Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008530

Physical Location & Seq

Genomic Coordinates Reverse (-)

30741304 .. 30743829

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAAATGGTGCGCAACATGCCCGAATCGTGTTACGAGCTATCGCTCAAGGATCTTGTGGAGAGGCCAAGAATGGTGGAGGTTGAGGTGGATGGAGATGATGCGAGCACTGAAGCTTTGGTGAAAAGGGGAGTTGGGAAGGTGAAGAAGAAGAATGATAGGAAGAAGCCAATGGTGGTGAGGAGTGGGAGTTTTGACAGTGGGGGGTTTCTGTTGAAGATGGTGTTTCCAATTTCGTTGGGGTCCAATAAGCAGAATAAGATGGTGATGATCAATAAGAACAAGAAGAACAAGAGTGATTCTGTGGAGGGAGATAGAACTACTGCAAAGGTTTCTCCCAGACCTAGTGTGGATAAGGATTGGTGGAAGAAGAGAGTTTCTTCTTCAGGAGGATCGGGAAGAAGTGAAAGCGGTGTTTCGAGTATTATTAGTGGAAGCATCAAAAGTAGTAGTGGTAGCAGCACCAGCAGTTGTAGCAGCAGCAGGCGCAAGACTGGTGGCTGCTGGTCGTTCATCTTGCTCAAGAAGAAGAGGCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.75

Weight (kDa)

10.04

Isoelectric Point (pI)

63.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21390 AT1G76980 AT1G76980
fragaria_vesca	FvH4_2g15290 FvH4_2g15290 FvH4_2g15290 FvH4_2g15290
malus_domestica	MD05G1009200.v1.1 MD10G1007900.v1.1
prunus_persica	Prupe.8G011500_v2.0.a1
pyrus_communis	pycom05g00480 pycom10g00500
rosa_chinensis	RchiOBHm_Chr6g0278041
rosa_laevigata	RLG00000013246
rosa_multiflora	Rmu_co8365837.1_g000001 Rmu_sc0000791.1_g000012
rosa_roxburghii	Rroxscaffold_7G00190570
rosa_rugosa	Rorug06G0114200
rosa_samantha	Rh6AG224000 Rh6BG228100 Rh6CG230600 Rh6DG221500
rosa_wichuraiana	Rw6G019560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	14
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	2 cut(s)	60, 400
AcuI	CTGAAG	2 cut(s)	132, 369
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	2 cut(s)	40, 116
AluI	AGCT	2 cut(s)	40, 116
Alw21I	GWGCWC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	60, 400
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	4 cut(s)	459, 477, 480, 501
AspLEI	GCGC	2 cut(s)	15, 489
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	4 cut(s)	133, 154, 190, 277
AvaII	GGWCC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	4 cut(s)	471, 488, 489, 492
BccI	CCATC	3 cut(s)	86, 214, 256
BclI	TGATCA	1 cut(s)	270
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	4 cut(s)	460, 478, 481, 502
BlsI	GCNGC	4 cut(s)	461, 479, 482, 503
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	244
BmsI	GCATC	2 cut(s)	91, 447
BpuEI	CTTGAG	2 cut(s)	32, 506
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bse1I	ACTGG	1 cut(s)	499
BseGI	GGATG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	4 cut(s)	471, 488, 489, 492
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	52, 270, 392
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	2 cut(s)	60, 400
BsrI	ACTGG	1 cut(s)	499
BssMI	GATC	3 cut(s)	52, 270, 392
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	2 cut(s)	365, 524
BstC8I	GCNNGC	2 cut(s)	106, 485
BstF5I	GGATG	1 cut(s)	97
BstHHI	GCGC	2 cut(s)	15, 489
BstKTI	GATC	3 cut(s)	55, 273, 395
BstMBI	GATC	3 cut(s)	52, 270, 392
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 465, 474, 486
BstNSI	RCATGY	1 cut(s)	22
BstV1I	GCAGC	4 cut(s)	471, 488, 489, 492
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	108, 205
Cac8I	GCNNGC	2 cut(s)	106, 485
CfoI	GCGC	2 cut(s)	15, 489
Cfr13I	GGNCC	1 cut(s)	243
CspCI	CAANNNNNGTGG	4 cut(s)	57, 92, 478, 513
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	5 cut(s)	40, 67, 116, 169, 501
CviKI_1	RGCY	5 cut(s)	40, 67, 116, 169, 501
DpnI	GATC	3 cut(s)	54, 272, 394
DpnII	GATC	3 cut(s)	52, 270, 392
Eam1104I	CTCTTC	2 cut(s)	365, 524
EarI	CTCTTC	2 cut(s)	365, 524
Eco47I	GGWCC	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	132, 369
FaeI	CATG	1 cut(s)	22
FaiI	YATR	1 cut(s)	20
FatI	CATG	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	4 cut(s)	460, 478, 481, 502
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	460, 478, 481, 502
FspBI	CTAG	1 cut(s)	345
FspI	TGCGCA	1 cut(s)	14
GlaI	GCGC	2 cut(s)	14, 488
GluI	GCNGC	4 cut(s)	460, 478, 481, 502
HaeIII	GGCC	1 cut(s)	67
HhaI	GCGC	2 cut(s)	15, 489
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	2 cut(s)	13, 487
HinP1I	GCGC	2 cut(s)	13, 487
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	2 cut(s)	26, 299
HphI	GGTGA	4 cut(s)	133, 154, 190, 277
Hpy188III	TCNNGA	3 cut(s)	387, 396, 523
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 465, 474, 486
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	2 cut(s)	13, 487
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	52, 270, 392
LpnPI	CCDG	7 cut(s)	352, 372, 469, 478, 480, 490, 521
Lsp1109I	GCAGC	4 cut(s)	471, 488, 489, 492
LweI	GCATC	2 cut(s)	91, 447
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	3 cut(s)	54, 272, 394
MboI	GATC	3 cut(s)	52, 270, 392
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	7 cut(s)	57, 73, 79, 174, 301, 383, 525
MwoI	GCNNNNNNNGC	4 cut(s)	19, 465, 474, 486
NdeII	GATC	3 cut(s)	52, 270, 392
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	244
NsbI	TGCGCA	1 cut(s)	14
NspI	RCATGY	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	26, 299
PkrI	GCNGC	4 cut(s)	461, 479, 482, 503
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	52
SatI	GCNGC	4 cut(s)	460, 478, 481, 502
Sau3AI	GATC	3 cut(s)	52, 270, 392
Sau96I	GGNCC	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	7 cut(s)	42, 84, 90, 118, 144, 333, 346
SfaNI	GCATC	2 cut(s)	91, 447
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	47, 521
SmoI	CTYRAG	2 cut(s)	47, 521
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	1 cut(s)	411
SspMI	CTAG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	419
TasI	AATT	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	26, 299
TscAI	CASTG	2 cut(s)	115, 205
TseI	GCWGC	4 cut(s)	459, 477, 480, 501
TspDTI	ATGAA	1 cut(s)	502
TspRI	CASTG	2 cut(s)	115, 205
VpaK11BI	GGWCC	1 cut(s)	243
XceI	RCATGY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.