Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008530

Physical Location & Seq

Genomic Coordinates Forward (+)

39113893 .. 39116601

Gene Structure 2709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCTTGACCCTCACACAAACGACCACCCTTTTCTTTTTAACCCAGAAAACACGAGCGAAACTACTTACGGTACTTGGCAACCTATCAACTACTCTTCCCGGGCTCAGAAAACAGCTCAGAACTACAAGAGCTGGAAGAGCATGGGCGCTCTTCGTTTAAATGCCGCCGAGGAGGAGTCCCCCTCCGGCGTTTGCTCCCCGCCTCTGTGGAAAACCACCACCACCAGCCCCCCAAAAAGCCCGAACCGGCTTGTGAACAATTACCGGAGTCTTTCGCCGGCTTCTCGGACACAGGCCATTGCCAGAGGACAGAGAGAGCTGATGGAAATGGTGCGCAACATGCCCGAATCGTGTTACGAGCTTTCGCTCAAGGATCTTGTGGAGAGGCCAAGAATTGTGGAGGTTGAGGTGGATGGAGATGATGCGAGCACTGAAGCTTTGGTGAAAAGGGGAGTTGGGAAGGTGAAGAAGAAGAAGAATGATAGGAAGAAGCCAATGGTGGTGAGGAGTGGGAGTTTTGACAGTGGGGGGTTTCTGTTGAAGATGGTGTTTCCAATTTCGTTGGGGTCCAATCAGCAGAATAAGATGGTGATGATCAATAAGAACAAGAAGAACAAGAGTGATTCTGTGGAGGGAGATAGGACAACTGCAAAGGTTTCTCCCAGGCCTAGTGTGGATAAGGATTGGTGGAAGAAGAGAGTTTCTACTTCAGGAGGATCGGGGAGAAGTGAAAGCGGTGTTTCGAGTATTATTAGTGAAAGCATCAAAAGTAGTAGTGGTAGCAGCACTAGCAGTTGTAGCAGCAGAAGCAGCAGCAGGCGCAAGACTGGTGGCTGCTGGTCGTTCATCCTGCTCAAGAAGAAGAGGCACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

32.27

Weight (kDa)

