Rorug06G0114200

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
15611573 .. 15612199
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0114200.1

Sequence Viewer

Length: 495 bp
ATGAAATGGCATCCCGACAAGAATTCCAATAAAAAGAAACAAGCCGAAGCCAAGTTCAAAGAAGTTTCGGAAGCCTATGACGTTCTAAACGACATATTTGCAGAGTTTTTTGGCACGAGAGGGGCAGGTTTTTCAAGTAGTTTGTTTGGTGATAGTAGCTTCTTTTGTGATGACGCATTTGCTTTTAGAGAAGGTGGAGATGGTTCAATGAAATTCGGTGGTCCTCGCAAAGTTCCTCCAATTGAGAATAGGTTGCCTTGTAGGCTTGAAGAGCTTTACAAAGGAACTAGCAATAAGATGAAGATATCCAGAGATATTGCTGACACCAGTGGGAAAGGCATGGAAGTGGAGGAAATTCTAACCATTGACATAAAACCTGGTTGGAAGAAGGGTACTAAAATTACCTTTCTAGAGAAAGAAAATGAACAGCCAAATGTTATTCCTACATATCTTATTTTCATTATTGATGAGAAGCCATACAGTGTTCACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.53

Weight (kDa)

6.18

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 1 - 31 2.9e-09 DnaJ domain
DnaJ_C PF01556 81 - 160 3.7e-10 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 116
AcsI RAATTY 3 cut(s) 22, 212, 354
AfaI GTAC 1 cut(s) 394
AgsI TTSAA 4 cut(s) 58, 135, 207, 269
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 2 cut(s) 159, 274
AluI AGCT 2 cut(s) 159, 274
ApoI RAATTY 3 cut(s) 22, 212, 354
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 221
BauI CACGAG 2 cut(s) 115, 490
BccI CCATC 1 cut(s) 194
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 378
BfaI CTAG 2 cut(s) 288, 410
BfuAI ACCTGC 1 cut(s) 116
BglI GCCNNNNNGGC 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 116
BspQI GCTCTTC 1 cut(s) 264
BsrI ACTGG 1 cut(s) 327
BssSI CACGAG 2 cut(s) 115, 490
Bst2BI CACGAG 2 cut(s) 115, 490
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 264
BstF5I GGATG 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 262, 271
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 334, 487
BveI ACCTGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 1 cut(s) 182
CsiI ACCWGGT 1 cut(s) 376
Csp6I GTAC 1 cut(s) 393
CviAII CATG 1 cut(s) 340
CviJI RGCY 8 cut(s) 44, 50, 74, 159, 265, 274, 430, 475
CviKI_1 RGCY 8 cut(s) 44, 50, 74, 159, 265, 274, 430, 475
CviQI GTAC 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco32I GATATC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 376
EcoRV GATATC 1 cut(s) 306
FaeI CATG 1 cut(s) 343
FaiI YATR 6 cut(s) 78, 95, 341, 371, 448, 478
FatI CATG 1 cut(s) 339
FspBI CTAG 2 cut(s) 288, 410
HgaI GACGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 343
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 4 cut(s) 14, 309, 410, 492
Hpy8I GTNNAC 1 cut(s) 487
HpyAV CCTTC 2 cut(s) 185, 382
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 271
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 343
LguI GCTCTTC 1 cut(s) 264
LpnPI CCDG 5 cut(s) 111, 322, 340, 363, 390
LweI GCATC 1 cut(s) 19
MabI ACCWGGT 1 cut(s) 376
MaeI CTAG 2 cut(s) 288, 410
MaeII ACGT 1 cut(s) 81
MboII GAAGA 3 cut(s) 281, 313, 397
MfeI CAATTG 1 cut(s) 240
MluCI AATT 5 cut(s) 22, 212, 240, 354, 399
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 4 cut(s) 113, 234, 246, 343
MslI CAYNNNNRTG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 378
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 262, 271
NlaIII CATG 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 264
PcsI WCGNNNNNNNCGW 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspPI GGNCC 1 cut(s) 221
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 378
SetI ASST 8 cut(s) 84, 130, 161, 196, 254, 276, 379, 407
SexAI ACCWGGT 1 cut(s) 376
SfaNI GCATC 1 cut(s) 19
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 5 cut(s) 22, 212, 240, 354, 399
SspMI CTAG 2 cut(s) 288, 410
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 1 cut(s) 84
TasI AATT 5 cut(s) 22, 212, 240, 354, 399
TscAI CASTG 2 cut(s) 334, 487
TspDTI ATGAA 5 cut(s) 17, 224, 314, 438, 448
TspRI CASTG 2 cut(s) 334, 487
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 3 cut(s) 22, 212, 354
XbaI TCTAGA 1 cut(s) 409
XspI CTAG 2 cut(s) 288, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.