Rh6DG221500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008530
Physical Location & Seq
Forward (+)
39466920 .. 39467747
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG221500.1

Sequence Viewer

Length: 828 bp
ATGCTTGACCCTCACACAAACGACCACCCTTTTCTTTTTAACCCAGAAAACACGAGCGAAACTACTTACGGTACTTGGCAACCTATCAACTACTCTTCCCGGGCTCAGAAAACAGCTCAGAACTACAAGAGCTGGAAGAGCATGGGCGCTCTTCGTTTAAATGCCGCTGAGGAGGAGTCCCCCTCCGGCGTTTGCTCCCCGCCTCTGTGGAAAACCACCAGCCCCCCGAAAAGCCCGAACCGGCTTGTGAACAATTACCGGAGTCTTTCGCCGGCTTCTCGGACACAGGCCATTGCCAGAGGACAGAGAGAGCTGATGGAAATGGTGCGCAACATGCCCGAATCGTGTTACGAGCTTTCGCTCAAGGATCTTGTGGAGAGGCCAAGAATGGTGGAGGTTGAGGTGGATGGAGATGATGCGAGCACTGAAGCTTTGGTGAAAAGGGGAGTTGGGAAGGTGAAGAAGAAGAATGATAGGAAGAAGCCAATGGTGGTGAGGAGTGGGAGTTTTGACAGTGGGGGGTTTCTGTTGAAGATGGTGTTTCCAATTTCGTTGGGGTCCAATAAGCAGAATAAGATGGTGATGATCAATAAGAACAAGAAGAACAAGAGTGATTCTGTGGAGGGAGATAGTACTACTGCAAAGGTTTCTCCCAGGCCTAGTGTGGATAAGGATTGGTGGAAGAAGAGAGTTTCTACTTCAGGAGGATCGGGGAGAAGTGAAAGCGGTGTTTCGAGTATTATTAGTGAAAGCATCAAAAGTAGTAGTGGTAGCAGCACTAGCAGTTGTAGCAGCAGAAGCAGCAGCAGGTATGAGAGTTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.43

Weight (kDa)

9.68

Isoelectric Point (pI)

