Rh6BG228100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008530
Physical Location & Seq
Forward (+)
43099383 .. 43101987
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG228100.1

Sequence Viewer

Length: 873 bp
ATGCTTGACCCTCACACAAACGACCACCCTTTTCTTTTTAACCCAGAAAACACGAGCGAAACTACTTACGGTACCTGGCAACCTACCAACTACTCTTCCCGGGCTCAGAAAACAGCTCAGAACTACAAGAGCTGGAAGAGCATGGGCGCTCTTCGTTTAAATGCCGCCGAGGAGGAGTCCCCCTCCGGCGTTTGCTCCCCGCCTCTGTGGAAAACCACCACCAGCCCCCCGAAAAGCCCGAACCGGCTTGTGAACAATTACCGGAGTCTTTCGCCGGCTTCTCGGACACAGGCCATTGCCAGAGGACAGAGAGAGATGATGGAAATGGTGCGCAACATGCCCGAATCGTGTTACGAGCTTTCGCTCAAGGATCTTGTGGAGAGGCCAAGAATGGTGGAGGTTGAGGTGGATGGAGATGATGCGAGCACTGAAGCTTTGGTGAAAAGGGGAGTTGGGAAGGTGAAGAAGAAGAATGATAGGAAGAAGCCAATGGTGGTGAGGAGTGGGAGTTTTGACAGTGGGGGGTTTCTGTTGAAGATGGTGTTTCCAATTTCGTTGGGGTCCAATCAGCAGAATAATAAGATGGTGATGATCAATAAGAACAAGAAGAACAAGAGTGATTCTGTGGAGGGAGATAGTACTACTGCAAAGGTTTCTCCCAGGCCTAGTGTGGATAAGGATTGGTGGAAGAAGAGAGTTTCTACTTCAGGAGGATCGGGGAGAAGTGAAAGCGGTGTTTCGAGTTTCATTAGTGAAAGCATCAAAAGTAGTAGTGGTAGCAGCACTAGCAGTTGTAGCAGCAGAAGCAGCAGCAGGCGCAAGACTGGTGGCTGCTGGTCGTTCATCCTGCTCAAGAAGAAGAGGCACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

32.15

Weight (kDa)

9.88

Isoelectric Point (pI)

