Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009381.1

Orthogroup ID

OG0006181

Physical Location & Seq

Genomic Coordinates Reverse (-)

1658 .. 3587

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009381.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgtgtcagatacgtgtttgtcatgttttgattaccactctctacattgtctggattgttatcggtggttcgagtttaagccatggaagcctgatagacaagaaggttctgaatgtaggggaagaggtatggagggagactctgccactgcgtatgggttcgcggctttaccggcttcaagggatcaagcctgatacttggtatgaagtcaagatatcatatccagcttctatacctgctagcttttccatgcaactcaagagaggggacttggaattgcctttgaatgggaacagaagattactgaacacagaaaagctgattttcaagagcgaaaatgatggctcgaatgatcagggtggcatgtatgtgctggtgtcggtggagcctgagggggttgttgccataccaaatgtgcaggagagggagtacatcattttcaacatagtttgtgatgaactattgctggggattcctcgtcaagcttggtgggttgtaggctttgtggtggtgtgtttgaaagtggcaccgattgctccagtggtcaagaccttggcagtgctggtccggtcgcgtgaggccactgactcattgggcttctgggaagaggcgaatggcctgatgttgatcatggctactgcgactgaaaagaatgaagaagagtcgtggaatcgaacgagtcgtatttgtaggagaagaacggtcggtggtgatgatcttgtcgtgttttgtgtggctcgatcggtggtggtgggttgcaagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.55

Weight (kDa)

