Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008530

Physical Location & Seq

Genomic Coordinates Reverse (-)

1197851 .. 1200586

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1007900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTTGATCCCAACACAAACACACATGAACACCCTTTCCTCTTCAACAGCAGCGCCGACGACCAAATTAAAGGGGACACAACAACCTACGATTCTTGGCAGGCCGTAAATTACGCTTCCCGGGCTCAGAAAACTGCTCAAAATTATGCAAACTACAGGAGTTGGAACAGCATGGACGCCCGTATCAACGTCGAAACTACTCCTGCCGCCCCCTTTGATGAGTCTGACTCGCCGCCGTTGTGGAAGACGACGAACCGCGTGAACAACTACCGGAGTCTTTCCCCGACTTCGAGAACACAAGCGATTGCCAGAGGACAGAGGGAGCTGATGGAGATGGTGAAGAACATGCCCGAGCCATGCTATGAGCTTTCACTGAAGGATCTCGTTGAGCATAAGTATAGGACAATGGGTGGTGAAGAAGAAGATCGAGATCAAGAGGAAGAAGATGATAATAGAAGTACTGAGAACTTGATGATCAGGAGGGGAAATGGAAACGGAAGCGTAAACGAAAGGAAGAACAATGGTGAGAGGAAGAAAATGGTGATGAGGAGTGGGAGTATAGATAGTGGGGGGTTTCTTTTGAAGATGGTTTTGCCAATTTCTTTGGGGGGTAAGAAGAAGAACAATAAGAGCATTAAGAAGAAGGGTGAGTGTTTGGCGGTGGGTGCAAATAGCAATAATATGAGTGCGAAGGTGTCTCCAAAGCCTCAGGGGGTGGATGGATCTGTGAAGGGAGTGGGTGTGGATAATGAATGGTGGAAGATGAAGAGAGTTTCTGTATCAGAAAGGAGTGAAAGTGGTGTTTCTAGTATCAATAGTGGAAGCATGAAAAGCAGTGGCAGCAGCAGCAGCAGCAGTAGTCGTAGCAGCAGAAGCAACAGCAGGCGCAAGAGTAGCGGCTGCTGGTCGTTCATCATGTTCAAGAAGAACAAGAGGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.06

Weight (kDa)