9.96

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21390 AT1G76980 AT1G76980
fragaria_vesca	FvH4_2g15290 FvH4_2g15290 FvH4_2g15290 FvH4_2g15290
malus_domestica	MD05G1009200.v1.1 MD10G1007900.v1.1
prunus_persica	Prupe.8G011500_v2.0.a1
pyrus_communis	pycom05g00480 pycom10g00500
rosa_chinensis	RchiOBHm_Chr6g0278041
rosa_laevigata	RLG00000013246
rosa_multiflora	Rmu_co8365837.1_g000001 Rmu_sc0000791.1_g000012
rosa_roxburghii	Rroxscaffold_7G00190570
rosa_rugosa	Rorug06G0114200
rosa_samantha	Rh6AG224000 Rh6BG228100 Rh6CG230600 Rh6DG221500
rosa_wichuraiana	Rw6G019560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	335
AciI	CCGC	3 cut(s)	165, 200, 735
AclWI	GGATC	2 cut(s)	381, 724
AcuI	CTGAAG	2 cut(s)	453, 693
AfaI	GTAC	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	662
AluBI	AGCT	5 cut(s)	116, 132, 319, 361, 437
AluI	AGCT	5 cut(s)	116, 132, 319, 361, 437
Alw21I	GWGCWC	1 cut(s)	431
AlwI	GGATC	2 cut(s)	381, 724
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	3 cut(s)	294, 386, 665
ApeKI	GCWGC	5 cut(s)	783, 801, 810, 813, 834
AspLEI	GCGC	3 cut(s)	149, 336, 822
AspS9I	GGNCC	1 cut(s)	567
AsuC2I	CCSGG	2 cut(s)	100, 101
AsuHPI	GGTGA	4 cut(s)	454, 475, 514, 601
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	106
BauI	CACGAG	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	5 cut(s)	795, 813, 821, 822, 825
BccI	CCATC	4 cut(s)	316, 407, 538, 580
BciT130I	CCWGG	1 cut(s)	664
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	2 cut(s)	100, 101
BfaI	CTAG	2 cut(s)	669, 789
BfoI	RGCGCY	1 cut(s)	150
BisI	GCNGC	6 cut(s)	165, 784, 802, 811, 814, 835
BlsI	GCNGC	6 cut(s)	166, 785, 803, 812, 815, 836
Bme1390I	CCNGG	3 cut(s)	100, 101, 664
Bme18I	GGWCC	1 cut(s)	567
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	567
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	3 cut(s)	100, 101, 664
BmsI	GCATC	2 cut(s)	412, 771
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpuEI	CTTGAG	2 cut(s)	353, 839
BpuMI	CCSGG	2 cut(s)	100, 101
BsaJI	CCNNGG	3 cut(s)	99, 168, 662
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bse118I	RCCGGY	2 cut(s)	246, 277
Bse1I	ACTGG	1 cut(s)	832
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	664
BseDI	CCNNGG	3 cut(s)	99, 168, 662
BseGI	GGATG	2 cut(s)	418, 846
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	119, 131
BseNI	ACTGG	1 cut(s)	832
BseRI	GAGGAG	3 cut(s)	185, 188, 520
BseXI	GCAGC	5 cut(s)	795, 813, 821, 822, 825
BshFI	GGCC	3 cut(s)	296, 388, 667
BsiHKAI	GWGCWC	1 cut(s)	431
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	5 cut(s)	100, 186, 247, 265, 278
BslFI	GGGAC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	296, 388, 667
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	106, 431
Bsp143I	GATC	3 cut(s)	373, 594, 716
BspACI	CCGC	3 cut(s)	165, 200, 735
BspANI	GGCC	3 cut(s)	296, 388, 667
BspCNI	CTCAG	2 cut(s)	118, 130
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	2 cut(s)	381, 724
BspQI	GCTCTTC	2 cut(s)	131, 156
BsrDI	GCAATG	1 cut(s)	297
BsrFI	RCCGGY	2 cut(s)	246, 277
BsrI	ACTGG	1 cut(s)	832
BssAI	RCCGGY	2 cut(s)	246, 277
BssECI	CCNNGG	3 cut(s)	99, 168, 662
BssMI	GATC	3 cut(s)	373, 594, 716
BssSI	CACGAG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	664
Bst4CI	ACNGT	2 cut(s)	71, 524
Bst6I	CTCTTC	5 cut(s)	100, 131, 156, 689, 857
BstC8I	GCNNGC	3 cut(s)	279, 427, 818
BstDEI	CTNAG	2 cut(s)	105, 117
BstF5I	GGATG	2 cut(s)	418, 846
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	3 cut(s)	149, 336, 822
BstKTI	GATC	3 cut(s)	376, 597, 719
BstMBI	GATC	3 cut(s)	373, 594, 716
BstMWI	GCNNNNNNNGC	7 cut(s)	138, 340, 789, 798, 807, 810, 819
BstNI	CCWGG	1 cut(s)	664
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	98, 99, 662
BstV1I	GCAGC	5 cut(s)	795, 813, 821, 822, 825
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	3 cut(s)	296, 388, 667
BtsCI	GGATG	2 cut(s)	418, 846
BtsIMutI	CAGTG	2 cut(s)	429, 529
Cac8I	GCNNGC	3 cut(s)	279, 427, 818
CfoI	GCGC	3 cut(s)	149, 336, 822
Cfr10I	RCCGGY	2 cut(s)	246, 277
Cfr13I	GGNCC	1 cut(s)	567
Cfr9I	CCCGGG	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	72
CspCI	CAANNNNNGTGG	4 cut(s)	378, 413, 811, 846
CviAII	CATG	2 cut(s)	142, 340
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	105, 117
