RLG00000013246

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008530
Physical Location & Seq
Reverse (-)
28588163 .. 28590127
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013246

Sequence Viewer

Length: 873 bp
ATGCTTGACCCTCACACAAACGACCACCCTTTTCTTTTTAACCCAGAAAACACGAGCGAAACTACTTACAGTACTTGGCAACCTATCAACTACTCTTCCCGGGTTCAGAAAACAGCTCAGAACTACAAGAGCTGGAAGAGCATGGGCGCTCTTCGTTTAAATGCCGCCGAGGAGGAGTCCCCCTCCGGCGTTTGCTCCCCGCCTCTGTGGAAAACCACCACCACCAGCCCCCCGAAAAGCCCGAACCGGCTTGTGAACAATTACCGGAGTCTTTCGCCGGCTTCTCGGACTCAGGCCATTGCCAGAGGACAGAGAGAGCTGATGGAGATGGTGCGCAACATGCCCGAGTCGTGTTACGAGCTTTCGCTCAAGGATCTTGTGGAGAGGCCAAGAATGGTGGAGGTTGAGGCGGATGGAGATGATGCGAGCACTGAAGCCTTGGTGAAAAGGGAAGTTGGGAAGGTGAAGAAGAAGAATGATAGGAAGAAGCCAATGGTGGTGAGGAGTGGGAGTTTTGACAGTGGGGGGTTTCTGTTGAAGATGGTGGTTCCAATTTCGTTGGGGTCCAATAAGAAGAATAAGATGGTGATGATGAATAAGAATAAGAAGAACAAGAGTGATTCCGTGGAGGGAGATAGTACTACTGCAAAGGTTTCTCCCAGGCCTAGTGTGGATAAGGATTGGTGGAAGAAGAGAGTTTCTGCTTCAGGAGGATCGGGGAGAAGTGAAAGCGGTCTTTCGAGTATTATTAGTGAAAGCATCAAAAGTAGTAGTGGTAGCAGCACTAGCAGTTGTAGCAGCAGAAGCAGCAGCAGGCGCAAGACTGGTGGCTGCTGGTCGTTCATCCTGCTCAAGAAGAAGAGGCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

32.14

Weight (kDa)

9.89

Isoelectric Point (pI)

