AT1G76480

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
28692070 .. 28693428
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76480.1

Sequence Viewer

Length: 651 bp
ATGTTGGATCTAATTTTGAAACAGCTACTGAATAACAGGGTTGCTGATTACAAGATTGGAATCAGAAAAGAATCGTATTTTCCATTAAACAGGACACTCTGCTACTTACTATTATGTCTTGTAGTCTTGGTAAATGGTTTGCCTTGTCTCTGCCACGATAACATCTTTATATGTTGGGAAGGAACTGTGGAGAGAAACTCTGCCATTGCAATCGGGTTCTCGCGTTTACAAGTTACAAGGACTGAAGTCGAATTCCTGATACCAGCTCGGGTCTCGCTGCAACTACTAAAGAACCATGAAATGGAATTGAAGCTAAACCAAATGAGGAGATTACTAAACACTGAGAAGCTGATCTTCAAGGCAGAAAGTCTCAAAGAAGTTAACAATAAGGCTGGATTGAATGTTTTGGTGACCTTGGAACCCGAGGGGATTGTGGCAATACCAAATTCTAGAGAAAGATATTTTATCATTTACAACATAGTTTGTGAAGAACAACTCATGGGGATACCTTATTCAAGCTGGTCAGTGGTTCTGTTAGTAGCTTTGTGTCTCGTGGTGTCGTTCATAGTTCCTCGATCTTTACCATCGTCTCTTCTTACAAAAGATCAAGGTTTACGTTCTTCTCATCGCAGCCATGGGAAAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.6

Weight (kDa)

