FvH4_2g15290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008530
Physical Location & Seq
Forward (+)
13452576 .. 13455209
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15290.t3

Sequence Viewer

Length: 864 bp
ATGCTTGATCCTCAAACAAACGACCACCCTATTCTTTTTAACCCGGAAAACACGAGTTACGATACTTGGCAACCTATCAACTACTCTTCCCGCGCTCAGAAAACAGCTCAAAACTACAAGAGCTGGAAGAGCATGGGAGCTCTCCGATTAAATGCCGCCGAGGAGGAGTCCCCCTCCGGCGTTTGCTCCCCTCCTCTGTGGAAGACCACCACCACCACCAACCCCCCGCAAAGCCCGACTCGGCTTGTGAACAACTACCGGAGTCTTTCGCCGGCTTCTCGGACACAGGCCATTGCCAGAGGACAGAGGGAGCTGATGGAGATGGTGCGCAACATGCCCGAATCGTGTTACGAGCTTTCGCTCAAGGATCTTGTGGAGAGGCCGAGAATGTTAGAGGTGGATGAAGATAATGCCAGCACTGATGGTTTGGTGAAGAGGGAAGATGGGAAGGTGAAGAAGAAGAATGAGAGGAAGAAGCCAATGGTGATGAGGAGTGGGAGTATGGATAGTGGGGGGTTTCTGTTGAAGATGGTGTTTCCGATTTCGTTGGGGTCGTATAAGAAGAATAATAAGATGGTGAATAAGAATAAGAAGAACAAGAGTGACTGTGTGGAAGAGGAAAGTACTAGTGACAAGCAGGTACCTCCCAGGCCTTGTGTGGATAAAGATTGGTGGAAGAAGAGAGTTTCTGCGTCGGGAGGATCGGGGAGAAGTGAAAGCTGTGCTTCGAGTATTATTAGTGGAAGCATCAAAAGTAGTAGTGGTAGTAGCAGTAGCAGTTGTAGCAGCAGAAGCAGTAGCAGGCGCAAGACTAGTGGCTGCTGGTCGTTCATCGTGCTCAAGAAGAAGAGGCAGCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.08

Weight (kDa)

9.67

Isoelectric Point (pI)