64.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 335
AciI CCGC 4 cut(s) 165, 200, 410, 732
AclWI GGATC 2 cut(s) 381, 721
AcuI CTGAAG 2 cut(s) 453, 690
AfaI GTAC 2 cut(s) 73, 640
AgsI TTSAA 1 cut(s) 538
AjnI CCWGG 1 cut(s) 659
AluBI AGCT 4 cut(s) 116, 132, 319, 361
AluI AGCT 4 cut(s) 116, 132, 319, 361
Alw21I GWGCWC 1 cut(s) 431
AlwI GGATC 2 cut(s) 381, 721
Ama87I CYCGRG 2 cut(s) 99, 344
AoxI GGCC 3 cut(s) 294, 386, 662
ApeKI GCWGC 5 cut(s) 780, 798, 807, 810, 831
AspLEI GCGC 3 cut(s) 149, 336, 819
AspS9I GGNCC 1 cut(s) 564
AsuC2I CCSGG 2 cut(s) 100, 101
AsuHPI GGTGA 4 cut(s) 454, 475, 511, 598
AvaI CYCGRG 2 cut(s) 99, 344
AvaII GGWCC 1 cut(s) 564
BauI CACGAG 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 5 cut(s) 792, 810, 818, 819, 822
BccI CCATC 5 cut(s) 316, 322, 407, 535, 577
BciT130I CCWGG 1 cut(s) 661
BcnI CCSGG 2 cut(s) 100, 101
BfaI CTAG 2 cut(s) 666, 786
BfoI RGCGCY 1 cut(s) 150
BisI GCNGC 6 cut(s) 165, 781, 799, 808, 811, 832
BlsI GCNGC 6 cut(s) 166, 782, 800, 809, 812, 833
BmcAI AGTACT 2 cut(s) 73, 640
Bme1390I CCNGG 3 cut(s) 100, 101, 661
Bme18I GGWCC 1 cut(s) 564
BmeT110I CYCGRG 2 cut(s) 99, 344
BmgT120I GGNCC 1 cut(s) 564
BmiI GGNNCC 2 cut(s) 549, 565
BmrFI CCNGG 3 cut(s) 100, 101, 661
BmsI GCATC 2 cut(s) 412, 768
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpuEI CTTGAG 2 cut(s) 353, 836
BpuMI CCSGG 2 cut(s) 100, 101
BsaJI CCNNGG 5 cut(s) 99, 168, 438, 624, 659
BsaWI WCCGGW 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bse118I RCCGGY 2 cut(s) 246, 277
Bse1I ACTGG 1 cut(s) 829
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 5 cut(s) 99, 168, 438, 624, 659
BseGI GGATG 2 cut(s) 418, 843
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 2 cut(s) 131, 305
BseNI ACTGG 1 cut(s) 829
BseRI GAGGAG 3 cut(s) 185, 188, 517
BseXI GCAGC 5 cut(s) 792, 810, 818, 819, 822
BshFI GGCC 3 cut(s) 296, 388, 664
BsiHKAI GWGCWC 1 cut(s) 431
BsiHKCI CYCGRG 2 cut(s) 99, 344
BsiSI CCGG 5 cut(s) 100, 186, 247, 265, 278
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 3 cut(s) 296, 388, 664
BsoBI CYCGRG 2 cut(s) 99, 344
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 2 cut(s) 373, 713
BspACI CCGC 4 cut(s) 165, 200, 410, 732
BspANI GGCC 3 cut(s) 296, 388, 664
BspCNI CTCAG 2 cut(s) 130, 304
BspLI GGNNCC 2 cut(s) 549, 565
BspPI GGATC 2 cut(s) 381, 721
BspQI GCTCTTC 2 cut(s) 131, 156
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 2 cut(s) 246, 277
BsrI ACTGG 1 cut(s) 829
BssAI RCCGGY 2 cut(s) 246, 277
BssECI CCNNGG 5 cut(s) 99, 168, 438, 624, 659
BssMI GATC 2 cut(s) 373, 713
BssSI CACGAG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 2 cut(s) 71, 521
Bst6I CTCTTC 5 cut(s) 100, 131, 156, 686, 854
BstC8I GCNNGC 3 cut(s) 279, 427, 815
BstDEI CTNAG 2 cut(s) 117, 291
BstDSI CCRYGG 1 cut(s) 624
BstF5I GGATG 2 cut(s) 418, 843
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 3 cut(s) 149, 336, 819
BstKTI GATC 2 cut(s) 376, 716
BstMBI GATC 2 cut(s) 373, 713
BstMWI GCNNNNNNNGC 7 cut(s) 138, 340, 786, 795, 804, 807, 816
BstNI CCWGG 1 cut(s) 661
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 3 cut(s) 98, 99, 659
BstV1I GCAGC 5 cut(s) 792, 810, 818, 819, 822
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 3 cut(s) 296, 388, 664
BtgI CCRYGG 1 cut(s) 624
BtsCI GGATG 2 cut(s) 418, 843
BtsIMutI CAGTG 2 cut(s) 429, 526
Cac8I GCNNGC 3 cut(s) 279, 427, 815
CfoI GCGC 3 cut(s) 149, 336, 819
Cfr10I RCCGGY 2 cut(s) 246, 277
Cfr13I GGNCC 1 cut(s) 564
Cfr9I CCCGGG 1 cut(s) 99
Csp6I GTAC 2 cut(s) 72, 639
CspCI CAANNNNNGTGG 4 cut(s) 378, 413, 808, 843
CviAII CATG 2 cut(s) 142, 340
CviQI GTAC 2 cut(s) 72, 639
DdeI CTNAG 2 cut(s) 117, 291
DpnI GATC 2 cut(s) 375, 715
DpnII GATC 2 cut(s) 373, 713
DraI TTTAAA 1 cut(s) 159
Eam1104I CTCTTC 5 cut(s) 100, 131, 156, 686, 854
EarI CTCTTC 5 cut(s) 100, 131, 156, 686, 854
EciI GGCGGA 1 cut(s) 425
Eco130I CCWWGG 1 cut(s) 438
Eco147I AGGCCT 1 cut(s) 664
Eco47I GGWCC 1 cut(s) 564
Eco57I CTGAAG 2 cut(s) 453, 690
Eco88I CYCGRG 2 cut(s) 99, 344