DpnI	GATC	3 cut(s)	375, 596, 718
DpnII	GATC	3 cut(s)	373, 594, 716
DraI	TTTAAA	1 cut(s)	159
Eam1104I	CTCTTC	5 cut(s)	100, 131, 156, 689, 857
EarI	CTCTTC	5 cut(s)	100, 131, 156, 689, 857
Eco147I	AGGCCT	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	567
Eco57I	CTGAAG	2 cut(s)	453, 693
Eco88I	CYCGRG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	662
EcoT38I	GRGCYC	1 cut(s)	106
FaeI	CATG	2 cut(s)	145, 343
FaiI	YATR	2 cut(s)	143, 341
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	141, 339
FauI	CCCGC	1 cut(s)	207
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	6 cut(s)	165, 784, 802, 811, 814, 835
FokI	GGATG	2 cut(s)	425, 833
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	6 cut(s)	165, 784, 802, 811, 814, 835
FspBI	CTAG	2 cut(s)	669, 789
FspI	TGCGCA	1 cut(s)	335
GlaI	GCGC	3 cut(s)	148, 335, 821
GluI	GCNGC	6 cut(s)	165, 784, 802, 811, 814, 835
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	296, 388, 667
HapII	CCGG	5 cut(s)	100, 186, 247, 265, 278
HhaI	GCGC	3 cut(s)	149, 336, 822
Hin1II	CATG	2 cut(s)	145, 343
Hin6I	GCGC	3 cut(s)	147, 334, 820
HinP1I	GCGC	3 cut(s)	147, 334, 820
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	4 cut(s)	176, 268, 347, 623
HpaII	CCGG	5 cut(s)	100, 186, 247, 265, 278
HphI	GGTGA	4 cut(s)	454, 475, 514, 601
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	108, 120, 288
Hpy188III	TCNNGA	2 cut(s)	711, 856
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	2 cut(s)	71, 524
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	7 cut(s)	138, 340, 789, 798, 807, 810, 819
HpyF3I	CTNAG	2 cut(s)	105, 117
Hsp92II	CATG	2 cut(s)	145, 343
HspAI	GCGC	3 cut(s)	147, 334, 820
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	3 cut(s)	373, 594, 716
LguI	GCTCTTC	2 cut(s)	131, 156
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	5 cut(s)	795, 813, 821, 822, 825
LweI	GCATC	2 cut(s)	412, 771
MaeI	CTAG	2 cut(s)	669, 789
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	3 cut(s)	375, 596, 718
MboI	GATC	3 cut(s)	373, 594, 716
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	106, 431
MluCI	AATT	3 cut(s)	259, 393, 555
MlyI	GAGTC	2 cut(s)	185, 277
MroNI	GCCGGC	1 cut(s)	277
MseI	TTAA	2 cut(s)	39, 158
MspI	CCGG	5 cut(s)	100, 186, 247, 265, 278
MspR9I	CCNGG	3 cut(s)	100, 101, 664
MvaI	CCWGG	1 cut(s)	664
MwoI	GCNNNNNNNGC	7 cut(s)	138, 340, 789, 798, 807, 810, 819
NaeI	GCCGGC	1 cut(s)	279
NciI	CCSGG	2 cut(s)	100, 101
NdeII	GATC	3 cut(s)	373, 594, 716
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	145, 343
NlaIV	GGNNCC	1 cut(s)	568
NmeAIII	GCCGAG	1 cut(s)	193
NsbI	TGCGCA	1 cut(s)	335
NspI	RCATGY	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	667
PciSI	GCTCTTC	2 cut(s)	131, 156
PdiI	GCCGGC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	347, 623
PkrI	GCNGC	6 cut(s)	166, 785, 803, 812, 815, 836
PleI	GAGTC	2 cut(s)	184, 276
PpsI	GAGTC	2 cut(s)	184, 276
Psp6I	CCWGG	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	662
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SapI	GCTCTTC	2 cut(s)	131, 156
SaqAI	TTAA	2 cut(s)	39, 158
SatI	GCNGC	6 cut(s)	165, 784, 802, 811, 814, 835
Sau3AI	GATC	3 cut(s)	373, 594, 716
Sau96I	GGNCC	1 cut(s)	567
SchI	GAGTC	2 cut(s)	185, 277
ScrFI	CCNGG	3 cut(s)	100, 101, 664
SduI	GDGCHC	2 cut(s)	106, 431
SfaNI	GCATC	2 cut(s)	412, 771
SinI	GGWCC	1 cut(s)	567
SmaI	CCCGGG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	368, 854
SmoI	CTYRAG	2 cut(s)	368, 854
Sse9I	AATT	3 cut(s)	259, 393, 555
SseBI	AGGCCT	1 cut(s)	667
SsiI	CCGC	3 cut(s)	165, 200, 735
SspMI	CTAG	2 cut(s)	669, 789
StuI	AGGCCT	1 cut(s)	667
StyD4I	CCNGG	3 cut(s)	98, 99, 662
TaaI	ACNGT	2 cut(s)	71, 524
TaqI	TCGA	1 cut(s)	743
TasI	AATT	3 cut(s)	259, 393, 555
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	347, 623
Tru1I	TTAA	2 cut(s)	39, 158
Tru9I	TTAA	2 cut(s)	39, 158
TscAI	CASTG	2 cut(s)	436, 529
TseI	GCWGC	5 cut(s)	783, 801, 810, 813, 834
TspDTI	ATGAA	1 cut(s)	835
TspMI	CCCGGG	1 cut(s)	99
TspRI	CASTG	2 cut(s)	436, 529
VpaK11BI	GGWCC	1 cut(s)	567
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XmaI	CCCGGG	1 cut(s)	99
XspI	CTAG	2 cut(s)	669, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.