66.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 628
Acc65I GGTACC 1 cut(s) 640
AccB1I GGYRCC 1 cut(s) 640
AccII CGCG 1 cut(s) 93
AciI CCGC 3 cut(s) 91, 156, 227
AclWI GGATC 3 cut(s) 2, 375, 709
AfaI GTAC 2 cut(s) 625, 642
AgsI TTSAA 1 cut(s) 526
AhlI ACTAGT 2 cut(s) 626, 812
AjnI CCWGG 1 cut(s) 647
AluBI AGCT 6 cut(s) 107, 123, 140, 313, 355, 720
AluI AGCT 6 cut(s) 107, 123, 140, 313, 355, 720
Alw21I GWGCWC 2 cut(s) 142, 840
AlwI GGATC 3 cut(s) 2, 375, 709
AoxI GGCC 3 cut(s) 288, 380, 650
ApeKI GCWGC 3 cut(s) 786, 819, 853
Asp718I GGTACC 1 cut(s) 640
AspLEI GCGC 3 cut(s) 95, 330, 807
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 4 cut(s) 442, 463, 496, 589
BanI GGYRCC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 142
BauI CACGAG 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 142, 840
BbvI GCAGC 2 cut(s) 798, 806
BccI CCATC 6 cut(s) 310, 316, 416, 437, 523, 568
BciT130I CCWGG 1 cut(s) 649
BcnI CCSGG 1 cut(s) 44
BcuI ACTAGT 2 cut(s) 626, 812
BfaI CTAG 2 cut(s) 627, 813
BfuAI ACCTGC 1 cut(s) 628
BisI GCNGC 4 cut(s) 156, 787, 820, 854
BlsI GCNGC 4 cut(s) 157, 788, 821, 855
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 44, 649
BmiI GGNNCC 1 cut(s) 642
BmrFI CCNGG 2 cut(s) 44, 649
BmsI GCATC 1 cut(s) 756
BpiI GAAGAC 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuEI CTTGAG 2 cut(s) 347, 824
BpuMI CCSGG 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 159, 647
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bse118I RCCGGY 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 649
BseDI CCNNGG 2 cut(s) 159, 647
BseGI GGATG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 4 cut(s) 176, 179, 183, 505
BseXI GCAGC 2 cut(s) 798, 806
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 3 cut(s) 290, 382, 652
BshNI GGYRCC 1 cut(s) 640
BsiHKAI GWGCWC 2 cut(s) 142, 840
BsiSI CCGG 4 cut(s) 44, 177, 259, 272
BslFI GGGAC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 3 cut(s) 290, 382, 652
Bsp1286I GDGCHC 2 cut(s) 142, 840
Bsp143I GATC 3 cut(s) 7, 367, 701
BspACI CCGC 3 cut(s) 91, 156, 227
BspANI GGCC 3 cut(s) 290, 382, 652
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 642
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 3 cut(s) 2, 375, 709
BspQI GCTCTTC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 159, 647
BssMI GATC 3 cut(s) 7, 367, 701
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 649
Bst4CI ACNGT 1 cut(s) 608
Bst6I CTCTTC 6 cut(s) 91, 122, 428, 609, 674, 842
BstC8I GCNNGC 3 cut(s) 273, 415, 803
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 3 cut(s) 95, 330, 807
BstKTI GATC 3 cut(s) 10, 370, 704
BstMBI GATC 3 cut(s) 7, 367, 701
BstMWI GCNNNNNNNGC 4 cut(s) 129, 334, 783, 792
BstNI CCWGG 1 cut(s) 649
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 42, 647
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 798, 806
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 3 cut(s) 290, 382, 652
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 417
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 3 cut(s) 273, 415, 803
CfoI GCGC 3 cut(s) 95, 330, 807
Cfr10I RCCGGY 1 cut(s) 271
CseI GACGC 1 cut(s) 681
Csp6I GTAC 2 cut(s) 624, 641
CspCI CAANNNNNGTGG 2 cut(s) 796, 831
CviAII CATG 2 cut(s) 133, 334
CviQI GTAC 2 cut(s) 624, 641
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 9, 369, 703
DpnII GATC 3 cut(s) 7, 367, 701
Eam1104I CTCTTC 6 cut(s) 91, 122, 428, 609, 674, 842
EarI CTCTTC 6 cut(s) 91, 122, 428, 609, 674, 842
Ecl136II GAGCTC 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 652
Eco24I GRGCYC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 2 cut(s) 136, 337
FaiI YATR 4 cut(s) 134, 335, 503, 558
FalI AAGNNNNNCTT 2 cut(s) 709, 741
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 132, 333
FauI CCCGC 2 cut(s) 98, 234
Fnu4HI GCNGC 4 cut(s) 156, 787, 820, 854
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 4 cut(s) 156, 787, 820, 854
FspBI CTAG 2 cut(s) 627, 813
FspI TGCGCA 1 cut(s) 329
GlaI GCGC 3 cut(s) 94, 329, 806
GluI GCNGC 4 cut(s) 156, 787, 820, 854
HaeIII GGCC 3 cut(s) 290, 382, 652
HapII CCGG 4 cut(s) 44, 177, 259, 272
HgaI GACGC 1 cut(s) 681
HhaI GCGC 3 cut(s) 95, 330, 807
Hin1II CATG 2 cut(s) 136, 337
Hin6I GCGC 3 cut(s) 93, 328, 805
HinP1I GCGC 3 cut(s) 93, 328, 805
HinfI GANTC 4 cut(s) 167, 238, 262, 341
HpaII CCGG 4 cut(s) 44, 177, 259, 272
HphI GGTGA 4 cut(s) 442, 463, 496, 589
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 4 cut(s) 99, 146, 282, 540
Hpy188III TCNNGA 2 cut(s) 696, 841
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 697
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 1 cut(s) 608
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 334, 783, 792
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 2 cut(s) 136, 337
HspAI GCGC 3 cut(s) 93, 328, 805
KpnI GGTACC 1 cut(s) 644
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Kzo9I GATC 3 cut(s) 7, 367, 701
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 3 cut(s) 137, 191, 310
Lsp1109I GCAGC 2 cut(s) 798, 806
LweI GCATC 1 cut(s) 756
MaeI CTAG 2 cut(s) 627, 813
MaeIII GTNAC 4 cut(s) 56, 347, 602, 629
MalI GATC 3 cut(s) 9, 369, 703
MboI GATC 3 cut(s) 7, 367, 701
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 142, 840
MlyI GAGTC 3 cut(s) 176, 232, 271
MroNI GCCGGC 1 cut(s) 271
MseI TTAA 2 cut(s) 39, 149
MspI CCGG 4 cut(s) 44, 177, 259, 272
MspR9I CCNGG 2 cut(s) 44, 649
MvaI CCWGG 1 cut(s) 649
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 4 cut(s) 129, 334, 783, 792
NaeI GCCGGC 1 cut(s) 273
NciI CCSGG 1 cut(s) 44
NdeII GATC 3 cut(s) 7, 367, 701
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 2 cut(s) 136, 337
NlaIV GGNNCC 1 cut(s) 642
NmeAIII GCCGAG 3 cut(s) 184, 220, 408
NmuCI GTSAC 2 cut(s) 602, 629
NsbI TGCGCA 1 cut(s) 329
NspI RCATGY 1 cut(s) 337
PceI AGGCCT 1 cut(s) 652
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 551
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 4 cut(s) 157, 788, 821, 855
PleI GAGTC 3 cut(s) 175, 232, 270
PpsI GAGTC 3 cut(s) 175, 232, 270
Psp124BI GAGCTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 647
PspGI CCWGG 1 cut(s) 647
PspN4I GGNNCC 1 cut(s) 642
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 2 cut(s) 625, 642
RsaNI GTAC 2 cut(s) 624, 641
SacI GAGCTC 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 39, 149
SatI GCNGC 4 cut(s) 156, 787, 820, 854
Sau3AI GATC 3 cut(s) 7, 367, 701
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 3 cut(s) 176, 232, 271
ScrFI CCNGG 2 cut(s) 44, 649
SduI GDGCHC 2 cut(s) 142, 840
SfaNI GCATC 1 cut(s) 756
SmlI CTYRAG 2 cut(s) 362, 839
SmoI CTYRAG 2 cut(s) 362, 839
SpeI ACTAGT 2 cut(s) 626, 812
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 3 cut(s) 91, 156, 227
SspMI CTAG 2 cut(s) 627, 813
SstI GAGCTC 1 cut(s) 142
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 2 cut(s) 42, 647
TaaI ACNGT 1 cut(s) 608
TaqI TCGA 1 cut(s) 728
TatI WGTACW 1 cut(s) 623
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 39, 149
Tru9I TTAA 2 cut(s) 39, 149
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 2 cut(s) 602, 629
TseI GCWGC 3 cut(s) 786, 819, 853
Tsp45I GTSAC 2 cut(s) 602, 629
TspDTI ATGAA 2 cut(s) 417, 820
TspRI CASTG 1 cut(s) 424
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XspI CTAG 2 cut(s) 627, 813
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.