(s) 76, 107
BsnI GGCC 4 cut(s) 101, 143, 215, 252
Bsp143I GATC 3 cut(s) 105, 261, 349
BspACI CCGC 1 cut(s) 11
BspANI GGCC 4 cut(s) 101, 143, 215, 252
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 160
BsrI ACTGG 2 cut(s) 97, 173
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 3 cut(s) 105, 261, 349
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 3 cut(s) 121, 337, 499
Bst6I CTCTTC 3 cut(s) 38, 234, 288
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 1 cut(s) 208
BstKTI GATC 3 cut(s) 108, 264, 352
BstMBI GATC 3 cut(s) 105, 261, 349
BstMCI CGRYCG 2 cut(s) 206, 339
BstMWI GCNNNNNNNGC 2 cut(s) 10, 167
BstSCI CCNGG 3 cut(s) 59, 123, 138
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 22, 443
BstXI CCANNNNNNTGG 1 cut(s) 157
BsuRI GGCC 4 cut(s) 101, 143, 215, 252
BtrI CACGTC 1 cut(s) 422
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 4 cut(s) 117, 180, 198, 216
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 69, 199
Csp6I GTAC 1 cut(s) 509
CviAII CATG 1 cut(s) 265
CviQI GTAC 1 cut(s) 509
DpnI GATC 3 cut(s) 107, 263, 351
DpnII GATC 3 cut(s) 105, 261, 349
EaeI YGGCCR 2 cut(s) 99, 141
Eam1104I CTCTTC 3 cut(s) 38, 234, 288
EarI CTCTTC 3 cut(s) 38, 234, 288
Eco130I CCWWGG 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 69, 199
EcoRI GAATTC 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 268
FaiI YATR 4 cut(s) 89, 266, 393, 416
FaqI GGGAC 2 cut(s) 76, 107
FatI CATG 1 cut(s) 264
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 36, 457
FokI GGATG 1 cut(s) 450
Fsp4HI GCNGC 2 cut(s) 36, 457
FspBI CTAG 2 cut(s) 66, 468
GluI GCNGC 2 cut(s) 36, 457
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 2 cut(s) 156, 430
HaeIII GGCC 4 cut(s) 101, 143, 215, 252
HapII CCGG 6 cut(s) 14, 60, 72, 125, 140, 202
Hin1II CATG 1 cut(s) 268
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 221, 296, 304, 489
HpaI GTTAAC 1 cut(s) 136
HpaII CCGG 6 cut(s) 14, 60, 72, 125, 140, 202
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 181, 409
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 426
HpyCH4III ACNGT 3 cut(s) 121, 337, 499
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 3 cut(s) 38, 443, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 167
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 261
KspAI GTTAAC 1 cut(s) 136
Kzo9I GATC 3 cut(s) 105, 261, 349
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 2 cut(s) 22, 443
MaeI CTAG 2 cut(s) 66, 468
MaeII ACGT 1 cut(s) 421
MalI GATC 3 cut(s) 107, 263, 351
MboI GATC 3 cut(s) 105, 261, 349
MboII GAAGA 6 cut(s) 55, 251, 302, 305, 342, 484
MfeI CAATTG 1 cut(s) 516
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 2 cut(s) 471, 516
MluNI TGGCCA 1 cut(s) 101
MlyI GAGTC 2 cut(s) 215, 305
MnlI CCTC 3 cut(s) 39, 205, 235
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MseI TTAA 3 cut(s) 129, 135, 480
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 6 cut(s) 14, 60, 72, 125, 140, 202
MspR9I CCNGG 3 cut(s) 61, 125, 140
MunI CAATTG 1 cut(s) 516
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 10, 167
NciI CCSGG 3 cut(s) 61, 125, 140
NdeII GATC 3 cut(s) 105, 261, 349
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PfeI GAWTC 2 cut(s) 304, 489
PkrI GCNGC 2 cut(s) 37, 458
PleI GAGTC 2 cut(s) 215, 304
PpsI GAGTC 2 cut(s) 215, 304
PspFI CCCAGC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 2 cut(s) 69, 199
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SaqAI TTAA 3 cut(s) 129, 135, 480
SatI GCNGC 2 cut(s) 36, 457
Sau3AI GATC 3 cut(s) 105, 261, 349
Sau96I GGNCC 2 cut(s) 69, 199
SchI GAGTC 2 cut(s) 215, 305
ScrFI CCNGG 3 cut(s) 61, 125, 140
SetI ASST 3 cut(s) 188, 424, 454
SinI GGWCC 2 cut(s) 69, 199
Sse9I AATT 2 cut(s) 471, 516
SsiI CCGC 1 cut(s) 11
SspMI CTAG 2 cut(s) 66, 468
StyD4I CCNGG 3 cut(s) 59, 123, 138
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 3 cut(s) 121, 337, 499
TaiI ACGT 1 cut(s) 424
TaqI TCGA 1 cut(s) 307
TasI AATT 2 cut(s) 471, 516
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 2 cut(s) 304, 489
Tru1I TTAA 3 cut(s) 129, 135, 480
Tru9I TTAA 3 cut(s) 129, 135, 480
TscAI CASTG 4 cut(s) 124, 180, 198, 223
TseI GCWGC 2 cut(s) 35, 456
TspDTI ATGAA 2 cut(s) 303, 394
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 4 cut(s) 124, 180, 198, 223
VpaK11BI GGWCC 2 cut(s) 69, 199
XapI RAATTY 1 cut(s) 471
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XspI CTAG 2 cut(s) 66, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.