Prupe.8G011500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0008530
Physical Location & Seq
Reverse (-)
935723 .. 938122
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G011500.1

Sequence Viewer

Length: 993 bp
ATGTTTGATCTCAACGCAAATCCACATGAACACCCTTTCCTGTTCAACAGTGGTACAGAGAAAATCACAAGTGACACAAGCCATGATACTTGGCAGGCCGTGAACTATGCCTCCCGGGCTCAGAAAACAGCTCAGAATTATGCAAACTACAGGAGCTGGAACAGCATGGGAGCTCGGATAAACGAGGGAGCTTCTACTGATGATGACGAATACGACTCCCGTGTTTGCTCGCCGCCGTTGTGGGAAACGGCAAGTCGTGTGAACAACTACCGGAGCTTGTCCCCTGCTTCTAGAACGCAAGCGATTGCCAGAGGGCAGAGGGAGATGATGGAGATGGTGAAGAACATGCCCGAGTCGTGTTATGAGCTTTCGTTGAAAGATCTGGTGGAGCATAAGAAGCCAATGGTGGATGAAGAAGATGATCGAGATCAAAATGAAGAAGAAGATGATAAAAGTACTCAAGTTTTGGTTAGGAGGGGAAATCTAAATGACGAAGGGAATTATAAGAAGAAAAAGAGTGAGAAGAAGAAATTGGTTATGAGAAGTGGGAGTATAGATAGTGGGGGGTTTCTTTTGAAGATGGTTTTCCCAATTTCTTTGGGGCTCAATAAGAAAAACATGAACAAGATCAACAGCAGCAACAACAACAACAACAACAAGATGAAGAAGAGTGACAGTGTGGTGGTGGGTGCAAATAGCAATAATTCAACAAGTGCAAAGGTGTCTCCAAAGCCTCAGGGGCAGGGGCATGGGCAGGGGGTGGATGGATCTGTGAAGGGGGGTGTGGAGAGTGAGTGGTGGAAGATGAAGAGGCTTTCTGTTTCTGAAAGGAGTGAAAGTGGTGTTTCTAGTATTAACAGTGGAAGCATGAAAAGCAGTGGCAGCAGCAGCATTAGCAGTTCTAGCACCAGAAGCATCAGCAGCAGCAGCAGGCGCAAGAAGGGTGGCTGCTGGTCATTTATCATGCTCAAGAAGAATAAAAGGCGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

36.74

Weight (kDa)

