Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008530

Physical Location & Seq

Genomic Coordinates Reverse (-)

7489046 .. 7490803

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTAGATCCTTCTTCTGCTAAATCCTTCAATACCCATTTGTGTTTTCCGAGTATTCCCAATGATGATCACTCAGATTCCGGTGTCTGTTCGCCTACTTTGTGGAGAACCAGTCCCCCGAAGAGTCCTCCTCCTTTTCACCGGCCGGAAGATTACTGGAGTCTTTCGCCGGATTCTAAAGCACAGGCTATTGCTCGTGGTCAACGGGAGCTTATGGAAATGGTTAGTAAGATGCCTGAGTCGTGTTACGAGCTTTCATTGAAGGATCTTGTTGAAGTTAAGGTGAATCAAGAGAATGAACGGAAGGTGTTCGATGAATTGCCTAAGAGAGCAAATAGGCAGAGTAAAGTTGTGAGGAAGACGAAGAGTGATAAACGGGTTGATCCGAATAGGAGTGGAGGAGGAAATAATAGTGGGTTTCTTCTCAAAATTATGTTTCTGGTTAGTTTAGGAGCTATGAAGGATACGACTAAGAAGAAGAAGAAGAAGAAAAAGGATGAGGCTTGTAAGGTTTCACCGAGACCTTCGATCTCTGAGGAGACTGTGAAAGTAGAGGATAAAGAATGGTGGAATAGAATGTCTGAATCGAGCACAAAGAGGAGTGGTAGTAGCAGTAGCAACAACAGTATTAGGAGCCGAAGCAGCTTAAGGGATGAAAAAAGTAGCTGCTTCTCTTTTCTTACATTCAAGAAACTAATTCCTCAGTATCTGAAACAAAGATTTATTGGCTTAAGAAGCAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

28.24

Weight (kDa)

9.84

Isoelectric Point (pI)