9.57

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21390 AT1G76980 AT1G76980
fragaria_vesca	FvH4_2g15290 FvH4_2g15290 FvH4_2g15290 FvH4_2g15290
malus_domestica	MD05G1009200.v1.1 MD10G1007900.v1.1
prunus_persica	Prupe.8G011500_v2.0.a1
pyrus_communis	pycom05g00480 pycom10g00500
rosa_chinensis	RchiOBHm_Chr6g0278041
rosa_laevigata	RLG00000013246
rosa_multiflora	Rmu_co8365837.1_g000001 Rmu_sc0000791.1_g000012
rosa_roxburghii	Rroxscaffold_7G00190570
rosa_rugosa	Rorug06G0114200
rosa_samantha	Rh6AG224000 Rh6BG228100 Rh6CG230600 Rh6DG221500
rosa_wichuraiana	Rw6G019560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	258
AciI	CCGC	5 cut(s)	207, 233, 256, 659, 897
AclWI	GGATC	3 cut(s)	2, 387, 730
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	460
AgsI	TTSAA	3 cut(s)	46, 583, 922
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	2 cut(s)	325, 367
AluI	AGCT	2 cut(s)	325, 367
Alw26I	GTCTC	1 cut(s)	702
AlwI	GGATC	3 cut(s)	2, 387, 730
Ama87I	CYCGRG	2 cut(s)	120, 350
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	8 cut(s)	51, 840, 843, 846, 849, 852, 867, 900
AspLEI	GCGC	2 cut(s)	56, 888
AsuC2I	CCSGG	2 cut(s)	121, 122
AsuHPI	GGTGA	5 cut(s)	349, 425, 536, 553, 659
AvaI	CYCGRG	2 cut(s)	120, 350
AxyI	CCTNAGG	1 cut(s)	708
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BanII	GRGCYC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	8 cut(s)	63, 852, 855, 858, 861, 864, 879, 887
BccI	CCATC	4 cut(s)	322, 328, 580, 713
BceAI	ACGGC	2 cut(s)	89, 220
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	2 cut(s)	121, 122
BcoDI	GTCTC	1 cut(s)	702
BfaI	CTAG	1 cut(s)	807
BfmI	CTRYAG	1 cut(s)	154
BfoI	RGCGCY	1 cut(s)	57
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	121, 122
BmeT110I	CYCGRG	2 cut(s)	120, 350
BmrFI	CCNGG	2 cut(s)	121, 122
BpiI	GAAGAC	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpuMI	CCSGG	2 cut(s)	121, 122
BsaBI	GATNNNNATC	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	270
BsaXI	ACNNNNNCTCC	6 cut(s)	541, 571, 726, 756, 781, 811
Bse21I	CCTNAGG	1 cut(s)	708
Bse8I	GATNNNNATC	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	724
BseJI	GATNNNNATC	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	140, 453, 722
BseRI	GAGGAG	1 cut(s)	562
BseXI	GCAGC	8 cut(s)	63, 852, 855, 858, 861, 864, 879, 887
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	104
BsiHKCI	CYCGRG	2 cut(s)	120, 350
BsiSI	CCGG	2 cut(s)	121, 271
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	702
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	104
BsoBI	CYCGRG	2 cut(s)	120, 350
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	6 cut(s)	7, 379, 424, 430, 474, 722
BspACI	CCGC	5 cut(s)	207, 233, 256, 659, 897
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	3 cut(s)	139, 454, 721
BspFNI	CGCG	1 cut(s)	258
BspPI	GGATC	3 cut(s)	2, 387, 730
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	6 cut(s)	7, 379, 424, 430, 474, 722
BssNI	GRCGYC	1 cut(s)	177
Bst6I	CTCTTC	2 cut(s)	47, 761
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	102, 884
BstDEI	CTNAG	3 cut(s)	126, 462, 708
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	56, 888
BstKTI	GATC	6 cut(s)	10, 382, 427, 433, 477, 725
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	6 cut(s)	7, 379, 424, 430, 474, 722
BstMWI	GCNNNNNNNGC	9 cut(s)	122, 665, 831, 840, 846, 849, 852, 873, 894
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	119, 120
BstSFI	CTRYAG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	8 cut(s)	63, 852, 855, 858, 861, 864, 879, 887
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	2 cut(s)	379, 722
BstYI	RGATCY	2 cut(s)	379, 722
Bsu36I	CCTNAGG	1 cut(s)	708
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	1 cut(s)	841
BtsIMutI	CAGTG	2 cut(s)	371, 841
Cac8I	GCNNGC	2 cut(s)	102, 884
CfoI	GCGC	2 cut(s)	56, 888
Cfr9I	CCCGGG	1 cut(s)	120
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	6 cut(s)	26, 172, 346, 357, 826, 916