9.46

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AciI CCGC 2 cut(s) 233, 985
AclWI GGATC 1 cut(s) 775
AfaI GTAC 2 cut(s) 55, 457
AgsI TTSAA 4 cut(s) 46, 376, 577, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AloI GAACNNNNNNTCC 4 cut(s) 21, 53, 95, 127
AluBI AGCT 6 cut(s) 131, 156, 173, 191, 276, 367
AluI AGCT 6 cut(s) 131, 156, 173, 191, 276, 367
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 729
AlwI GGATC 1 cut(s) 775
AlwNI CAGNNNCTG 1 cut(s) 156
Ama87I CYCGRG 2 cut(s) 114, 350
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 8 cut(s) 636, 882, 885, 888, 921, 924, 927, 948
AspLEI GCGC 1 cut(s) 936
AsuC2I CCSGG 2 cut(s) 115, 116
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 2 cut(s) 114, 350
AxyI CCTNAGG 1 cut(s) 735
BanII GRGCYC 3 cut(s) 121, 175, 606
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 8 cut(s) 648, 894, 897, 900, 933, 935, 936, 939
BccI CCATC 4 cut(s) 322, 328, 574, 758
BceAI ACGGC 3 cut(s) 83, 220, 264
BcnI CCSGG 2 cut(s) 115, 116
BcoDI GTCTC 1 cut(s) 729
BfaI CTAG 3 cut(s) 291, 849, 903
BfmI CTRYAG 1 cut(s) 148
BglI GCCNNNNNGGC 2 cut(s) 116, 739
BglII AGATCT 1 cut(s) 379
BisI GCNGC 9 cut(s) 233, 637, 883, 886, 889, 922, 925, 928, 949
BlsI GCNGC 9 cut(s) 234, 638, 884, 887, 890, 923, 926, 929, 950
BmcAI AGTACT 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 115, 116
BmeT110I CYCGRG 2 cut(s) 114, 350
BmrFI CCNGG 2 cut(s) 115, 116
BmsI GCATC 1 cut(s) 924
BpuEI CTTGAG 2 cut(s) 444, 953
BpuMI CCSGG 2 cut(s) 115, 116
BsaBI GATNNNNATC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 779, 809, 823, 853
Bse21I CCTNAGG 1 cut(s) 735
Bse8I GATNNNNATC 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 415, 769
BseJI GATNNNNATC 1 cut(s) 426
BseMII CTCAG 3 cut(s) 134, 146, 749
BseXI GCAGC 8 cut(s) 648, 894, 897, 900, 933, 935, 936, 939
BshFI GGCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 2 cut(s) 114, 350
BsiSI CCGG 2 cut(s) 115, 271
BslFI GGGAC 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 729
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 1 cut(s) 98
BsoBI CYCGRG 2 cut(s) 114, 350
Bsp1286I GDGCHC 3 cut(s) 121, 175, 606
Bsp143I GATC 6 cut(s) 7, 379, 421, 427, 627, 767
BspACI CCGC 2 cut(s) 233, 985
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 3 cut(s) 133, 145, 748
BspPI GGATC 1 cut(s) 775
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 6 cut(s) 7, 379, 421, 427, 627, 767
Bst4CI ACNGT 3 cut(s) 50, 677, 860
Bst6I CTCTTC 2 cut(s) 662, 803
BstC8I GCNNGC 4 cut(s) 96, 230, 300, 932
BstDEI CTNAG 3 cut(s) 120, 132, 735
BstF5I GGATG 2 cut(s) 415, 769
BstHHI GCGC 1 cut(s) 936
BstKTI GATC 6 cut(s) 10, 382, 424, 430, 630, 770
BstMAI GTCTC 1 cut(s) 729
BstMBI GATC 6 cut(s) 7, 379, 421, 427, 627, 767
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 113, 114
BstSFI CTRYAG 1 cut(s) 148
BstV1I GCAGC 8 cut(s) 648, 894, 897, 900, 933, 935, 936, 939
BstX2I RGATCY 2 cut(s) 379, 767
BstYI RGATCY 2 cut(s) 379, 767
Bsu36I CCTNAGG 1 cut(s) 735
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 415, 769
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 4 cut(s) 55, 682, 865, 883
Cac8I GCNNGC 4 cut(s) 96, 230, 300, 932
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 1 cut(s) 936
Cfr9I CCCGGG 1 cut(s) 114
Csp6I GTAC 2 cut(s) 54, 456
CspCI CAANNNNNGTGG 2 cut(s) 925, 960
CviAII CATG 8 cut(s) 26, 83, 166, 346, 619, 749, 868, 964
CviQI GTAC 2 cut(s) 54, 456
DdeI CTNAG 3 cut(s) 120, 132, 735
DpnI GATC 6 cut(s) 9, 381, 423, 429, 629, 769
DpnII GATC 6 cut(s) 7, 379, 421, 427, 627, 767
Eam1104I CTCTTC 2 cut(s) 662, 803
EarI CTCTTC 2 cut(s) 662, 803
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 3 cut(s) 121, 175, 606
Eco53kI GAGCTC 1 cut(s) 173