62.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 798
AciI CCGC 3 cut(s) 165, 200, 726
AclWI GGATC 2 cut(s) 375, 715
AcuI CTGAAG 2 cut(s) 447, 684
AfaI GTAC 2 cut(s) 73, 634
AgsI TTSAA 1 cut(s) 532
AjnI CCWGG 1 cut(s) 653
AluBI AGCT 5 cut(s) 116, 132, 313, 355, 431
AluI AGCT 5 cut(s) 116, 132, 313, 355, 431
Alw21I GWGCWC 1 cut(s) 425
AlwI GGATC 2 cut(s) 375, 715
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 3 cut(s) 288, 380, 656
ApeKI GCWGC 4 cut(s) 774, 792, 801, 804
AspLEI GCGC 2 cut(s) 149, 330
AspS9I GGNCC 1 cut(s) 558
AsuC2I CCSGG 2 cut(s) 100, 101
AsuHPI GGTGA 4 cut(s) 448, 469, 505, 592
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 558
BanII GRGCYC 1 cut(s) 106
BauI CACGAG 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 425
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 4 cut(s) 786, 804, 813, 816
BccI CCATC 4 cut(s) 310, 401, 529, 571
BciT130I CCWGG 1 cut(s) 655
BclI TGATCA 1 cut(s) 585
BcnI CCSGG 2 cut(s) 100, 101
BfaI CTAG 2 cut(s) 660, 780
BfoI RGCGCY 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 798
BisI GCNGC 5 cut(s) 165, 775, 793, 802, 805
BlsI GCNGC 5 cut(s) 166, 776, 794, 803, 806
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 3 cut(s) 100, 101, 655
Bme18I GGWCC 1 cut(s) 558
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 558
BmiI GGNNCC 1 cut(s) 559
BmrFI CCNGG 3 cut(s) 100, 101, 655
BmsI GCATC 2 cut(s) 406, 762
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 100, 101
BsaJI CCNNGG 2 cut(s) 99, 653
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bse118I RCCGGY 2 cut(s) 240, 271
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 655
BseDI CCNNGG 2 cut(s) 99, 653
BseGI GGATG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 3 cut(s) 119, 131, 159
BseRI GAGGAG 3 cut(s) 185, 188, 511
BseXI GCAGC 4 cut(s) 786, 804, 813, 816
BshFI GGCC 3 cut(s) 290, 382, 658
BsiHKAI GWGCWC 1 cut(s) 425
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 5 cut(s) 100, 186, 241, 259, 272
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 3 cut(s) 290, 382, 658
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 2 cut(s) 106, 425
Bsp143I GATC 3 cut(s) 367, 585, 707
BspACI CCGC 3 cut(s) 165, 200, 726
BspANI GGCC 3 cut(s) 290, 382, 658
BspCNI CTCAG 3 cut(s) 118, 130, 160
BspLI GGNNCC 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 798
BspPI GGATC 2 cut(s) 375, 715
BspQI GCTCTTC 2 cut(s) 131, 156
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 2 cut(s) 240, 271
BssAI RCCGGY 2 cut(s) 240, 271
BssECI CCNNGG 2 cut(s) 99, 653
BssMI GATC 3 cut(s) 367, 585, 707
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 655
Bst4CI ACNGT 2 cut(s) 71, 515
Bst6I CTCTTC 4 cut(s) 100, 131, 156, 680
BstC8I GCNNGC 2 cut(s) 273, 421
BstDEI CTNAG 3 cut(s) 105, 117, 168
BstF5I GGATG 1 cut(s) 412
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 2 cut(s) 149, 330
BstKTI GATC 3 cut(s) 370, 588, 710
BstMBI GATC 3 cut(s) 367, 585, 707
BstMWI GCNNNNNNNGC 6 cut(s) 138, 334, 780, 789, 798, 801
BstNI CCWGG 1 cut(s) 655
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 3 cut(s) 98, 99, 653
BstV1I GCAGC 4 cut(s) 786, 804, 813, 816
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 3 cut(s) 290, 382, 658
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 423, 520
BveI ACCTGC 1 cut(s) 798
Cac8I GCNNGC 2 cut(s) 273, 421
CfoI GCGC 2 cut(s) 149, 330
Cfr10I RCCGGY 2 cut(s) 240, 271
Cfr13I GGNCC 1 cut(s) 558
Cfr9I CCCGGG 1 cut(s) 99
Csp6I GTAC 2 cut(s) 72, 633
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 2 cut(s) 142, 334
CviQI GTAC 2 cut(s) 72, 633
DdeI CTNAG 3 cut(s) 105, 117, 168
DpnI GATC 3 cut(s) 369, 587, 709
DpnII GATC 3 cut(s) 367, 585, 707
DraI TTTAAA 1 cut(s) 159
Eam1104I CTCTTC 4 cut(s) 100, 131, 156, 680
EarI CTCTTC 4 cut(s) 100, 131, 156, 680
Eco147I AGGCCT 1 cut(s) 658
Eco24I GRGCYC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 558