65.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21390 AT1G76980 AT1G76980
fragaria_vesca	FvH4_2g15290 FvH4_2g15290 FvH4_2g15290 FvH4_2g15290
malus_domestica	MD05G1009200.v1.1 MD10G1007900.v1.1
prunus_persica	Prupe.8G011500_v2.0.a1
pyrus_communis	pycom05g00480 pycom10g00500
rosa_chinensis	RchiOBHm_Chr6g0278041
rosa_laevigata	RLG00000013246
rosa_multiflora	Rmu_co8365837.1_g000001 Rmu_sc0000791.1_g000012
rosa_roxburghii	Rroxscaffold_7G00190570
rosa_rugosa	Rorug06G0114200
rosa_samantha	Rh6AG224000 Rh6BG228100 Rh6CG230600 Rh6DG221500
rosa_wichuraiana	Rw6G019560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	2, 273, 377
AcoI	YGGCCR	1 cut(s)	143
AflII	CTTAAG	2 cut(s)	646, 730
AgsI	TTSAA	4 cut(s)	31, 262, 275, 688
AluBI	AGCT	6 cut(s)	211, 253, 455, 645, 666, 743
AluI	AGCT	6 cut(s)	211, 253, 455, 645, 666, 743
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	2 cut(s)	514, 533
AlwI	GGATC	3 cut(s)	2, 273, 377
AlwNI	CAGNNNCTG	1 cut(s)	709
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	642, 666
Asp700I	GAANNNNTTC	1 cut(s)	308
AsuHPI	GGTGA	3 cut(s)	131, 295, 507
BauI	CACGAG	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	2 cut(s)	653, 654
BciVI	GTATCC	1 cut(s)	457
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	514, 533
BfrI	CTTAAG	2 cut(s)	646, 730
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	2 cut(s)	643, 667
BlsI	GCNGC	2 cut(s)	644, 668
BmiI	GGNNCC	1 cut(s)	635
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	365
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpmI	CTGGAG	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	514
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 592, 622
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	111, 161
BseGI	GGATG	2 cut(s)	502, 658
BseMII	CTCAG	4 cut(s)	87, 228, 525, 716
BseNI	ACTGG	2 cut(s)	111, 161
BseRI	GAGGAG	4 cut(s)	120, 414, 551, 613
BseX3I	CGGCCG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	653, 654
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	593
BsiSI	CCGG	4 cut(s)	81, 142, 146, 170
BslFI	GGGAC	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	514, 533
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	5 cut(s)	7, 67, 265, 382, 528
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	4 cut(s)	86, 229, 526, 715
BspLI	GGNNCC	1 cut(s)	635
BspPI	GGATC	3 cut(s)	2, 273, 377
BspTI	CTTAAG	2 cut(s)	646, 730
BspTNI	GGTCTC	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	111, 161
BssAI	RCCGGY	1 cut(s)	141
BssMI	GATC	5 cut(s)	7, 67, 265, 382, 528
BssSI	CACGAG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	544, 626
Bst6I	CTCTTC	2 cut(s)	116, 359
BstAFI	CTTAAG	2 cut(s)	646, 730
BstDEI	CTNAG	6 cut(s)	73, 237, 324, 471, 534, 702
BstF5I	GGATG	2 cut(s)	502, 658
BstKTI	GATC	5 cut(s)	10, 70, 268, 385, 531
BstMAI	GTCTC	2 cut(s)	514, 533
BstMBI	GATC	5 cut(s)	7, 67, 265, 382, 528
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	642, 735
BstV1I	GCAGC	2 cut(s)	653, 654
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	7, 265
BstYI	RGATCY	2 cut(s)	7, 265
BstZI	CGGCCG	1 cut(s)	143
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	502, 658
CaiI	CAGNNNCTG	1 cut(s)	709
Cfr10I	RCCGGY	1 cut(s)	141
DdeI	CTNAG	6 cut(s)	73, 237, 324, 471, 534, 702
DpnI	GATC	5 cut(s)	9, 69, 267, 384, 530
DpnII	GATC	5 cut(s)	7, 67, 265, 382, 528
EaeI	YGGCCR	1 cut(s)	143
EagI	CGGCCG	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	116, 359
EarI	CTCTTC	2 cut(s)	116, 359
EclXI	CGGCCG	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	514
Eco52I	CGGCCG	1 cut(s)	143
FaiI	YATR	3 cut(s)	215, 434, 458
FalI	AAGNNNNNCTT	1 cut(s)	727
FaqI	GGGAC	1 cut(s)	99
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	643, 667
FokI	GGATG	2 cut(s)	509, 665
Fsp4HI	GCNGC	2 cut(s)	643, 667
GluI	GCNGC	2 cut(s)	643, 667
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	4 cut(s)	81, 142, 146, 170
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HinfI	GANTC	7 cut(s)	77, 124, 160, 173, 239, 286, 584
HpaII	CCGG	4 cut(s)	81, 142, 146, 170
HphI	GGTGA	3 cut(s)	131, 295, 507
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	6 cut(s)	51, 76, 387, 535, 583, 711
Hpy188III	TCNNGA	2 cut(s)	290, 688
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	6 cut(s)	21, 37, 256, 298, 454, 534
HpyCH4III	ACNGT	2 cut(s)	544, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	642, 735
HpyF3I	CTNAG	6 cut(s)	73, 237, 324, 471, 534, 702
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	7, 67, 265, 382, 528
LmnI	GCTCC	3 cut(s)	208, 452, 633
LpnPI	CCDG	9 cut(s)	94, 124, 142, 155, 159, 170, 183, 249, 425
Lsp1109I	GCAGC	2 cut(s)	653, 654
LweI	GCATC	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	5 cut(s)	9, 69, 267, 384, 530
MboI	GATC	5 cut(s)	7, 67, 265, 382, 528
MflI	RGATCY	2 cut(s)	7, 265
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	3 cut(s)	317, 429, 696
MlyI	GAGTC	3 cut(s)	133, 169, 248
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	3 cut(s)	279, 647, 731
MspCI	CTTAAG	2 cut(s)	646, 730
MspI	CCGG	4 cut(s)	81, 142, 146, 170
MwoI	GCNNNNNNNGC	2 cut(s)	642, 735
NdeII	GATC	5 cut(s)	7, 67, 265, 382, 528
NlaIV	GGNNCC	1 cut(s)	635
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	4 cut(s)	77, 173, 286, 584
PkrI	GCNGC	2 cut(s)	644, 668
PleI	GAGTC	3 cut(s)	132, 168, 247
PpsI	GAGTC	3 cut(s)	132, 168, 247
PspN4I	GGNNCC	1 cut(s)	635
PstNI	CAGNNNCTG	1 cut(s)	709
PsuI	RGATCY	2 cut(s)	7, 265
SaqAI	TTAA	3 cut(s)	279, 647, 731
SatI	GCNGC	2 cut(s)	643, 667
Sau3AI	GATC	5 cut(s)	7, 67, 265, 382, 528
SchI	GAGTC	3 cut(s)	133, 169, 248
SduI	GDGCHC	1 cut(s)	593
SfaNI	GCATC	1 cut(s)	222
SmlI	CTYRAG	2 cut(s)	646, 730
SmoI	CTYRAG	2 cut(s)	646, 730
Sse9I	AATT	3 cut(s)	317, 429, 696
TaaI	ACNGT	2 cut(s)	544, 626
TaqI	TCGA	3 cut(s)	312, 527, 587
TasI	AATT	3 cut(s)	317, 429, 696
TfiI	GAWTC	4 cut(s)	77, 173, 286, 584
Tru1I	TTAA	3 cut(s)	279, 647, 731
Tru9I	TTAA	3 cut(s)	279, 647, 731
TseI	GCWGC	2 cut(s)	642, 666
TspDTI	ATGAA	5 cut(s)	246, 312, 330, 473, 669
TspGWI	ACGGA	1 cut(s)	316
Vha464I	CTTAAG	2 cut(s)	646, 730
XmnI	GAANNNNTTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.