Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006181

Physical Location & Seq

Genomic Coordinates Reverse (-)

64684453 .. 64685208

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG479300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTGTCAGATACGTGTTTGTAATGTTTTGATTACCACTCTCTACATTGTCTGGATTGTTATCGGTGGTTCGAGTTTAAGCCATGGAAGCCTGATAGACAACAAGGTTCTGAATGTTGGGGAAGAGCTATGGAGGGAGACTCTGCCACTACGTATGGGTTCGCGGCTTTACCGGCTTCAAGGGATCAAGCCTGATACTTGGTATGAAGTGAAAATATCATATCCAGCTTCTATACCTGCTAGCTTTTCCATACAACTCAAGAGAGGGGACTTGGAATTGCCTTTGAATGGGAACAGAAGATTACTGAACACAGAAAAGCTGATTTTCAAGAGCGAAAATGATGGCTCGAATGATCAGGGTGGCATGTATGTGTTGGTGTCGGTGGAGCCTGAGGGGGTTGTTGCCATACCAAATGTGCAGGAGAGGGAGTACATCATTTTCAACATAGGTAATGTGCATACACTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.57

Weight (kDa)

6.12

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20890 AT1G20890 AT1G76480 AT1G76480
fragaria_vesca	FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150
malus_domestica	MD08G1109000.v1.1
prunus_persica	Prupe.1G443600_v2.0.a1 Prupe.1G443800_v2.0.a1
pyrus_communis	pycom08g09080
rosa_chinensis	RchiOBHm_Chr6g0306801
rosa_laevigata	RLG00000010765
rosa_multiflora	Rmu_sc0009381.1_g000002
rosa_rugosa	Rorug06G0353000 Rorug06G0353100 Rorug06G0353100 Rorug06G0353100
rosa_samantha	Rh6AG464800 Rh6AG464900 Rh6BG435900 Rh6CG479300 Rh6DG466200
rosa_wichuraiana	Rw6G040510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccII	CGCG	1 cut(s)	163
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	4 cut(s)	179, 286, 328, 442
AluBI	AGCT	4 cut(s)	127, 227, 243, 319
AluI	AGCT	4 cut(s)	127, 227, 243, 319
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	191
AsuNHI	GCTAGC	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	390
BccI	CCATC	1 cut(s)	335
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	387
BmtI	GCTAGC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BpuEI	CTTGAG	1 cut(s)	242
BsaAI	YACGTR	2 cut(s)	14, 152
BsaBI	GATNNNNATC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	171
Bse21I	CCTNAGG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	381
BsgI	GTGCAG	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	183, 352
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	191
BspQI	GCTCTTC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	2 cut(s)	183, 352
BssT1I	CCWWGG	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	117
BstBAI	YACGTR	2 cut(s)	14, 152
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	163
BstKTI	GATC	2 cut(s)	186, 355
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	183, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 172
BstNSI	RCATGY	1 cut(s)	367
BstSNI	TACGTA	1 cut(s)	152
BstUI	CGCG	1 cut(s)	163
Bsu36I	CCTNAGG	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	2 cut(s)	83, 364
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	185, 354
DpnII	GATC	2 cut(s)	183, 352
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco105I	TACGTA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	82
Eco81I	CCTNAGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	86, 367
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	82, 363
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	164
HapII	CCGG	1 cut(s)	172
Hin1II	CATG	2 cut(s)	86, 367
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	9, 111
Hpy188III	TCNNGA	3 cut(s)	52, 259, 328
HpyCH4IV	ACGT	2 cut(s)	13, 151
HpyCH4V	TGCA	2 cut(s)	418, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 172
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	2 cut(s)	13, 151
Hsp92II	CATG	2 cut(s)	86, 367
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	183, 352
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	9 cut(s)	37, 104, 185, 204, 237, 249, 341, 402, 404
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	13, 151
MalI	GATC	2 cut(s)	185, 354
MboI	GATC	2 cut(s)	183, 352
MboII	GAAGA	2 cut(s)	134, 309
MluCI	AATT	2 cut(s)	275, 466
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	4 cut(s)	126, 257, 385, 417
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	87, 172
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	2 cut(s)	183, 352
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	2 cut(s)	86, 367
NlaIV	GGNNCC	1 cut(s)	387
NspI	RCATGY	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	2 cut(s)	14, 152
PspN4I	GGNNCC	1 cut(s)	387
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	2 cut(s)	183, 352
SchI	GAGTC	1 cut(s)	133
SetI	ASST	9 cut(s)	16, 108, 129, 154, 229, 238, 245, 321, 451
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SnaBI	TACGTA	1 cut(s)	152
Sse9I	AATT	2 cut(s)	275, 466
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	82
TaiI	ACGT	2 cut(s)	16, 154
TaqI	TCGA	2 cut(s)	71, 347
TasI	AATT	2 cut(s)	275, 466
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	219
XceI	RCATGY	1 cut(s)	367
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.