RLG00000010765

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
4206821 .. 4209232
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010765

Sequence Viewer

Length: 1125 bp
ATGTGTCACCGCCTTATTGGCTGGTTCAGTCAAAACGGTGCGTTTTGTGCTCCGTTTAATAATAAGTGCGCGATCATTGTTGAGCTAGTTGCTCTCGCTGATAGAAATCGAAAAAGTGGACTCGGAGACCGGAAGGTTCTGATCGATTGGTTGCTCCAAAAGCCAAACAAGGAGAGAGTTGTAGTGTTGGTTCAGGAAATTGAAGAACTGAGCGACTCGCATTCCTCCGCAATGTGTCAGATACGTGTTTGTAATGTTTTGATCACCACTCTCTACATTGTCTGCATTATTATCGGTGGTTCGAGTTTAAGCCATGGAAGCCCGATAGACAAGAAGGTTCTGAATGTAGGGGAAGAGCTGTGGAGGGAGACTCTGCCACTGCGAATGGGTTCGCGGCTTTACCGGCTTCAAGGGATCAAGCCTGATACTTGGTATGAAGTGAAGATATCATATCCAGCTTCTATACCTGCTAGCTTTTCCATACAACTCAAGAGAGGGGACTTGGAGTTACCACTGAATGGGAACAGAAGATTACTGAACACAGAAAAGCTGATCTTCAAGACCGAAAATGATGGCTCCAGCGATCAGGGTGGCATGTATGTGTTAGTGACTGTGGAGCCTGAGGGGGTTGTTGCCATACCAAATATGCAGGAGAGGGAGTACATCATTTTCAACATAGTTTGTGATGAATTATTGCTGGGGATTCCTCACCAAGCTTGTGCCATAATCGCCACCACGCCACACCCGCCGGAGAAAACCAAACCACTTGCTGCAAGGAAGAGGACTATCCCAGCCGGGCCTAGGACCGGACTAAACAGCACTATAACTGGGCTGGCCATCACTGTCCCGGTTAAAGTTAACCCGGACAAGACTAAGAAAGTGGCGCCGATTGCTCCAGTGGTCAAGACCTTGGCAGTGCTGGTCCGGTCGCGTGAGGCCACTGGCTCATTGGGCTTCTGGGAAGAGGCGAATGGCCTGATGTTGATCATGGCTACTGCGACTGAAAAGTATGAAGAAGAGTCGTGGAATCGAACAAGTCGTACTTGTAGGAGAAGAACGGTCGGTGGTGATGATCTTGTCGTGTTTTGTGTGGCTCGATTGGTGGTGGCATGGTGGGTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

375

Amino Acids

41.5

Weight (kDa)