Eco81I CCTNAGG 1 cut(s) 735
Eco88I CYCGRG 2 cut(s) 114, 350
EcoICRI GAGCTC 1 cut(s) 173
EcoT38I GRGCYC 3 cut(s) 121, 175, 606
FaeI CATG 8 cut(s) 29, 86, 169, 349, 622, 752, 871, 967
FaqI GGGAC 1 cut(s) 265
FatI CATG 8 cut(s) 25, 82, 165, 345, 618, 748, 867, 963
FauI CCCGC 1 cut(s) 978
Fnu4HI GCNGC 9 cut(s) 233, 637, 883, 886, 889, 922, 925, 928, 949
FokI GGATG 2 cut(s) 422, 776
FriOI GRGCYC 3 cut(s) 121, 175, 606
Fsp4HI GCNGC 9 cut(s) 233, 637, 883, 886, 889, 922, 925, 928, 949
FspBI CTAG 3 cut(s) 291, 849, 903
GlaI GCGC 1 cut(s) 935
GluI GCNGC 9 cut(s) 233, 637, 883, 886, 889, 922, 925, 928, 949
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 115, 271
HhaI GCGC 1 cut(s) 936
Hin1II CATG 8 cut(s) 29, 86, 169, 349, 622, 752, 871, 967
Hin6I GCGC 1 cut(s) 934
HinP1I GCGC 1 cut(s) 934
HinfI GANTC 2 cut(s) 215, 353
HpaII CCGG 2 cut(s) 115, 271
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 103, 262
Hpy188I TCNGA 4 cut(s) 123, 135, 177, 826
Hpy188III TCNNGA 3 cut(s) 291, 425, 970
Hpy8I GTNNAC 2 cut(s) 103, 262
HpyAV CCTTC 3 cut(s) 488, 769, 934
HpyCH4III ACNGT 3 cut(s) 50, 677, 860
HpyCH4V TGCA 3 cut(s) 143, 692, 716
HpyF3I CTNAG 3 cut(s) 120, 132, 735
Hsp92II CATG 8 cut(s) 29, 86, 169, 349, 622, 752, 871, 967
HspAI GCGC 1 cut(s) 934
Kzo9I GATC 6 cut(s) 7, 379, 421, 427, 627, 767
LmnI GCTCC 5 cut(s) 153, 170, 188, 273, 388
Lsp1109I GCAGC 8 cut(s) 648, 894, 897, 900, 933, 935, 936, 939
LweI GCATC 1 cut(s) 924
MaeI CTAG 3 cut(s) 291, 849, 903
MaeIII GTNAC 2 cut(s) 71, 671
MalI GATC 6 cut(s) 9, 381, 423, 429, 629, 769
MboI GATC 6 cut(s) 7, 379, 421, 427, 627, 767
MflI RGATCY 2 cut(s) 379, 767
MhlI GDGCHC 3 cut(s) 121, 175, 606
MluCI AATT 5 cut(s) 136, 499, 530, 591, 703
MlyI GAGTC 2 cut(s) 209, 362
MnlI CCTC 7 cut(s) 121, 178, 305, 312, 468, 744, 804
MseI TTAA 1 cut(s) 855
MspI CCGG 2 cut(s) 115, 271
MspR9I CCNGG 2 cut(s) 115, 116
NciI CCSGG 2 cut(s) 115, 116
NdeII GATC 6 cut(s) 7, 379, 421, 427, 627, 767
NlaIII CATG 8 cut(s) 29, 86, 169, 349, 622, 752, 871, 967
NmuCI GTSAC 2 cut(s) 71, 671
NspI RCATGY 1 cut(s) 349
PkrI GCNGC 9 cut(s) 234, 638, 884, 887, 890, 923, 926, 929, 950
PleI GAGTC 2 cut(s) 209, 361
PpsI GAGTC 2 cut(s) 209, 361
PsiI TTATAA 1 cut(s) 504
Psp124BI GAGCTC 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 2 cut(s) 379, 767
RsaI GTAC 2 cut(s) 55, 457
RsaNI GTAC 2 cut(s) 54, 456
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 855
SatI GCNGC 9 cut(s) 233, 637, 883, 886, 889, 922, 925, 928, 949
Sau3AI GATC 6 cut(s) 7, 379, 421, 427, 627, 767
ScaI AGTACT 1 cut(s) 457
SchI GAGTC 2 cut(s) 209, 362
ScrFI CCNGG 2 cut(s) 115, 116
SduI GDGCHC 3 cut(s) 121, 175, 606
SetI ASST 7 cut(s) 133, 158, 175, 193, 278, 369, 723
SfaNI GCATC 1 cut(s) 924
SfcI CTRYAG 1 cut(s) 148
SmaI CCCGGG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 459, 968
SmoI CTYRAG 2 cut(s) 459, 968
Sse9I AATT 5 cut(s) 136, 499, 530, 591, 703
SsiI CCGC 2 cut(s) 233, 985
SspMI CTAG 3 cut(s) 291, 849, 903
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 113, 114
TaaI ACNGT 3 cut(s) 50, 677, 860
TaqI TCGA 1 cut(s) 424
TasI AATT 5 cut(s) 136, 499, 530, 591, 703
TatI WGTACW 1 cut(s) 455
TauI GCSGC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 855
Tru9I TTAA 1 cut(s) 855
TscAI CASTG 4 cut(s) 55, 682, 865, 883
TseFI GTSAC 2 cut(s) 71, 671
TseI GCWGC 8 cut(s) 636, 882, 885, 888, 921, 924, 927, 948
Tsp45I GTSAC 2 cut(s) 71, 671
TspDTI ATGAA 7 cut(s) 42, 426, 450, 635, 677, 821, 884
TspMI CCCGGG 1 cut(s) 114
TspRI CASTG 4 cut(s) 55, 682, 865, 883
XbaI TCTAGA 1 cut(s) 290
XceI RCATGY 1 cut(s) 349
XmaI CCCGGG 1 cut(s) 114
XspI CTAG 3 cut(s) 291, 849, 903
ZrmI AGTACT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.