Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006181

Physical Location & Seq

Genomic Coordinates Reverse (-)

64707884 .. 64709142

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG464900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTGTCACCGCCTTATTGGCTGTTGGAGTTGCTCAAGAAAAAATGGAGTCGGAGACCGCGAGGTTCTAATCGACTATTGCTCCGATTGGTTGCTTCCAAAAGCCAAACAAAGAGAGGTTGAAGAAATCGAACAACATTTTTGCTCCACAATGTGTCAGATTCGTGTTTGTAATGTTTTGATTACCACTCTCTACATTGTCTGGATTGTTATCGGTGGTTCGAGTTTAAGCCATGGAAGCCTGATAGACAAGAAGGTTCTGAATGTTGGGGAAGAGCTATGGAGGGAGACTCTGCCACTACGTATGGGTTCGCGGCTTTACCGGCTTCAAGGGATCAAGCCTCATACTTGGTATGAAGTGAAGATATCATATCCAGCTTCTATACCTGCTAGCTTTTCCATACAACTCAAGAGAGGGGACTTGGAATTGCCTTTGAATGGGAACAGAAGATTACTGAACACAGAAAAGCTGATTTTCAAGAGCGAAAATGATGGCTCGAATGATCAGGGTGGCATGTATGTGCTGGTGTCGGTGGAGCCTGAGGGGGTTGTTGCCATACCAAATGTGCAGGAGAGGGAGTACATCATTTTCAACATAGGTAATGTGCATACACTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

23.46

Weight (kDa)

6.95

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20890 AT1G20890 AT1G76480 AT1G76480
fragaria_vesca	FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150
malus_domestica	MD08G1109000.v1.1
prunus_persica	Prupe.1G443600_v2.0.a1 Prupe.1G443800_v2.0.a1
pyrus_communis	pycom08g09080
rosa_chinensis	RchiOBHm_Chr6g0306801
rosa_laevigata	RLG00000010765
rosa_multiflora	Rmu_sc0009381.1_g000002
rosa_rugosa	Rorug06G0353000 Rorug06G0353100 Rorug06G0353100 Rorug06G0353100
rosa_samantha	Rh6AG464800 Rh6AG464900 Rh6BG435900 Rh6CG479300 Rh6DG466200
rosa_wichuraiana	Rw6G040510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccII	CGCG	2 cut(s)	60, 313
AciI	CCGC	3 cut(s)	10, 58, 313
AclWI	GGATC	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	5 cut(s)	122, 329, 436, 478, 592
AluBI	AGCT	4 cut(s)	277, 377, 393, 469
AluI	AGCT	4 cut(s)	277, 377, 393, 469
Alw26I	GTCTC	2 cut(s)	48, 281
AlwI	GGATC	1 cut(s)	341
AsuNHI	GCTAGC	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	540
BccI	CCATC	1 cut(s)	485
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	48, 281
BfaI	CTAG	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	394
BglI	GCCNNNNNGGC	1 cut(s)	18
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	537
BmtI	GCTAGC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpuEI	CTTGAG	2 cut(s)	19, 392
BsaAI	YACGTR	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	232
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 563, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	321
Bse21I	CCTNAGG	1 cut(s)	540
Bse8I	GATNNNNATC	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	1 cut(s)	531
BsgI	GTGCAG	1 cut(s)	587
Bsh1236I	CGCG	2 cut(s)	60, 313
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	2 cut(s)	48, 281
BsmFI	GGGAC	1 cut(s)	431
Bso31I	GGTCTC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	333, 502
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	3 cut(s)	10, 58, 313
BspCNI	CTCAG	1 cut(s)	532
BspFNI	CGCG	2 cut(s)	60, 313
BspLI	GGNNCC	1 cut(s)	537
BspMI	ACCTGC	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	321
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	2 cut(s)	333, 502
BssT1I	CCWWGG	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	232
BstFNI	CGCG	2 cut(s)	60, 313
BstKTI	GATC	2 cut(s)	336, 505
BstMAI	GTCTC	2 cut(s)	48, 281
BstMBI	GATC	2 cut(s)	333, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 237, 322
BstNSI	RCATGY	1 cut(s)	517
BstSNI	TACGTA	1 cut(s)	302
BstUI	CGCG	2 cut(s)	60, 313
Bsu36I	CCTNAGG	1 cut(s)	540
BtgI	CCRYGG	1 cut(s)	232
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	2 cut(s)	233, 514
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	2 cut(s)	335, 504
DpnII	GATC	2 cut(s)	333, 502
DraIII	CACNNNGTG	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco105I	TACGTA	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	366
Eco81I	CCTNAGG	1 cut(s)	540
EcoRV	GATATC	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	236, 517
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	2 cut(s)	232, 513
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	1 cut(s)	314
HapII	CCGG	1 cut(s)	322
Hin1II	CATG	2 cut(s)	236, 517
HinfI	GANTC	3 cut(s)	48, 160, 289
HpaII	CCGG	1 cut(s)	322
Hpy188I	TCNGA	4 cut(s)	53, 85, 159, 261
Hpy188III	TCNNGA	4 cut(s)	36, 202, 409, 478
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	568, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 237, 322
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	2 cut(s)	236, 517
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	333, 502
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	3 cut(s)	86, 149, 535
LpnPI	CCDG	9 cut(s)	187, 254, 335, 387, 399, 491, 509, 552, 554
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	2 cut(s)	335, 504
MboI	GATC	2 cut(s)	333, 502
MboII	GAAGA	4 cut(s)	134, 284, 373, 459
MluCI	AATT	2 cut(s)	425, 616
MlyI	GAGTC	2 cut(s)	57, 283
MmeI	TCCRAC	2 cut(s)	5, 31
MnlI	CCTC	7 cut(s)	55, 109, 276, 351, 407, 535, 567
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	518
MspI	CCGG	1 cut(s)	322
MvnI	CGCG	2 cut(s)	60, 313
MwoI	GCNNNNNNNGC	3 cut(s)	18, 237, 322
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	2 cut(s)	333, 502
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	2 cut(s)	236, 517
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	2 cut(s)	56, 283
PpsI	GAGTC	2 cut(s)	56, 283
Ppu21I	YACGTR	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	537
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
RseI	CAYNNNNRTG	1 cut(s)	518
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	333, 502
SchI	GAGTC	2 cut(s)	57, 283
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	2 cut(s)	34, 407
SmoI	CTYRAG	2 cut(s)	34, 407
SnaBI	TACGTA	1 cut(s)	302
Sse9I	AATT	2 cut(s)	425, 616
SsiI	CCGC	3 cut(s)	10, 58, 313
SspMI	CTAG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	232
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	4 cut(s)	72, 129, 221, 497
TasI	AATT	2 cut(s)	425, 616
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TseFI	GTSAC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	369
XceI	RCATGY	1 cut(s)	517
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.