Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008530

Physical Location & Seq

Genomic Coordinates Reverse (-)

28925708 .. 28927391

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCAATTTTCGATCTTTCGTCGAAATCATTCGATAGCCATTTGAATTTTCCGAGAACTTTCGATGATCATTCAGATTCCGGCGTCTGTTCGCCTCCTCTGTGGAGAACGAGTCCACCGAAAAGTCCTGCTCATCTTCACAACAATTACCAGAATCTCTCACCTGTTACGAAGGCTCAAGTCATCGCTCGTGGTCAGCGTGAGCTTATGGATATGGTTAGTAAGATGCCCGAGTCGTGTTACGAGCTTTCGTTGAAGGATCTCGTTGAGGTTAACACGGAGGAGGAGAAGGTGTTCGATGAAATGCCTCAGAGAGAAAAAAAGCCGAGGAAAGTCGTGAGGAAGACGAAGAGTGATAAATGGGTGGATCCGATTCGAAACGGAGGTGTTAATAATAGTGGGTTTCTTCTGAAACTGGTGTTTCCTGTTAGCTTGGGTGCTAAGAAAAAGACTAATAAGAAGAAAGATAATGATGATGATGATTCTTCTGTGACAAGTAAAAGGTCTTGGATTTCTTCTCCTAGACCTTCGATCTCTGATCTGTCGATGAAACGAGAGGATAAAGATTGGTGGAAGGATGGATTGTCAGAATCTCGTAGGAGTCAAAGTGTTGTCTCGAGGATCAACAGTGGGAGCTCAAAGAGCAGTGGTGGTAGTAGCAGTAGAAGCAATAGTGATCGAAGCCGAAACAGTCTAAGGTATCCACAAACTCTGGCCAATTTATTTAGGAATCCGTTGAGGTGTTTTGCATCTAGTTCTAGAATTTGCTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.24

Weight (kDa)

9.74

Isoelectric Point (pI)