Eco57I CTGAAG 2 cut(s) 447, 684
Eco88I CYCGRG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 653
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 2 cut(s) 145, 337
FaiI YATR 3 cut(s) 143, 335, 813
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 141, 333
FauI CCCGC 1 cut(s) 207
FbaI TGATCA 1 cut(s) 585
Fnu4HI GCNGC 5 cut(s) 165, 775, 793, 802, 805
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 5 cut(s) 165, 775, 793, 802, 805
FspBI CTAG 2 cut(s) 660, 780
FspI TGCGCA 1 cut(s) 329
GlaI GCGC 2 cut(s) 148, 329
GluI GCNGC 5 cut(s) 165, 775, 793, 802, 805
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 3 cut(s) 290, 382, 658
HapII CCGG 5 cut(s) 100, 186, 241, 259, 272
HhaI GCGC 2 cut(s) 149, 330
Hin1II CATG 2 cut(s) 145, 337
Hin6I GCGC 2 cut(s) 147, 328
HinP1I GCGC 2 cut(s) 147, 328
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 4 cut(s) 176, 262, 341, 614
HpaII CCGG 5 cut(s) 100, 186, 241, 259, 272
HphI GGTGA 4 cut(s) 448, 469, 505, 592
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 3 cut(s) 108, 120, 282
Hpy188III TCNNGA 1 cut(s) 702
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 2 cut(s) 71, 515
HpyCH4V TGCA 1 cut(s) 641
HpyF10VI GCNNNNNNNGC 6 cut(s) 138, 334, 780, 789, 798, 801
HpyF3I CTNAG 3 cut(s) 105, 117, 168
Hsp92II CATG 2 cut(s) 145, 337
HspAI GCGC 2 cut(s) 147, 328
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 3 cut(s) 367, 585, 707
LguI GCTCTTC 2 cut(s) 131, 156
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 4 cut(s) 786, 804, 813, 816
LweI GCATC 2 cut(s) 406, 762
MaeI CTAG 2 cut(s) 660, 780
MaeIII GTNAC 1 cut(s) 347
MalI GATC 3 cut(s) 369, 587, 709
MboI GATC 3 cut(s) 367, 585, 707
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 106, 425
MluCI AATT 2 cut(s) 253, 546
MlyI GAGTC 2 cut(s) 185, 271
MroNI GCCGGC 1 cut(s) 271
MseI TTAA 2 cut(s) 39, 158
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 5 cut(s) 100, 186, 241, 259, 272
MspR9I CCNGG 3 cut(s) 100, 101, 655
MvaI CCWGG 1 cut(s) 655
MwoI GCNNNNNNNGC 6 cut(s) 138, 334, 780, 789, 798, 801
NaeI GCCGGC 1 cut(s) 273
NciI CCSGG 2 cut(s) 100, 101
NdeII GATC 3 cut(s) 367, 585, 707
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 2 cut(s) 145, 337
NlaIV GGNNCC 1 cut(s) 559
NsbI TGCGCA 1 cut(s) 329
NspI RCATGY 1 cut(s) 337
PceI AGGCCT 1 cut(s) 658
PciSI GCTCTTC 2 cut(s) 131, 156
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 341, 614
PkrI GCNGC 5 cut(s) 166, 776, 794, 803, 806
PleI GAGTC 2 cut(s) 184, 270
PpsI GAGTC 2 cut(s) 184, 270
Psp6I CCWGG 1 cut(s) 653
PspGI CCWGG 1 cut(s) 653
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 1 cut(s) 558
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 2 cut(s) 73, 634
RsaNI GTAC 2 cut(s) 72, 633
SapI GCTCTTC 2 cut(s) 131, 156
SaqAI TTAA 2 cut(s) 39, 158
SatI GCNGC 5 cut(s) 165, 775, 793, 802, 805
Sau3AI GATC 3 cut(s) 367, 585, 707
Sau96I GGNCC 1 cut(s) 558
ScaI AGTACT 1 cut(s) 634
SchI GAGTC 2 cut(s) 185, 271
ScrFI CCNGG 3 cut(s) 100, 101, 655
SduI GDGCHC 2 cut(s) 106, 425
SfaNI GCATC 2 cut(s) 406, 762
SinI GGWCC 1 cut(s) 558
SmaI CCCGGG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 2 cut(s) 253, 546
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 3 cut(s) 165, 200, 726
SspMI CTAG 2 cut(s) 660, 780
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 3 cut(s) 98, 99, 653
TaaI ACNGT 2 cut(s) 71, 515
TaqI TCGA 1 cut(s) 734
TasI AATT 2 cut(s) 253, 546
TatI WGTACW 1 cut(s) 632
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 2 cut(s) 341, 614
Tru1I TTAA 2 cut(s) 39, 158
Tru9I TTAA 2 cut(s) 39, 158
TscAI CASTG 2 cut(s) 430, 520
TseI GCWGC 4 cut(s) 774, 792, 801, 804
TspMI CCCGGG 1 cut(s) 99
TspRI CASTG 2 cut(s) 430, 520
VpaK11BI GGWCC 1 cut(s) 558
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XmaI CCCGGG 1 cut(s) 99
XspI CTAG 2 cut(s) 660, 780
ZrmI AGTACT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.