8.95

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 475
AccB1I GGYRCC 1 cut(s) 883
AccB7I CCANNNNNTGG 1 cut(s) 518
AccII CGCG 3 cut(s) 71, 394, 931
AciI CCGC 4 cut(s) 10, 228, 394, 746
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 1 cut(s) 834
AcyI GRCGYC 1 cut(s) 884
AfaI GTAC 2 cut(s) 662, 1042
AfiI CCNNNNNNNGG 3 cut(s) 518, 801, 806
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 4 cut(s) 203, 410, 559, 673
AluBI AGCT 6 cut(s) 85, 358, 458, 474, 550, 716
AluI AGCT 6 cut(s) 85, 358, 458, 474, 550, 716
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 2 cut(s) 120, 362
AlwI GGATC 1 cut(s) 422
AoxI GGCC 4 cut(s) 797, 834, 936, 973
ApeKI GCWGC 1 cut(s) 770
Asp700I GAANNNNTTC 1 cut(s) 388
AspA2I CCTAGG 1 cut(s) 800
AspLEI GCGC 2 cut(s) 71, 886
AspS9I GGNCC 3 cut(s) 797, 804, 922
AsuC2I CCSGG 3 cut(s) 796, 848, 863
AsuHPI GGTGA 3 cut(s) 256, 701, 1079
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 2 cut(s) 804, 922
AvrII CCTAGG 1 cut(s) 800
AxyI CCTNAGG 1 cut(s) 621
BalI TGGCCA 1 cut(s) 836
BanI GGYRCC 1 cut(s) 883
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 757
BccI CCATC 2 cut(s) 566, 845
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BclI TGATCA 2 cut(s) 261, 984
BcnI CCSGG 3 cut(s) 796, 848, 863
BcoDI GTCTC 2 cut(s) 120, 362
BfaI CTAG 3 cut(s) 86, 471, 801
BfoI RGCGCY 1 cut(s) 887
BfuAI ACCTGC 1 cut(s) 475
BglI GCCNNNNNGGC 1 cut(s) 18
BisI GCNGC 2 cut(s) 395, 771
BlnI CCTAGG 1 cut(s) 800
BlsI GCNGC 2 cut(s) 396, 772
Bme1390I CCNGG 3 cut(s) 796, 848, 863
Bme18I GGWCC 2 cut(s) 804, 922
BmgT120I GGNCC 3 cut(s) 797, 804, 922
BmiI GGNNCC 3 cut(s) 577, 618, 885
BmrFI CCNGG 3 cut(s) 796, 848, 863
BmrI ACTGGG 1 cut(s) 837
BmtI GCTAGC 1 cut(s) 474
BmuI ACTGGG 1 cut(s) 837
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpmI CTGGAG 2 cut(s) 562, 879
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 3 cut(s) 796, 848, 863
Bsa29I ATCGAT 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 245
BsaBI GATNNNNATC 2 cut(s) 105, 983
BsaHI GRCGYC 1 cut(s) 884
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 3 cut(s) 313, 800, 909
BsaWI WCCGGW 3 cut(s) 129, 806, 924
BsaXI ACNNNNNCTCC 2 cut(s) 644, 674
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 801, 806
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 3 cut(s) 832, 896, 946
Bse21I CCTNAGG 1 cut(s) 621
Bse3DI GCAATG 1 cut(s) 237
Bse8I GATNNNNATC 2 cut(s) 105, 983
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 313, 800, 909
BseJI GATNNNNATC 2 cut(s) 105, 983
BseLI CCNNNNNNNGG 3 cut(s) 518, 801, 806
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 2 cut(s) 200, 612
BseNI ACTGG 3 cut(s) 832, 896, 946
BseXI GCAGC 1 cut(s) 757
BseYI CCCAGC 2 cut(s) 697, 790
Bsh1236I CGCG 3 cut(s) 71, 394, 931
Bsh1285I CGRYCG 2 cut(s) 929, 1062
BshFI GGCC 4 cut(s) 799, 836, 938, 975
BshNI GGYRCC 1 cut(s) 883
BshVI ATCGAT 1 cut(s) 144
BsiEI CGRYCG 2 cut(s) 929, 1062
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 8 cut(s) 130, 403, 749, 795, 807, 848, 863, 925
BslFI GGGAC 2 cut(s) 512, 830
BslI CCNNNNNNNGG 3 cut(s) 518, 801, 806
BsmAI GTCTC 2 cut(s) 120, 362
BsmFI GGGAC 2 cut(s) 512, 830
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 4 cut(s) 799, 836, 938, 975
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 8 cut(s) 72, 141, 261, 414, 552, 583, 984, 1072
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 4 cut(s) 10, 228, 394, 746
BspANI GGCC 4 cut(s) 799, 836, 938, 975
BspCNI CTCAG 2 cut(s) 201, 613
BspDI ATCGAT 1 cut(s) 144
BspFNI CGCG 3 cut(s) 71, 394, 931
BspLI GGNNCC 3 cut(s) 577, 618, 885
BspMI ACCTGC 1 cut(s) 475