61.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 332
Acc65I GGTACC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 71
AciI CCGC 3 cut(s) 165, 200, 732
AclWI GGATC 2 cut(s) 378, 721
AcuI CTGAAG 2 cut(s) 450, 690
AfaI GTAC 2 cut(s) 73, 640
AgsI TTSAA 1 cut(s) 535
AjnI CCWGG 2 cut(s) 74, 659
AluBI AGCT 4 cut(s) 116, 132, 358, 434
AluI AGCT 4 cut(s) 116, 132, 358, 434
Alw21I GWGCWC 1 cut(s) 428
AlwI GGATC 2 cut(s) 378, 721
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 3 cut(s) 291, 383, 662
ApeKI GCWGC 5 cut(s) 780, 798, 807, 810, 831
Asp718I GGTACC 1 cut(s) 71
AspLEI GCGC 3 cut(s) 149, 333, 819
AspS9I GGNCC 1 cut(s) 561
AsuC2I CCSGG 2 cut(s) 100, 101
AsuHPI GGTGA 4 cut(s) 451, 472, 508, 598
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 561
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 106
BauI CACGAG 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 428
BbvI GCAGC 5 cut(s) 792, 810, 818, 819, 822
BccI CCATC 4 cut(s) 313, 404, 532, 577
BciT130I CCWGG 2 cut(s) 76, 661
BclI TGATCA 1 cut(s) 591
BcnI CCSGG 2 cut(s) 100, 101
BfaI CTAG 2 cut(s) 666, 786
BfoI RGCGCY 1 cut(s) 150
BisI GCNGC 6 cut(s) 165, 781, 799, 808, 811, 832
BlsI GCNGC 6 cut(s) 166, 782, 800, 809, 812, 833
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 4 cut(s) 76, 100, 101, 661
Bme18I GGWCC 1 cut(s) 561
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 2 cut(s) 73, 562
BmrFI CCNGG 4 cut(s) 76, 100, 101, 661
BmsI GCATC 2 cut(s) 409, 768
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpuEI CTTGAG 2 cut(s) 350, 836
BpuMI CCSGG 2 cut(s) 100, 101
BsaJI CCNNGG 3 cut(s) 99, 168, 659
BsaWI WCCGGW 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 493, 523
Bse118I RCCGGY 2 cut(s) 243, 274
Bse1I ACTGG 1 cut(s) 829
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 2 cut(s) 76, 661
BseDI CCNNGG 3 cut(s) 99, 168, 659
BseGI GGATG 2 cut(s) 415, 843
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 119, 131
BseNI ACTGG 1 cut(s) 829
BseRI GAGGAG 3 cut(s) 185, 188, 514
BseXI GCAGC 5 cut(s) 792, 810, 818, 819, 822
BshFI GGCC 3 cut(s) 293, 385, 664
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 428
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 5 cut(s) 100, 186, 244, 262, 275
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 3 cut(s) 293, 385, 664
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 2 cut(s) 106, 428
Bsp143I GATC 3 cut(s) 370, 591, 713
BspACI CCGC 3 cut(s) 165, 200, 732
BspANI GGCC 3 cut(s) 293, 385, 664
BspCNI CTCAG 2 cut(s) 118, 130
BspLI GGNNCC 2 cut(s) 73, 562
BspPI GGATC 2 cut(s) 378, 721
BspQI GCTCTTC 2 cut(s) 131, 156
BspT107I GGYRCC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 294
BsrFI RCCGGY 2 cut(s) 243, 274
BsrI ACTGG 1 cut(s) 829
BssAI RCCGGY 2 cut(s) 243, 274
BssECI CCNNGG 3 cut(s) 99, 168, 659
BssMI GATC 3 cut(s) 370, 591, 713
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 2 cut(s) 76, 661
Bst4CI ACNGT 2 cut(s) 71, 518
Bst6I CTCTTC 5 cut(s) 100, 131, 156, 686, 854
BstC8I GCNNGC 3 cut(s) 276, 424, 815
BstDEI CTNAG 2 cut(s) 105, 117
BstF5I GGATG 2 cut(s) 415, 843
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 3 cut(s) 149, 333, 819
BstKTI GATC 3 cut(s) 373, 594, 716
BstMBI GATC 3 cut(s) 370, 591, 713
BstMWI GCNNNNNNNGC 7 cut(s) 138, 337, 786, 795, 804, 807, 816
BstNI CCWGG 2 cut(s) 76, 661
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 4 cut(s) 74, 98, 99, 659
BstV1I GCAGC 5 cut(s) 792, 810, 818, 819, 822
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 3 cut(s) 293, 385, 664
BtsCI GGATG 2 cut(s) 415, 843
BtsIMutI CAGTG 2 cut(s) 426, 523
Cac8I GCNNGC 3 cut(s) 276, 424, 815
CfoI GCGC 3 cut(s) 149, 333, 819
Cfr10I RCCGGY 2 cut(s) 243, 274
Cfr13I GGNCC 1 cut(s) 561
Cfr9I CCCGGG 1 cut(s) 99
Csp6I GTAC 2 cut(s) 72, 639
CspCI CAANNNNNGTGG 4 cut(s) 375, 410, 808, 843
CviAII CATG 2 cut(s) 142, 337
CviQI GTAC 2 cut(s) 72, 639
DdeI CTNAG 2 cut(s) 105, 117
DpnI GATC 3 cut(s) 372, 593, 715
DpnII GATC 3 cut(s) 370, 591, 713
DraI TTTAAA 1 cut(s) 159
Eam1104I CTCTTC 5 cut(s) 100, 131, 156, 686, 854
EarI CTCTTC 5 cut(s) 100, 131, 156, 686, 854
Eco147I AGGCCT 1 cut(s) 664
