Prupe.1G443800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
37621002 .. 37621562
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G443800.1

Sequence Viewer

Length: 306 bp
ATGTACTTATACATCAATGTCAACGTTGTTACTGCCGCCACGCCGCACCCGCCAGAGAAAACAAGGCCGGCTGCTGTCAGGAACACGACTATCCCAGCCGGGACTAGGATTGGACTAAACACCACCAGCACTGGGGTGGCCATGATCAGGGCCATCACTGTCCCAGTTAACGTTAACCCGGACAGGACTAAAAGGGTTGTCCCAGCTGCGCCTGCTGTCAAGAACTTGCCAGTCAGGCGAAGGGAGGATGGTGGGGCTGCTGACTGGTCGTGGTCCTGGAGCTTCAGGGTGACGTGTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.99

Weight (kDa)

10.84

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 36, 44, 50
AclI AACGTT 2 cut(s) 24, 171
AcoI YGGCCR 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 268
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 105, 132, 147
AflIII ACRYGT 1 cut(s) 293
AjiI CACGTC 1 cut(s) 294
AjnI CCWGG 1 cut(s) 275
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 2 cut(s) 206, 282
AluI AGCT 2 cut(s) 206, 282
AoxI GGCC 3 cut(s) 65, 138, 150
ApeKI GCWGC 3 cut(s) 71, 206, 257
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 150, 273
AsuC2I CCSGG 2 cut(s) 100, 179
AsuHPI GGTGA 1 cut(s) 301
AvaII GGWCC 1 cut(s) 273
BalI TGGCCA 1 cut(s) 140
BbvI GCAGC 3 cut(s) 58, 193, 244
BccI CCATC 2 cut(s) 161, 242
BciT130I CCWGG 1 cut(s) 277
BclI TGATCA 1 cut(s) 144
BcnI CCSGG 2 cut(s) 100, 179
BfaI CTAG 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 235
BisI GCNGC 5 cut(s) 36, 44, 72, 207, 258
BlsI GCNGC 5 cut(s) 37, 45, 73, 208, 259
Bme1390I CCNGG 3 cut(s) 100, 179, 277
Bme18I GGWCC 1 cut(s) 273
BmgBI CACGTC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 150, 273
BmrFI CCNGG 3 cut(s) 100, 179, 277
BmrI ACTGGG 2 cut(s) 141, 158
BmuI ACTGGG 2 cut(s) 141, 158
BpmI CTGGAG 1 cut(s) 298
BpuMI CCSGG 2 cut(s) 100, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 132, 147
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 4 cut(s) 136, 164, 230, 269
BseBI CCWGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 3 cut(s) 105, 132, 147
BseNI ACTGG 4 cut(s) 136, 164, 230, 269
BseXI GCAGC 3 cut(s) 58, 193, 244
BseYI CCCAGC 2 cut(s) 94, 202
BshFI GGCC 3 cut(s) 67, 140, 152
BsiSI CCGG 3 cut(s) 68, 99, 179
BslFI GGGAC 3 cut(s) 115, 146, 185
BslI CCNNNNNNNGG 3 cut(s) 105, 132, 147
BsmFI GGGAC 3 cut(s) 115, 146, 185
BsnI GGCC 3 cut(s) 67, 140, 152
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 3 cut(s) 36, 44, 50
BspANI GGCC 3 cut(s) 67, 140, 152
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 4 cut(s) 136, 164, 230, 269
BssAI RCCGGY 1 cut(s) 67
BssMI GATC 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 69, 213
BstF5I GGATG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 49, 212, 235
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 3 cut(s) 98, 177, 275
BstV1I GCAGC 3 cut(s) 58, 193, 244
BsuRI GGCC 3 cut(s) 67, 140, 152
BtrI CACGTC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 129, 156
Cac8I GCNNGC 2 cut(s) 69, 213
CfoI GCGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 150, 273
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 142
CviJI RGCY 8 cut(s) 67, 71, 98, 140, 152, 206, 257, 282
CviKI_1 RGCY 8 cut(s) 67, 71, 98, 140, 152, 206, 257, 282