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 1 cut(s) 422
BspQI GCTCTTC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 883
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 3 cut(s) 832, 896, 946
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 313, 800, 909
BssMI GATC 8 cut(s) 72, 141, 261, 414, 552, 583, 984, 1072
BssNI GRCGYC 1 cut(s) 884
BssT1I CCWWGG 3 cut(s) 313, 800, 909
Bst4CI ACNGT 4 cut(s) 38, 613, 844, 1060
Bst6I CTCTTC 4 cut(s) 348, 773, 957, 1011
BstACI GRCGYC 1 cut(s) 884
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 472, 834
BstDEI CTNAG 3 cut(s) 209, 621, 873
BstDSI CCRYGG 1 cut(s) 313
BstFNI CGCG 3 cut(s) 71, 394, 931
BstH2I RGCGCY 1 cut(s) 887
BstHHI GCGC 2 cut(s) 71, 886
BstKTI GATC 8 cut(s) 75, 144, 264, 417, 555, 586, 987, 1075
BstMAI GTCTC 2 cut(s) 120, 362
BstMBI GATC 8 cut(s) 72, 141, 261, 414, 552, 583, 984, 1072
BstMCI CGRYCG 2 cut(s) 929, 1062
BstMWI GCNNNNNNNGC 9 cut(s) 18, 47, 160, 318, 403, 728, 745, 890, 951
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 3 cut(s) 794, 846, 861
BstUI CGCG 3 cut(s) 71, 394, 931
BstV1I GCAGC 1 cut(s) 757
Bsu15I ATCGAT 1 cut(s) 144
Bsu36I CCTNAGG 1 cut(s) 621
BsuRI GGCC 4 cut(s) 799, 836, 938, 975
BsuTUI ATCGAT 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 313
BtsI GCAGTG 2 cut(s) 377, 921
BtsIMutI CAGTG 6 cut(s) 377, 512, 840, 903, 921, 939
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 2 cut(s) 472, 834
CfoI GCGC 2 cut(s) 71, 886
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 3 cut(s) 797, 804, 922
ClaI ATCGAT 1 cut(s) 144
Csp6I GTAC 2 cut(s) 661, 1041
CviAII CATG 5 cut(s) 314, 595, 988, 1110, 1122
CviQI GTAC 2 cut(s) 661, 1041
DdeI CTNAG 3 cut(s) 209, 621, 873
DinI GGCGCC 1 cut(s) 885
DpnI GATC 8 cut(s) 74, 143, 263, 416, 554, 585, 986, 1074
DpnII GATC 8 cut(s) 72, 141, 261, 414, 552, 583, 984, 1072
EaeI YGGCCR 1 cut(s) 834
Eam1104I CTCTTC 4 cut(s) 348, 773, 957, 1011
EarI CTCTTC 4 cut(s) 348, 773, 957, 1011
Eco130I CCWWGG 3 cut(s) 313, 800, 909
Eco31I GGTCTC 1 cut(s) 120
Eco32I GATATC 1 cut(s) 447
Eco47I GGWCC 2 cut(s) 804, 922
Eco81I CCTNAGG 1 cut(s) 621
EcoRV GATATC 1 cut(s) 447
EcoT14I CCWWGG 3 cut(s) 313, 800, 909
EgeI GGCGCC 1 cut(s) 885
EheI GGCGCC 1 cut(s) 885
ErhI CCWWGG 3 cut(s) 313, 800, 909
FaeI CATG 5 cut(s) 317, 598, 991, 1113, 1125
FalI AAGNNNNNCTT 4 cut(s) 539, 571, 1027, 1059
FaqI GGGAC 2 cut(s) 512, 830
FatI CATG 5 cut(s) 313, 594, 987, 1109, 1121
FauI CCCGC 1 cut(s) 753
FbaI TGATCA 2 cut(s) 261, 984
Fnu4HI GCNGC 2 cut(s) 395, 771
Fsp4HI GCNGC 2 cut(s) 395, 771
FspBI CTAG 3 cut(s) 86, 471, 801
GlaI GCGC 2 cut(s) 70, 885
GluI GCNGC 2 cut(s) 395, 771
GsaI CCCAGC 2 cut(s) 701, 794
GsuI CTGGAG 2 cut(s) 562, 879
HaeII RGCGCY 1 cut(s) 887
HaeIII GGCC 4 cut(s) 799, 836, 938, 975
HapII CCGG 8 cut(s) 130, 403, 749, 795, 807, 848, 863, 925
HhaI GCGC 2 cut(s) 71, 886
Hin1I GRCGYC 1 cut(s) 884
Hin1II CATG 5 cut(s) 317, 598, 991, 1113, 1125
Hin6I GCGC 2 cut(s) 69, 884
HinP1I GCGC 2 cut(s) 69, 884
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 6 cut(s) 120, 215, 370, 703, 1019, 1027
HpaI GTTAAC 1 cut(s) 859
HpaII CCGG 8 cut(s) 130, 403, 749, 795, 807, 848, 863, 925
HphI GGTGA 3 cut(s) 256, 701, 1079
Hpy166II GTNNAC 2 cut(s) 119, 859
Hpy188I TCNGA 4 cut(s) 125, 141, 240, 342
Hpy188III TCNNGA 4 cut(s) 194, 490, 559, 904
Hpy8I GTNNAC 2 cut(s) 119, 859
HpyAV CCTTC 2 cut(s) 127, 328
HpyCH4III ACNGT 4 cut(s) 38, 613, 844, 1060
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 4 cut(s) 285, 649, 773, 1121
HpyF10VI GCNNNNNNNGC 9 cut(s) 18, 47, 160, 318, 403, 728, 745, 890, 951
HpyF3I CTNAG 3 cut(s) 209, 621, 873
HpySE526I ACGT 1 cut(s) 244
Hsp92I GRCGYC 1 cut(s) 884