8.85

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 301
AccII CGCG 1 cut(s) 223
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 2 cut(s) 251, 445
AcuI CTGAAG 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 5 cut(s) 19, 310, 358, 400, 516
AluBI AGCT 6 cut(s) 25, 266, 313, 349, 519, 542
AluI AGCT 6 cut(s) 25, 266, 313, 349, 519, 542
Alw26I GTCTC 5 cut(s) 152, 277, 374, 554, 594
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 28
Ama87I CYCGRG 2 cut(s) 267, 422
ApeKI GCWGC 2 cut(s) 277, 630
ApoI RAATTY 2 cut(s) 251, 445
AsuHPI GGTGA 1 cut(s) 421
AvaI CYCGRG 2 cut(s) 267, 422
BauI CACGAG 1 cut(s) 551
BbvI GCAGC 2 cut(s) 264, 642
BccI CCATC 1 cut(s) 592
BciVI GTATCC 1 cut(s) 498
BcoDI GTCTC 5 cut(s) 152, 277, 374, 554, 594
BfaI CTAG 1 cut(s) 450
BfuI GTATCC 1 cut(s) 498
BisI GCNGC 2 cut(s) 278, 631
BlsI GCNGC 2 cut(s) 279, 632
BmeT110I CYCGRG 2 cut(s) 267, 422
BmiI GGNNCC 1 cut(s) 420
BoxI GACNNNNGTC 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BsaBI GATNNNNATC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 3 cut(s) 414, 423, 634
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 59
BseDI CCNNGG 3 cut(s) 414, 423, 634
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 2 cut(s) 264, 642
Bsh1236I CGCG 1 cut(s) 223
BsiHKCI CYCGRG 2 cut(s) 267, 422
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 5 cut(s) 152, 277, 374, 554, 594
BsmBI CGTCTC 1 cut(s) 594
Bso31I GGTCTC 1 cut(s) 277
BsoBI CYCGRG 2 cut(s) 267, 422
Bsp143I GATC 4 cut(s) 7, 351, 575, 604
Bsp19I CCATGG 1 cut(s) 634
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 420
BspPI GGATC 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 204
BssECI CCNNGG 3 cut(s) 414, 423, 634
BssMI GATC 4 cut(s) 7, 351, 575, 604
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 2 cut(s) 414, 634
Bst2BI CACGAG 1 cut(s) 551
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 597
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 634
BstEII GGTNACC 1 cut(s) 409
BstFNI CGCG 1 cut(s) 223
BstKTI GATC 4 cut(s) 10, 354, 578, 607
BstMAI GTCTC 5 cut(s) 152, 277, 374, 554, 594
BstMBI GATC 4 cut(s) 7, 351, 575, 604
BstPAI GACNNNNGTC 1 cut(s) 245
BstPI GGTNACC 1 cut(s) 409
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 264, 642
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuI GTATCC 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 634
BtgZI GCGATG 1 cut(s) 611
BtsIMutI CAGTG 2 cut(s) 339, 531
CaiI CAGNNNCTG 1 cut(s) 28
CviAII CATG 3 cut(s) 296, 499, 635
CviJI RGCY 8 cut(s) 25, 266, 313, 349, 392, 519, 542, 633
CviKI_1 RGCY 8 cut(s) 25, 266, 313, 349, 392, 519, 542, 633
DdeI CTNAG 1 cut(s) 342
DpnI GATC 4 cut(s) 9, 353, 577, 606
DpnII GATC 4 cut(s) 7, 351, 575, 604
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 414, 634
Eco31I GGTCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 2 cut(s) 267, 422
Eco91I GGTNACC 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 409
EcoRI GAATTC 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 414, 634
ErhI CCWWGG 2 cut(s) 414, 634
Esp3I CGTCTC 1 cut(s) 594
FaeI CATG 3 cut(s) 299, 502, 638
FaiI YATR 8 cut(s) 115, 170, 172, 297, 479, 500, 566, 636
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 3 cut(s) 295, 498, 634
Fnu4HI GCNGC 2 cut(s) 278, 631
Fsp4HI GCNGC 2 cut(s) 278, 631
FspBI CTAG 1 cut(s) 450
GluI GCNGC 2 cut(s) 278, 631
Hin1II CATG 3 cut(s) 299, 502, 638
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 3 cut(s) 60, 71, 644
HpaI GTTAAC 1 cut(s) 382
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 227, 382, 614
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 3 cut(s) 256, 450, 648
Hpy8I GTNNAC 3 cut(s) 227, 382, 614
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 2 cut(s) 209, 280
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 616
Hsp92II CATG 3 cut(s) 299, 502, 638
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 4 cut(s) 7, 351, 575, 604
LpnPI CCDG 6 cut(s) 22, 76, 269, 276, 378, 505
Lsp1109I GCAGC 2 cut(s) 264, 642
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 616
MaeIII GTNAC 2 cut(s) 232, 409
MalI GATC 4 cut(s) 9, 353, 577, 606
MboI GATC 4 cut(s) 7, 351, 575, 604
MboII GAAGA 4 cut(s) 346, 500, 584, 612
MflI RGATCY 1 cut(s) 7
MluCI AATT 4 cut(s) 12, 251, 305, 445
MnlI CCTC 3 cut(s) 318, 418, 582
MseI TTAA 2 cut(s) 86, 381
MvnI CGCG 1 cut(s) 223
NcoI CCATGG 1 cut(s) 634
NdeII GATC 4 cut(s) 7, 351, 575, 604
NlaIII CATG 3 cut(s) 299, 502, 638
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 409
PfeI GAWTC 3 cut(s) 60, 71, 644
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 2 cut(s) 279, 632
PshAI GACNNNNGTC 1 cut(s) 245
PspEI GGTNACC 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 7
SaqAI TTAA 2 cut(s) 86, 381
SatI GCNGC 2 cut(s) 278, 631
Sau3AI GATC 4 cut(s) 7, 351, 575, 604
Sse9I AATT 4 cut(s) 12, 251, 305, 445
SspMI CTAG 1 cut(s) 450
StyI CCWWGG 2 cut(s) 414, 634
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 619
TaqI TCGA 2 cut(s) 249, 574
TasI AATT 4 cut(s) 12, 251, 305, 445
TfiI GAWTC 3 cut(s) 60, 71, 644
Tru1I TTAA 2 cut(s) 86, 381
Tru9I TTAA 2 cut(s) 86, 381
TscAI CASTG 2 cut(s) 346, 531
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 277, 630
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 312, 553
TspRI CASTG 2 cut(s) 346, 531
Van91I CCANNNNNTGG 1 cut(s) 301
XapI RAATTY 2 cut(s) 251, 445
XbaI TCTAGA 1 cut(s) 449
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.