Eco24I GRGCYC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 561
Eco57I CTGAAG 2 cut(s) 450, 690
Eco88I CYCGRG 1 cut(s) 99
EcoRII CCWGG 2 cut(s) 74, 659
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 2 cut(s) 145, 340
FaiI YATR 2 cut(s) 143, 338
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 141, 336
FauI CCCGC 1 cut(s) 207
FbaI TGATCA 1 cut(s) 591
Fnu4HI GCNGC 6 cut(s) 165, 781, 799, 808, 811, 832
FokI GGATG 2 cut(s) 422, 830
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 6 cut(s) 165, 781, 799, 808, 811, 832
FspBI CTAG 2 cut(s) 666, 786
FspI TGCGCA 1 cut(s) 332
GlaI GCGC 3 cut(s) 148, 332, 818
GluI GCNGC 6 cut(s) 165, 781, 799, 808, 811, 832
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 3 cut(s) 293, 385, 664
HapII CCGG 5 cut(s) 100, 186, 244, 262, 275
HhaI GCGC 3 cut(s) 149, 333, 819
Hin1II CATG 2 cut(s) 145, 340
Hin6I GCGC 3 cut(s) 147, 331, 817
HinP1I GCGC 3 cut(s) 147, 331, 817
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 4 cut(s) 176, 265, 344, 620
HpaII CCGG 5 cut(s) 100, 186, 244, 262, 275
HphI GGTGA 4 cut(s) 451, 472, 508, 598
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 108, 120, 285
Hpy188III TCNNGA 2 cut(s) 708, 853
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 2 cut(s) 71, 518
HpyCH4V TGCA 1 cut(s) 647
HpyF10VI GCNNNNNNNGC 7 cut(s) 138, 337, 786, 795, 804, 807, 816
HpyF3I CTNAG 2 cut(s) 105, 117
Hsp92II CATG 2 cut(s) 145, 340
HspAI GCGC 3 cut(s) 147, 331, 817
KpnI GGTACC 1 cut(s) 75
KroI GCCGGC 1 cut(s) 274
KroNI GCCGGC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 591
Kzo9I GATC 3 cut(s) 370, 591, 713
LguI GCTCTTC 2 cut(s) 131, 156
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 5 cut(s) 792, 810, 818, 819, 822
LweI GCATC 2 cut(s) 409, 768
MaeI CTAG 2 cut(s) 666, 786
MaeIII GTNAC 1 cut(s) 350
MalI GATC 3 cut(s) 372, 593, 715
MboI GATC 3 cut(s) 370, 591, 713
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 2 cut(s) 106, 428
MluCI AATT 2 cut(s) 256, 549
MlyI GAGTC 2 cut(s) 185, 274
MroNI GCCGGC 1 cut(s) 274
MseI TTAA 2 cut(s) 39, 158
MspI CCGG 5 cut(s) 100, 186, 244, 262, 275
MspR9I CCNGG 4 cut(s) 76, 100, 101, 661
MvaI CCWGG 2 cut(s) 76, 661
MwoI GCNNNNNNNGC 7 cut(s) 138, 337, 786, 795, 804, 807, 816
NaeI GCCGGC 1 cut(s) 276
NciI CCSGG 2 cut(s) 100, 101
NdeII GATC 3 cut(s) 370, 591, 713
NgoMIV GCCGGC 1 cut(s) 274
NlaIII CATG 2 cut(s) 145, 340
NlaIV GGNNCC 2 cut(s) 73, 562
NmeAIII GCCGAG 1 cut(s) 193
NsbI TGCGCA 1 cut(s) 332
NspI RCATGY 1 cut(s) 340
PceI AGGCCT 1 cut(s) 664
PciSI GCTCTTC 2 cut(s) 131, 156
PdiI GCCGGC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 344, 620
PkrI GCNGC 6 cut(s) 166, 782, 800, 809, 812, 833
PleI GAGTC 2 cut(s) 184, 273
PpsI GAGTC 2 cut(s) 184, 273
Psp6I CCWGG 2 cut(s) 74, 659
PspGI CCWGG 2 cut(s) 74, 659
PspN4I GGNNCC 2 cut(s) 73, 562
PspPI GGNCC 1 cut(s) 561
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 2 cut(s) 73, 640
RsaNI GTAC 2 cut(s) 72, 639
SapI GCTCTTC 2 cut(s) 131, 156
SaqAI TTAA 2 cut(s) 39, 158
SatI GCNGC 6 cut(s) 165, 781, 799, 808, 811, 832
Sau3AI GATC 3 cut(s) 370, 591, 713
Sau96I GGNCC 1 cut(s) 561
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 2 cut(s) 185, 274
ScrFI CCNGG 4 cut(s) 76, 100, 101, 661
SduI GDGCHC 2 cut(s) 106, 428
SfaNI GCATC 2 cut(s) 409, 768
SinI GGWCC 1 cut(s) 561
SmaI CCCGGG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 365, 851
SmoI CTYRAG 2 cut(s) 365, 851
Sse9I AATT 2 cut(s) 256, 549
SseBI AGGCCT 1 cut(s) 664
SsiI CCGC 3 cut(s) 165, 200, 732
SspMI CTAG 2 cut(s) 666, 786
StuI AGGCCT 1 cut(s) 664
StyD4I CCNGG 4 cut(s) 74, 98, 99, 659
TaaI ACNGT 2 cut(s) 71, 518
TaqI TCGA 1 cut(s) 740
TasI AATT 2 cut(s) 256, 549
TatI WGTACW 1 cut(s) 638
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 2 cut(s) 344, 620
Tru1I TTAA 2 cut(s) 39, 158
Tru9I TTAA 2 cut(s) 39, 158
TscAI CASTG 2 cut(s) 433, 523
TseI GCWGC 5 cut(s) 780, 798, 807, 810, 831
TspDTI ATGAA 2 cut(s) 736, 832
TspMI CCCGGG 1 cut(s) 99
TspRI CASTG 2 cut(s) 433, 523
VpaK11BI GGWCC 1 cut(s) 561
XceI RCATGY 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 667
XmaI CCCGGG 1 cut(s) 99
XspI CTAG 2 cut(s) 666, 786
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.