CviQI GTAC 1 cut(s) 4
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 275
FaeI CATG 1 cut(s) 145
FaiI YATR 2 cut(s) 10, 143
FaqI GGGAC 3 cut(s) 115, 146, 185
FatI CATG 1 cut(s) 141
FauI CCCGC 1 cut(s) 57
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 5 cut(s) 36, 44, 72, 207, 258
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 5 cut(s) 36, 44, 72, 207, 258
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 210
GluI GCNGC 5 cut(s) 36, 44, 72, 207, 258
GsaI CCCAGC 2 cut(s) 98, 206
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 3 cut(s) 67, 140, 152
HapII CCGG 3 cut(s) 68, 99, 179
HhaI GCGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 3 cut(s) 22, 169, 175
HindII GTYRAC 3 cut(s) 22, 169, 175
HpaI GTTAAC 2 cut(s) 169, 175
HpaII CCGG 3 cut(s) 68, 99, 179
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 3 cut(s) 22, 169, 175
Hpy188III TCNNGA 3 cut(s) 79, 220, 299
Hpy8I GTNNAC 3 cut(s) 22, 169, 175
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 3 cut(s) 24, 171, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 212, 235
HpySE526I ACGT 3 cut(s) 24, 171, 293
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 1 cut(s) 209
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 144
KspAI GTTAAC 2 cut(s) 169, 175
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 279
Lsp1109I GCAGC 3 cut(s) 58, 193, 244
MaeI CTAG 1 cut(s) 105
MaeII ACGT 3 cut(s) 24, 171, 293
MaeIII GTNAC 2 cut(s) 28, 289
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MlsI TGGCCA 1 cut(s) 140
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 1 cut(s) 238
Mox20I TGGCCA 1 cut(s) 140
MroNI GCCGGC 1 cut(s) 67
MscI TGGCCA 1 cut(s) 140
MseI TTAA 2 cut(s) 168, 174
MslI CAYNNNNRTG 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 3 cut(s) 68, 99, 179
MspR9I CCNGG 3 cut(s) 100, 179, 277
MvaI CCWGG 1 cut(s) 277
MwoI GCNNNNNNNGC 3 cut(s) 49, 212, 235
NaeI GCCGGC 1 cut(s) 69
NciI CCSGG 2 cut(s) 100, 179
NdeII GATC 1 cut(s) 144
NgoMIV GCCGGC 1 cut(s) 67
NlaIII CATG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 134
PdiI GCCGGC 1 cut(s) 69
PfoI TCCNGGA 1 cut(s) 275
PkrI GCNGC 5 cut(s) 37, 45, 73, 208, 259
Psp1406I AACGTT 2 cut(s) 24, 171
Psp6I CCWGG 1 cut(s) 275
PspFI CCCAGC 2 cut(s) 94, 202
PspGI CCWGG 1 cut(s) 275
PspPI GGNCC 2 cut(s) 150, 273
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 2 cut(s) 168, 174
SatI GCNGC 5 cut(s) 36, 44, 72, 207, 258
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 2 cut(s) 150, 273
ScrFI CCNGG 3 cut(s) 100, 179, 277
SetI ASST 5 cut(s) 27, 174, 208, 284, 296
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 134
SsiI CCGC 3 cut(s) 36, 44, 50
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 98, 177, 275
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 3 cut(s) 27, 174, 296
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 38, 46
Tru1I TTAA 2 cut(s) 168, 174
Tru9I TTAA 2 cut(s) 168, 174
TscAI CASTG 2 cut(s) 136, 163
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 3 cut(s) 71, 206, 257
Tsp45I GTSAC 1 cut(s) 289
TspRI CASTG 2 cut(s) 136, 163
VpaK11BI GGWCC 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.