Prupe.1G443600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
37617607 .. 37619446
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G443600.1

Sequence Viewer

Length: 597 bp
ATGCGTCAGATGCGTAATCGTAGTCTTATGATCACACTCTACATCATCTGCATCGTTATCAGCTGCTCAAATTCAAGCCATGGGAACACGACAGACAGCAAAGTTTTGAATGTTGGTGAAGAGCTGTGGAAGGAAACTCTGCCACTAAAAATGGGTTCACGCCTTTACCAGCTTCAAGGACTGAAGCCTGATACTTGGTACGAAGTGAAAATATCGTATCCAGCTTCTATACCTGCTAGATTTTCCGTACAACTCAAGAGAGGGGACTTGGAATCTGCACTGACTGGGAACAGAAGATTACTAAATACAGAAAAGCTGATTTTCAAGACTGAAAGTCTTGGCTCGAACGATCAGGGTGGCATGTATGTGTTGGTGAGTGTGGAGCCAGAAGGAGTTGTTGCAATACCAAATGTGCAGGAGAGGGAACACATCATTTTCAATATAGTTTGTGATGAACTACTATTGGGAATTCCGTACAAAGCTTGGTGGGTTGTAGGCTTTGTGTTGGTGTGCTTGGTTTTGGCGTTCACCATCCCAGCATTTCTTCCACCCTTTTTGTTACGGCCAGTGGATCAAAATGCTTCTAAAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.29

Weight (kDa)

7.64

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
AclWI GGATC 1 cut(s) 579
AcoI YGGCCR 1 cut(s) 563
AcsI RAATTY 2 cut(s) 70, 468
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 3 cut(s) 200, 249, 476
AgsI TTSAA 5 cut(s) 75, 109, 176, 325, 439
AhdI GACNNNNNGTC 1 cut(s) 333
AluBI AGCT 6 cut(s) 63, 124, 172, 224, 316, 482
AluI AGCT 6 cut(s) 63, 124, 172, 224, 316, 482
AlwI GGATC 1 cut(s) 579
AoxI GGCC 1 cut(s) 563
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 2 cut(s) 70, 468
AsuHPI GGTGA 3 cut(s) 128, 385, 520
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 539
BceAI ACGGC 1 cut(s) 578
BciVI GTATCC 1 cut(s) 228
BclI TGATCA 1 cut(s) 30
BfaI CTAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 241
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmeRI GACNNNNNGTC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 289, 566
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 531
BseNI ACTGG 2 cut(s) 289, 566
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 535
BsgI GTGCAG 2 cut(s) 261, 434
BshFI GGCC 1 cut(s) 565
BslFI GGGAC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 565
Bsp143I GATC 3 cut(s) 30, 349, 571
Bsp19I CCATGG 1 cut(s) 79
BspANI GGCC 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 384
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 1 cut(s) 579
BspQI GCTCTTC 1 cut(s) 114
BsrI ACTGG 2 cut(s) 289, 566
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 3 cut(s) 30, 349, 571
BssT1I CCWWGG 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 531
BstKTI GATC 3 cut(s) 33, 352, 574
BstMBI GATC 3 cut(s) 30, 349, 571
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 50
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 565
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 531
BtsIMutI CAGTG 2 cut(s) 278, 573
BveI ACCTGC 1 cut(s) 241
Csp6I GTAC 3 cut(s) 199, 248, 475
CspCI CAANNNNNGTGG 2 cut(s) 537, 572
CviAII CATG 2 cut(s) 80, 361
CviQI GTAC 3 cut(s) 199, 248, 475
DpnI GATC 3 cut(s) 32, 351, 573
DpnII GATC 3 cut(s) 30, 349, 571
DriI GACNNNNNGTC 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 563
Eam1104I CTCTTC 1 cut(s) 114
Eam1105I GACNNNNNGTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 2 cut(s) 83, 364
FaiI YATR 6 cut(s) 29, 81, 230, 362, 366, 443
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 79, 360
FbaI TGATCA 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 1 cut(s) 518
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 237
GluI GCNGC 1 cut(s) 64
GsaI CCCAGC 1 cut(s) 539
HaeIII GGCC 1 cut(s) 565
Hin1II CATG 2 cut(s) 83, 364
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 2 cut(s) 272, 590
HphI GGTGA 3 cut(s) 128, 385, 520
Hpy166II GTNNAC 2 cut(s) 158, 528
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 256, 325, 594
Hpy8I GTNNAC 2 cut(s) 158, 528
HpyAV CCTTC 2 cut(s) 124, 383
HpyCH4V TGCA 4 cut(s) 51, 278, 401, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 2 cut(s) 83, 364
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 3 cut(s) 30, 349, 571
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 558
MalI GATC 3 cut(s) 32, 351, 573
MboI GATC 3 cut(s) 30, 349, 571
MboII GAAGA 3 cut(s) 131, 306, 536
MluCI AATT 2 cut(s) 70, 468
MnlI CCTC 2 cut(s) 254, 414
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 79
NdeII GATC 3 cut(s) 30, 349, 571
NlaIII CATG 2 cut(s) 83, 364
NlaIV GGNNCC 1 cut(s) 384
NspI RCATGY 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 272, 590
PkrI GCNGC 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 535
PspN4I GGNNCC 1 cut(s) 384
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 3 cut(s) 200, 249, 476
RsaNI GTAC 3 cut(s) 199, 248, 475
RseI CAYNNNNRTG 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 114
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 3 cut(s) 30, 349, 571
SetI ASST 7 cut(s) 65, 126, 174, 226, 235, 318, 484
SfaNI GCATC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 70, 468
SspMI CTAG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 79
TaqI TCGA 1 cut(s) 344
TasI AATT 2 cut(s) 70, 468
TfiI GAWTC 2 cut(s) 272, 590
TscAI CASTG 2 cut(s) 285, 573
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 468
TspGWI ACGGA 2 cut(s) 235, 462
TspRI CASTG 2 cut(s) 285, 573
XapI RAATTY 2 cut(s) 70, 468
XceI RCATGY 1 cut(s) 364
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.