Hsp92II CATG 5 cut(s) 317, 598, 991, 1113, 1125
HspAI GCGC 2 cut(s) 69, 884
KasI GGCGCC 1 cut(s) 883
Ksp22I TGATCA 2 cut(s) 261, 984
KspAI GTTAAC 1 cut(s) 859
Kzo9I GATC 8 cut(s) 72, 141, 261, 414, 552, 583, 984, 1072
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 5 cut(s) 55, 159, 581, 616, 898
Lsp1109I GCAGC 1 cut(s) 757
MaeI CTAG 3 cut(s) 86, 471, 801
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 3 cut(s) 5, 507, 607
MalI GATC 8 cut(s) 74, 143, 263, 416, 554, 585, 986, 1074
MboI GATC 8 cut(s) 72, 141, 261, 414, 552, 583, 984, 1072
MhlI GDGCHC 1 cut(s) 52
MlsI TGGCCA 1 cut(s) 836
MluCI AATT 2 cut(s) 198, 689
MluNI TGGCCA 1 cut(s) 836
Mly113I GGCGCC 1 cut(s) 884
MlyI GAGTC 4 cut(s) 114, 209, 364, 1028
MnlI CCTC 9 cut(s) 235, 357, 488, 616, 648, 717, 774, 928, 958
Mox20I TGGCCA 1 cut(s) 836
MroXI GAANNNNTTC 1 cut(s) 388
MscI TGGCCA 1 cut(s) 836
MseI TTAA 4 cut(s) 57, 308, 852, 858
MslI CAYNNNNRTG 1 cut(s) 599
Msp20I TGGCCA 1 cut(s) 836
MspI CCGG 8 cut(s) 130, 403, 749, 795, 807, 848, 863, 925
MspR9I CCNGG 3 cut(s) 796, 848, 863
Mva1269I GAATGC 1 cut(s) 220
MvnI CGCG 3 cut(s) 71, 394, 931
MwoI GCNNNNNNNGC 9 cut(s) 18, 47, 160, 318, 403, 728, 745, 890, 951
NarI GGCGCC 1 cut(s) 884
NciI CCSGG 3 cut(s) 796, 848, 863
NcoI CCATGG 1 cut(s) 313
NdeII GATC 8 cut(s) 72, 141, 261, 414, 552, 583, 984, 1072
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 5 cut(s) 317, 598, 991, 1113, 1125
NlaIV GGNNCC 3 cut(s) 577, 618, 885
NmuCI GTSAC 2 cut(s) 5, 607
NspI RCATGY 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 348
PcsI WCGNNNNNNNCGW 1 cut(s) 1036
PctI GAATGC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 388
PfeI GAWTC 2 cut(s) 703, 1027
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 2 cut(s) 396, 772
PleI GAGTC 4 cut(s) 114, 209, 364, 1027
PluTI GGCGCC 1 cut(s) 887
PpsI GAGTC 4 cut(s) 114, 209, 364, 1027
Ppu21I YACGTR 1 cut(s) 245
PspFI CCCAGC 2 cut(s) 697, 790
PspN4I GGNNCC 3 cut(s) 577, 618, 885
PspPI GGNCC 3 cut(s) 797, 804, 922
PsrI GAACNNNNNNTAC 4 cut(s) 174, 206, 1024, 1056
RsaI GTAC 2 cut(s) 662, 1042
RsaNI GTAC 2 cut(s) 661, 1041
RseI CAYNNNNRTG 1 cut(s) 599
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 4 cut(s) 57, 308, 852, 858
SatI GCNGC 2 cut(s) 395, 771
Sau3AI GATC 8 cut(s) 72, 141, 261, 414, 552, 583, 984, 1072
Sau96I GGNCC 3 cut(s) 797, 804, 922
SchI GAGTC 4 cut(s) 114, 209, 364, 1028
ScrFI CCNGG 3 cut(s) 796, 848, 863
SduI GDGCHC 1 cut(s) 52
SfoI GGCGCC 1 cut(s) 885
SinI GGWCC 2 cut(s) 804, 922
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 2 cut(s) 198, 689
SsiI CCGC 4 cut(s) 10, 228, 394, 746
SspDI GGCGCC 1 cut(s) 883
SspMI CTAG 3 cut(s) 86, 471, 801
StyD4I CCNGG 3 cut(s) 794, 846, 861
StyI CCWWGG 3 cut(s) 313, 800, 909
TaaI ACNGT 4 cut(s) 38, 613, 844, 1060
TaiI ACGT 1 cut(s) 247
TaqI TCGA 5 cut(s) 109, 144, 302, 1030, 1096
TaqII GACCGA 1 cut(s) 578
TasI AATT 2 cut(s) 198, 689
TatI WGTACW 1 cut(s) 660
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 2 cut(s) 703, 1027
Tru1I TTAA 4 cut(s) 57, 308, 852, 858
Tru9I TTAA 4 cut(s) 57, 308, 852, 858
TscAI CASTG 6 cut(s) 384, 519, 847, 903, 921, 946
TseFI GTSAC 2 cut(s) 5, 607
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 2 cut(s) 5, 607
TspDTI ATGAA 3 cut(s) 450, 702, 1026
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 6 cut(s) 384, 519, 847, 903, 921, 946
Van91I CCANNNNNTGG 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 804, 922
XceI RCATGY 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmaJI CCTAGG 1 cut(s) 800
XmnI GAANNNNTTC 1 cut(s) 388
XspI CTAG 3 cut(s) 86, 471, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.