CviJI	RGCY	7 cut(s)	104, 125, 325, 355, 367, 706, 900
CviKI_1	RGCY	7 cut(s)	104, 125, 325, 355, 367, 706, 900
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	3 cut(s)	126, 462, 708
DpnI	GATC	6 cut(s)	9, 381, 426, 432, 476, 724
DpnII	GATC	6 cut(s)	7, 379, 424, 430, 474, 722
Eam1104I	CTCTTC	2 cut(s)	47, 761
EarI	CTCTTC	2 cut(s)	47, 761
Eco24I	GRGCYC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	395
Eco81I	CCTNAGG	1 cut(s)	708
Eco88I	CYCGRG	2 cut(s)	120, 350
EcoT38I	GRGCYC	1 cut(s)	127
FaeI	CATG	6 cut(s)	29, 175, 349, 360, 829, 919
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	6 cut(s)	25, 171, 345, 356, 825, 915
FbaI	TGATCA	1 cut(s)	474
FokI	GGATG	1 cut(s)	731
FriOI	GRGCYC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	807
GlaI	GCGC	2 cut(s)	55, 887
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	2 cut(s)	121, 271
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	56, 888
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	6 cut(s)	29, 175, 349, 360, 829, 919
Hin6I	GCGC	2 cut(s)	54, 886
HinP1I	GCGC	2 cut(s)	54, 886
HinfI	GANTC	4 cut(s)	92, 221, 227, 274
HpaII	CCGG	2 cut(s)	121, 271
HphI	GGTGA	5 cut(s)	349, 425, 536, 553, 659
Hpy166II	GTNNAC	2 cut(s)	262, 505
Hpy188I	TCNGA	3 cut(s)	129, 226, 784
Hpy188III	TCNNGA	5 cut(s)	291, 428, 434, 478, 922
Hpy8I	GTNNAC	2 cut(s)	262, 505
Hpy99I	CGWCG	3 cut(s)	62, 194, 253
HpyAV	CCTTC	5 cut(s)	370, 637, 685, 724, 931
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	149, 668
HpyF10VI	GCNNNNNNNGC	9 cut(s)	122, 665, 831, 840, 846, 849, 852, 873, 894
HpyF3I	CTNAG	3 cut(s)	126, 462, 708
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	6 cut(s)	29, 175, 349, 360, 829, 919
HspAI	GCGC	2 cut(s)	54, 886
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	6 cut(s)	7, 379, 424, 430, 474, 722
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	8 cut(s)	63, 852, 855, 858, 861, 864, 879, 887
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	1 cut(s)	189
MalI	GATC	6 cut(s)	9, 381, 426, 432, 476, 724
MboI	GATC	6 cut(s)	7, 379, 424, 430, 474, 722
MflI	RGATCY	2 cut(s)	379, 722
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	4 cut(s)	66, 109, 142, 597
MlyI	GAGTC	3 cut(s)	221, 230, 283
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	9 cut(s)	50, 305, 312, 430, 474, 522, 540, 717, 927
MseI	TTAA	2 cut(s)	69, 636
MspI	CCGG	2 cut(s)	121, 271
MspR9I	CCNGG	2 cut(s)	121, 122
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	9 cut(s)	122, 665, 831, 840, 846, 849, 852, 873, 894
NciI	CCSGG	2 cut(s)	121, 122
NdeII	GATC	6 cut(s)	7, 379, 424, 430, 474, 722
NlaIII	CATG	6 cut(s)	29, 175, 349, 360, 829, 919
NspI	RCATGY	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	92
PleI	GAGTC	3 cut(s)	221, 229, 282
PpsI	GAGTC	3 cut(s)	221, 229, 282
PsuI	RGATCY	2 cut(s)	379, 722
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	69, 636
Sau3AI	GATC	6 cut(s)	7, 379, 424, 430, 474, 722
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	3 cut(s)	221, 230, 283
ScrFI	CCNGG	2 cut(s)	121, 122
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	5 cut(s)	89, 192, 327, 369, 696
SfcI	CTRYAG	1 cut(s)	154
SmaI	CCCGGG	1 cut(s)	122
Sse9I	AATT	4 cut(s)	66, 109, 142, 597
SsiI	CCGC	5 cut(s)	207, 233, 256, 659, 897
SspMI	CTAG	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	119, 120
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	192, 290, 427
TasI	AATT	4 cut(s)	66, 109, 142, 597
TatI	WGTACW	1 cut(s)	458
TauI	GCSGC	3 cut(s)	209, 235, 900
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	69, 636
Tru9I	TTAA	2 cut(s)	69, 636
TscAI	CASTG	2 cut(s)	378, 841
TseI	GCWGC	8 cut(s)	51, 840, 843, 846, 849, 852, 867, 900
TspDTI	ATGAA	5 cut(s)	42, 765, 779, 842, 901
TspGWI	ACGGA	1 cut(s)	510
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	2 cut(s)	378, 841
XceI	RCATGY	1 cut(s)	349
XmaI	CCCGGG	1 cut(s)	120
XspI	CTAG	1 cut(s)	807
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.