EcoRII CCWGG 1 cut(s) 659
EcoT14I CCWWGG 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 2 cut(s) 145, 343
FaiI YATR 2 cut(s) 143, 341
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 141, 339
FauI CCCGC 1 cut(s) 207
Fnu4HI GCNGC 6 cut(s) 165, 781, 799, 808, 811, 832
FokI GGATG 2 cut(s) 425, 830
Fsp4HI GCNGC 6 cut(s) 165, 781, 799, 808, 811, 832
FspBI CTAG 2 cut(s) 666, 786
FspI TGCGCA 1 cut(s) 335
GlaI GCGC 3 cut(s) 148, 335, 818
GluI GCNGC 6 cut(s) 165, 781, 799, 808, 811, 832
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 3 cut(s) 296, 388, 664
HapII CCGG 5 cut(s) 100, 186, 247, 265, 278
HhaI GCGC 3 cut(s) 149, 336, 819
Hin1II CATG 2 cut(s) 145, 343
Hin6I GCGC 3 cut(s) 147, 334, 817
HinP1I GCGC 3 cut(s) 147, 334, 817
HinfI GANTC 5 cut(s) 176, 268, 289, 347, 620
HpaII CCGG 5 cut(s) 100, 186, 247, 265, 278
HphI GGTGA 4 cut(s) 454, 475, 511, 598
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 108, 120, 288
Hpy188III TCNNGA 2 cut(s) 708, 853
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 2 cut(s) 71, 521
HpyCH4V TGCA 1 cut(s) 647
HpyF10VI GCNNNNNNNGC 7 cut(s) 138, 340, 786, 795, 804, 807, 816
HpyF3I CTNAG 2 cut(s) 117, 291
Hsp92II CATG 2 cut(s) 145, 343
HspAI GCGC 3 cut(s) 147, 334, 817
KroI GCCGGC 1 cut(s) 277
KroNI GCCGGC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 373, 713
LguI GCTCTTC 2 cut(s) 131, 156
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 5 cut(s) 792, 810, 818, 819, 822
LweI GCATC 2 cut(s) 412, 768
MaeI CTAG 2 cut(s) 666, 786
MaeIII GTNAC 1 cut(s) 353
MalI GATC 2 cut(s) 375, 715
MboI GATC 2 cut(s) 373, 713
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 2 cut(s) 259, 552
MlyI GAGTC 4 cut(s) 185, 277, 283, 356
MroNI GCCGGC 1 cut(s) 277
MseI TTAA 2 cut(s) 39, 158
MspI CCGG 5 cut(s) 100, 186, 247, 265, 278
MspR9I CCNGG 3 cut(s) 100, 101, 661
MvaI CCWGG 1 cut(s) 661
MwoI GCNNNNNNNGC 7 cut(s) 138, 340, 786, 795, 804, 807, 816
NaeI GCCGGC 1 cut(s) 279
NciI CCSGG 2 cut(s) 100, 101
NdeII GATC 2 cut(s) 373, 713
NgoMIV GCCGGC 1 cut(s) 277
NlaIII CATG 2 cut(s) 145, 343
NlaIV GGNNCC 2 cut(s) 549, 565
NmeAIII GCCGAG 1 cut(s) 193
NsbI TGCGCA 1 cut(s) 335
NspI RCATGY 1 cut(s) 343
PceI AGGCCT 1 cut(s) 664
PciSI GCTCTTC 2 cut(s) 131, 156
PdiI GCCGGC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 620
PkrI GCNGC 6 cut(s) 166, 782, 800, 809, 812, 833
PleI GAGTC 4 cut(s) 184, 276, 283, 355
PpsI GAGTC 4 cut(s) 184, 276, 283, 355
Psp6I CCWGG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 2 cut(s) 549, 565
PspPI GGNCC 1 cut(s) 564
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 2 cut(s) 73, 640
RsaNI GTAC 2 cut(s) 72, 639
SapI GCTCTTC 2 cut(s) 131, 156
SaqAI TTAA 2 cut(s) 39, 158
SatI GCNGC 6 cut(s) 165, 781, 799, 808, 811, 832
Sau3AI GATC 2 cut(s) 373, 713
Sau96I GGNCC 1 cut(s) 564
ScaI AGTACT 2 cut(s) 73, 640
SchI GAGTC 4 cut(s) 185, 277, 283, 356
ScrFI CCNGG 3 cut(s) 100, 101, 661
SduI GDGCHC 1 cut(s) 431
SetI ASST 8 cut(s) 85, 118, 134, 321, 363, 405, 465, 654
SfaNI GCATC 2 cut(s) 412, 768
SinI GGWCC 1 cut(s) 564
SmaI CCCGGG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 368, 851
SmoI CTYRAG 2 cut(s) 368, 851
Sse9I AATT 2 cut(s) 259, 552
SseBI AGGCCT 1 cut(s) 664
SsiI CCGC 4 cut(s) 165, 200, 410, 732
SspMI CTAG 2 cut(s) 666, 786
StuI AGGCCT 1 cut(s) 664
StyD4I CCNGG 3 cut(s) 98, 99, 659
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 71, 521
TaqI TCGA 1 cut(s) 740
TasI AATT 2 cut(s) 259, 552
TatI WGTACW 2 cut(s) 71, 638
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 2 cut(s) 39, 158
Tru9I TTAA 2 cut(s) 39, 158
TscAI CASTG 2 cut(s) 436, 526
TseI GCWGC 5 cut(s) 780, 798, 807, 810, 831
TspDTI ATGAA 2 cut(s) 608, 832
TspGWI ACGGA 1 cut(s) 613
TspMI CCCGGG 1 cut(s) 99
TspRI CASTG 2 cut(s) 436, 526
VpaK11BI GGWCC 1 cut(s) 564
XceI RCATGY 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 667
XmaI CCCGGG 1 cut(s) 99
XspI CTAG 2 cut(s) 666, 786
ZrmI AGTACT 2 cut(s) 73, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.