66.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21390 AT1G76980 AT1G76980
fragaria_vesca	FvH4_2g15290 FvH4_2g15290 FvH4_2g15290 FvH4_2g15290
malus_domestica	MD05G1009200.v1.1 MD10G1007900.v1.1
prunus_persica	Prupe.8G011500_v2.0.a1
pyrus_communis	pycom05g00480 pycom10g00500
rosa_chinensis	RchiOBHm_Chr6g0278041
rosa_laevigata	RLG00000013246
rosa_multiflora	Rmu_co8365837.1_g000001 Rmu_sc0000791.1_g000012
rosa_roxburghii	Rroxscaffold_7G00190570
rosa_rugosa	Rorug06G0114200
rosa_samantha	Rh6AG224000 Rh6BG228100 Rh6CG230600 Rh6DG221500
rosa_wichuraiana	Rw6G019560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	267, 362, 375, 629
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	2 cut(s)	46, 762
AcyI	GRCGYC	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	46, 256
AloI	GAACNNNNNNTCC	2 cut(s)	278, 310
AluBI	AGCT	4 cut(s)	205, 247, 432, 636
AluI	AGCT	4 cut(s)	205, 247, 432, 636
Alw21I	GWGCWC	1 cut(s)	638
Alw26I	GTCTC	1 cut(s)	619
AlwI	GGATC	4 cut(s)	267, 362, 375, 629
Ama87I	CYCGRG	2 cut(s)	230, 616
AoxI	GGCC	1 cut(s)	714
ApoI	RAATTY	2 cut(s)	46, 762
Asp700I	GAANNNNTTC	2 cut(s)	29, 293
AsuHPI	GGTGA	1 cut(s)	153
AsuII	TTCGAA	1 cut(s)	376
AvaI	CYCGRG	2 cut(s)	230, 616
BalI	TGGCCA	1 cut(s)	716
BamHI	GGATCC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	638
BauI	CACGAG	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	638
BccI	CCATC	1 cut(s)	572
BciVI	GTATCC	1 cut(s)	711
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	619
BfaI	CTAG	3 cut(s)	522, 753, 759
BfuI	GTATCC	1 cut(s)	711
BmeT110I	CYCGRG	2 cut(s)	230, 616
BmiI	GGNNCC	1 cut(s)	369
BmsI	GCATC	2 cut(s)	216, 758
BpiI	GAAGAC	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	6 cut(s)	97, 127, 278, 308, 592, 622
Bse1I	ACTGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	583
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	3 cut(s)	87, 296, 299
BshFI	GGCC	1 cut(s)	716
BsiHKAI	GWGCWC	1 cut(s)	638
BsiHKCI	CYCGRG	2 cut(s)	230, 616
BsiSI	CCGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	619
BsnI	GGCC	1 cut(s)	716
BsoBI	CYCGRG	2 cut(s)	230, 616
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp143I	GATC	8 cut(s)	13, 67, 259, 367, 531, 538, 621, 676
BspANI	GGCC	1 cut(s)	716
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	369
BspPI	GGATC	4 cut(s)	267, 362, 375, 629
BspT104I	TTCGAA	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	8 cut(s)	13, 67, 259, 367, 531, 538, 621, 676
BssNI	GRCGYC	1 cut(s)	84
BssSI	CACGAG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	629, 692
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	376
BstDEI	CTNAG	3 cut(s)	309, 441, 695
BstF5I	GGATG	1 cut(s)	583
BstKTI	GATC	8 cut(s)	16, 70, 262, 370, 534, 541, 624, 679
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	8 cut(s)	13, 67, 259, 367, 531, 538, 621, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	642, 666
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	259, 367
BstYI	RGATCY	2 cut(s)	259, 367
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	1 cut(s)	716
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	583
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	2 cut(s)	634, 652
CseI	GACGC	1 cut(s)	73
CviJI	RGCY	9 cut(s)	39, 176, 205, 247, 325, 432, 636, 684, 716
CviKI_1	RGCY	9 cut(s)	39, 176, 205, 247, 325, 432, 636, 684, 716
DdeI	CTNAG	3 cut(s)	309, 441, 695
DpnI	GATC	8 cut(s)	15, 69, 261, 369, 533, 540, 623, 678
DpnII	GATC	8 cut(s)	13, 67, 259, 367, 531, 538, 621, 676
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	636
Eco24I	GRGCYC	1 cut(s)	638
Eco53kI	GAGCTC	1 cut(s)	636
Eco88I	CYCGRG	2 cut(s)	230, 616
EcoICRI	GAGCTC	1 cut(s)	636
EcoT38I	GRGCYC	1 cut(s)	638
FaiI	YATR	2 cut(s)	209, 215
FbaI	TGATCA	1 cut(s)	67
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	638
FspBI	CTAG	3 cut(s)	522, 753, 759
HaeIII	GGCC	1 cut(s)	716
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	9 cut(s)	77, 112, 154, 233, 373, 482, 590, 601, 730
HpaI	GTTAAC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	2 cut(s)	116, 274
Hpy188I	TCNGA	8 cut(s)	54, 76, 312, 372, 411, 538, 589, 776
Hpy188III	TCNNGA	3 cut(s)	337, 616, 759
Hpy8I	GTNNAC	2 cut(s)	116, 274
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	5 cut(s)	166, 250, 283, 537, 568
HpyCH4III	ACNGT	2 cut(s)	629, 692
HpyCH4V	TGCA	1 cut(s)	749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	642, 666
HpyF3I	CTNAG	3 cut(s)	309, 441, 695
Hsp92I	GRCGYC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	67
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	8 cut(s)	13, 67, 259, 367, 531, 538, 621, 676
LmnI	GCTCC	1 cut(s)	633
LpnPI	CCDG	7 cut(s)	94, 141, 164, 177, 401, 438, 698
LweI	GCATC	2 cut(s)	216, 758
MaeI	CTAG	3 cut(s)	522, 753, 759
MaeIII	GTNAC	3 cut(s)	166, 239, 490
MalI	GATC	8 cut(s)	15, 69, 261, 369, 533, 540, 623, 678
MboI	GATC	8 cut(s)	13, 67, 259, 367, 531, 538, 621, 676
MboII	GAAGA	7 cut(s)	128, 355, 361, 398, 472, 477, 507
MflI	RGATCY	2 cut(s)	259, 367
MhlI	GDGCHC	1 cut(s)	638
MlsI	TGGCCA	1 cut(s)	716
MluCI	AATT	5 cut(s)	6, 46, 145, 718, 762
MluNI	TGGCCA	1 cut(s)	716
MlyI	GAGTC	3 cut(s)	121, 242, 610
Mox20I	TGGCCA	1 cut(s)	716
MroXI	GAANNNNTTC	2 cut(s)	29, 293
MscI	TGGCCA	1 cut(s)	716
MseI	TTAA	2 cut(s)	273, 390
Msp20I	TGGCCA	1 cut(s)	716
MspI	CCGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	642, 666
NdeII	GATC	8 cut(s)	13, 67, 259, 367, 531, 538, 621, 676
NlaIV	GGNNCC	1 cut(s)	369
NmeAIII	GCCGAG	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	490
NspV	TTCGAA	1 cut(s)	376
PaeR7I	CTCGAG	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	2 cut(s)	116, 196
PdmI	GAANNNNTTC	2 cut(s)	29, 293
PfeI	GAWTC	6 cut(s)	77, 154, 373, 482, 590, 730
PleI	GAGTC	3 cut(s)	120, 241, 609
PpsI	GAGTC	3 cut(s)	120, 241, 609
Psp124BI	GAGCTC	1 cut(s)	638
PspN4I	GGNNCC	1 cut(s)	369
PsuI	RGATCY	2 cut(s)	259, 367
SacI	GAGCTC	1 cut(s)	638
SaqAI	TTAA	2 cut(s)	273, 390
Sau3AI	GATC	8 cut(s)	13, 67, 259, 367, 531, 538, 621, 676
SchI	GAGTC	3 cut(s)	121, 242, 610
SduI	GDGCHC	1 cut(s)	638
SfaNI	GCATC	2 cut(s)	216, 758
Sfr274I	CTCGAG	1 cut(s)	616
SfuI	TTCGAA	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	616
SmlI	CTYRAG	2 cut(s)	177, 616
SmoI	CTYRAG	2 cut(s)	177, 616
Sse9I	AATT	5 cut(s)	6, 46, 145, 718, 762
SspMI	CTAG	3 cut(s)	522, 753, 759
SstI	GAGCTC	1 cut(s)	638
TaaI	ACNGT	2 cut(s)	629, 692
TasI	AATT	5 cut(s)	6, 46, 145, 718, 762
TfiI	GAWTC	6 cut(s)	77, 154, 373, 482, 590, 730
Tru1I	TTAA	2 cut(s)	273, 390
Tru9I	TTAA	2 cut(s)	273, 390
TscAI	CASTG	2 cut(s)	634, 652
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	315, 563
TspGWI	ACGGA	3 cut(s)	293, 396, 723
TspRI	CASTG	2 cut(s)	634, 652
XapI	RAATTY	2 cut(s)	46, 762
XbaI	TCTAGA	1 cut(s)	758
XhoI	CTCGAG	1 cut(s)	616
XmnI	GAANNNNTTC	2 cut(s)	29, 293
XspI	CTAG	3 cut(s)	522, 753, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.