7.54

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20890 AT1G20890 AT1G76480 AT1G76480
fragaria_vesca	FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150
malus_domestica	MD08G1109000.v1.1
prunus_persica	Prupe.1G443600_v2.0.a1 Prupe.1G443800_v2.0.a1
pyrus_communis	pycom08g09080
rosa_chinensis	RchiOBHm_Chr6g0306801
rosa_laevigata	RLG00000010765
rosa_multiflora	Rmu_sc0009381.1_g000002
rosa_rugosa	Rorug06G0353000 Rorug06G0353100 Rorug06G0353100 Rorug06G0353100
rosa_samantha	Rh6AG464800 Rh6AG464900 Rh6BG435900 Rh6CG479300 Rh6DG466200
rosa_wichuraiana	Rw6G040510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	526
AccII	CGCG	2 cut(s)	163, 574
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	5 cut(s)	179, 286, 328, 442, 520
AluBI	AGCT	4 cut(s)	227, 243, 319, 485
AluI	AGCT	4 cut(s)	227, 243, 319, 485
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	2 cut(s)	579, 616
AspS9I	GGNCC	1 cut(s)	565
AsuHPI	GGTGA	1 cut(s)	722
AsuNHI	GCTAGC	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	565
AxyI	CCTNAGG	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	526
BccI	CCATC	1 cut(s)	335
BclI	TGATCA	2 cut(s)	352, 627
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	2 cut(s)	387, 528
BmtI	GCTAGC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BpmI	CTGGAG	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	14
BsaBI	GATNNNNATC	2 cut(s)	59, 626
BsaJI	CCNNGG	2 cut(s)	82, 552
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	539
Bse21I	CCTNAGG	1 cut(s)	390
Bse8I	GATNNNNATC	2 cut(s)	59, 626
BseDI	CCNNGG	2 cut(s)	82, 552
BseJI	GATNNNNATC	2 cut(s)	59, 626
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	539
BseYI	CCCAGC	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	437
Bsh1236I	CGCG	2 cut(s)	163, 574
Bsh1285I	CGRYCG	3 cut(s)	572, 705, 743
BshFI	GGCC	2 cut(s)	581, 618
BshNI	GGYRCC	1 cut(s)	526
BsiEI	CGRYCG	3 cut(s)	572, 705, 743
BsiSI	CCGG	2 cut(s)	172, 568
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	581, 618
Bsp143I	GATC	5 cut(s)	183, 352, 627, 715, 740
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	581, 618
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	2 cut(s)	163, 574
BspLI	GGNNCC	2 cut(s)	387, 528
BspMI	ACCTGC	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	526
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	82, 552
BssMI	GATC	5 cut(s)	183, 352, 627, 715, 740
BssT1I	CCWWGG	2 cut(s)	82, 552
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	3 cut(s)	117, 600, 654
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	82
BstFNI	CGCG	2 cut(s)	163, 574
BstKTI	GATC	5 cut(s)	186, 355, 630, 718, 743
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	5 cut(s)	183, 352, 627, 715, 740
BstMCI	CGRYCG	3 cut(s)	572, 705, 743
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 172, 533
BstNSI	RCATGY	1 cut(s)	367
BstUI	CGCG	2 cut(s)	163, 574
Bsu36I	CCTNAGG	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	581, 618
BtgI	CCRYGG	1 cut(s)	82
BtsI	GCAGTG	2 cut(s)	146, 564
BtsIMutI	CAGTG	4 cut(s)	146, 546, 564, 582
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	565
Csp6I	GTAC	1 cut(s)	430
CspCI	CAANNNNNGTGG	2 cut(s)	470, 505
CviAII	CATG	5 cut(s)	23, 83, 250, 364, 631
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	5 cut(s)	185, 354, 629, 717, 742
DpnII	GATC	5 cut(s)	183, 352, 627, 715, 740
Eam1104I	CTCTTC	3 cut(s)	117, 600, 654
EarI	CTCTTC	3 cut(s)	117, 600, 654
Eco130I	CCWWGG	2 cut(s)	82, 552
Eco32I	GATATC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	565
Eco81I	CCTNAGG	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	82, 552
ErhI	CCWWGG	2 cut(s)	82, 552
FaeI	CATG	5 cut(s)	26, 86, 253, 367, 634
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	5 cut(s)	22, 82, 249, 363, 630
FbaI	TGATCA	2 cut(s)	352, 627
Fnu4HI	GCNGC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	164
GsaI	CCCAGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	522
HaeIII	GGCC	2 cut(s)	581, 618
HapII	CCGG	2 cut(s)	172, 568
Hin1II	CATG	5 cut(s)	26, 86, 253, 367, 634
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	6 cut(s)	139, 472, 587, 662, 670, 679
HpaII	CCGG	2 cut(s)	172, 568
HphI	GGTGA	1 cut(s)	722
Hpy188I	TCNGA	2 cut(s)	9, 111
Hpy188III	TCNNGA	5 cut(s)	52, 211, 259, 328, 547
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	3 cut(s)	253, 418, 759
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 172, 533
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	5 cut(s)	26, 86, 253, 367, 634
Ksp22I	TGATCA	2 cut(s)	352, 627
Kzo9I	GATC	5 cut(s)	183, 352, 627, 715, 740
LmnI	GCTCC	2 cut(s)	385, 541
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	13
MalI	GATC	5 cut(s)	185, 354, 629, 717, 742
MboI	GATC	5 cut(s)	183, 352, 627, 715, 740
MboII	GAAGA	6 cut(s)	134, 309, 617, 668, 671, 708
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	4 cut(s)	133, 581, 671, 688
MnlI	CCTC	8 cut(s)	118, 126, 257, 385, 417, 486, 571, 601
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	2 cut(s)	172, 568
MvnI	CGCG	2 cut(s)	163, 574
MwoI	GCNNNNNNNGC	3 cut(s)	87, 172, 533
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	5 cut(s)	183, 352, 627, 715, 740
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	5 cut(s)	26, 86, 253, 367, 634
NlaIV	GGNNCC	2 cut(s)	387, 528
NspI	RCATGY	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	679
PfeI	GAWTC	2 cut(s)	472, 670
PkrI	GCNGC	1 cut(s)	165
Ple19I	CGATCG	1 cut(s)	743
PleI	GAGTC	4 cut(s)	133, 581, 670, 687
PpsI	GAGTC	4 cut(s)	133, 581, 670, 687
Ppu21I	YACGTR	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	466
PspN4I	GGNNCC	2 cut(s)	387, 528
PspPI	GGNCC	1 cut(s)	565
PvuI	CGATCG	1 cut(s)	743
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	5 cut(s)	183, 352, 627, 715, 740
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	4 cut(s)	133, 581, 671, 688
SetI	ASST	9 cut(s)	16, 108, 129, 229, 238, 245, 321, 487, 554
SinI	GGWCC	1 cut(s)	565
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	82, 552
TaaI	ACNGT	1 cut(s)	703
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	4 cut(s)	71, 347, 673, 739
TasI	AATT	1 cut(s)	275
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	2 cut(s)	472, 670
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	4 cut(s)	153, 546, 564, 589
TspDTI	ATGAA	3 cut(s)	219, 471, 669
TspRI	CASTG	4 cut(s)	153, 546, 564, 589
VpaK11BI	GGWCC	1 cut(s)	565
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.