Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008530

Physical Location & Seq

Genomic Coordinates Reverse (-)

1984548 .. 1988691

Gene Structure 4144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1009200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCTTGATCCCAACACAAACCCACATGAACACCCATTCCTCTTCAACAGTCGCGCCGACGACGACGAAATTAAAAGTGACACAACAACAAACTACGATTCTTGGCATTCCGTAAATTACGCTTCCCGGGCTCCTCAGAAAACTACTAAAAAATATGGAAACCACAGCATGGGAGGCCGGATCAACGTCGATAATACTACTGCTGCCGGTGACGAGTCTGACTCGCCGCCGTTGCGGAAGACGACGAGCCGCGTGAAGAACTACCGGAGTCTGTCCCCGGCTTCGAAAAAACAAGCAATCGCCAGAGGACAGAGGGAGCTCATGGAGATGGTGAAGAACATGCCTGAGTCGTGCTACGAGCTTTCGCTGAAAGATCTCGTTGAGCATAAGTATAGGCCAATGGGTGGCGAAGAAGAAGAAGATCGAAATCAATATCGAGGTCAAGAGGAAGAATACGATGATAGAAGTACTGAGAATTTGGTAAGGAGGGGAAATGGAAACGGAAACGAAAACGAAATGAAGAAAAATGGTGAGAGGAAGAAACTGGTGATGAGGAGTGGGAGTATAGATAGTGGGGGGTTTCTTTTGAAGATGGTTTTGCCAATTTCTTTGGGGGGTAAGAAGAAGAATAATAAGAGCGTTAAGGAGAAGGGTGAGTGTTTGGTGGTGGATGCAAATGGCAATAATATGAGTGCAAAGGTGTCTCCAAAGCCTCAGGGGTTGGATGGATCTGTGAAGGTAGTGGGTGGGGATAATGAATGGTGGAAGATGAAGAGATTTTCTGTATCAGAAAGGAGTGAAAGTGGTGTTTCTAGTATCAATAGTGGAAGCAGAAAAAGCAGTGGCAGCGGTAGCAGCAGCAGTTGTAGCAGCAGAAGCAACAGCAGGCGCAAGAGCAGTGGATGCTGGTCGTTCATCCTGCTCAAGAAGAACAAGAGGCGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

35.12

Weight (kDa)

9.51

Isoelectric Point (pI)

57.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21390 AT1G76980 AT1G76980
fragaria_vesca	FvH4_2g15290 FvH4_2g15290 FvH4_2g15290 FvH4_2g15290
malus_domestica	MD05G1009200.v1.1 MD10G1007900.v1.1
prunus_persica	Prupe.8G011500_v2.0.a1
pyrus_communis	pycom05g00480 pycom10g00500
rosa_chinensis	RchiOBHm_Chr6g0278041
rosa_laevigata	RLG00000013246
rosa_multiflora	Rmu_co8365837.1_g000001 Rmu_sc0000791.1_g000012
rosa_roxburghii	Rroxscaffold_7G00190570
rosa_rugosa	Rorug06G0114200
rosa_samantha	Rh6AG224000 Rh6BG228100 Rh6CG230600 Rh6DG221500
rosa_wichuraiana	Rw6G019560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	169, 404
AccII	CGCG	2 cut(s)	54, 252
AciI	CCGC	5 cut(s)	227, 235, 250, 849, 940
AclWI	GGATC	3 cut(s)	2, 188, 736
AcsI	RAATTY	1 cut(s)	475
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	2 cut(s)	169, 404
AgsI	TTSAA	2 cut(s)	46, 589
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	2 cut(s)	319, 361
AluI	AGCT	2 cut(s)	319, 361
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	708
AlwI	GGATC	3 cut(s)	2, 188, 736
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	2 cut(s)	175, 395
ApeKI	GCWGC	5 cut(s)	203, 846, 855, 858, 870
ApoI	RAATTY	1 cut(s)	475
AspLEI	GCGC	2 cut(s)	56, 891
AsuC2I	CCSGG	3 cut(s)	127, 128, 278
AsuHPI	GGTGA	5 cut(s)	221, 343, 542, 559, 665
AsuII	TTCGAA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	126
AxyI	CCTNAGG	1 cut(s)	714
BanII	GRGCYC	2 cut(s)	133, 321
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	5 cut(s)	190, 858, 867, 870, 882
BccI	CCATC	3 cut(s)	322, 586, 719
BceAI	ACGGC	1 cut(s)	214
BcnI	CCSGG	3 cut(s)	127, 128, 278
BcoDI	GTCTC	1 cut(s)	708
BfaI	CTAG	1 cut(s)	813
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	7 cut(s)	204, 227, 250, 847, 856, 859, 871
BlsI	GCNGC	7 cut(s)	205, 228, 251, 848, 857, 860, 872
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	3 cut(s)	127, 128, 278
BmeT110I	CYCGRG	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	3 cut(s)	127, 128, 278
BmsI	GCATC	2 cut(s)	661, 893
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
Bpu14I	TTCGAA	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	908
BpuMI	CCSGG	3 cut(s)	127, 128, 278
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	126, 276
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	4 cut(s)	547, 577, 787, 817
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 404
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	549
Bse21I	CCTNAGG	1 cut(s)	714
Bse8I	GATNNNNATC	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	126, 276
BseGI	GGATG	4 cut(s)	676, 730, 908, 915
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	169, 404
BseMII	CTCAG	4 cut(s)	149, 336, 462, 728
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	2 cut(s)	123, 568
BseXI	GCAGC	5 cut(s)	190, 858, 867, 870, 882
Bsh1236I	CGCG	2 cut(s)	54, 252
BshFI	GGCC	2 cut(s)	177, 397
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	5 cut(s)	127, 178, 207, 265, 278
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	169, 404
BsmAI	GTCTC	1 cut(s)	708
BsmFI	GGGAC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	177, 397
BsoBI	CYCGRG	1 cut(s)	126
Bsp119I	TTCGAA	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	133, 321
Bsp143I	GATC	5 cut(s)	7, 180, 373, 421, 728
BspACI	CCGC	5 cut(s)	227, 235, 250, 849, 940
BspANI	GGCC	2 cut(s)	177, 397
BspCNI	CTCAG	4 cut(s)	148, 337, 463, 727
BspFNI	CGCG	2 cut(s)	54, 252
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	3 cut(s)	2, 188, 736
BspT104I	TTCGAA	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	126, 276
BssMI	GATC	5 cut(s)	7, 180, 373, 421, 728
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	2 cut(s)	47, 767
BstAPI	GCANNNNNTGC	1 cut(s)	903
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	887
BstDEI	CTNAG	4 cut(s)	135, 345, 471, 714
BstF5I	GGATG	4 cut(s)	676, 730, 908, 915
BstFNI	CGCG	2 cut(s)	54, 252
BstHHI	GCGC	2 cut(s)	56, 891
BstKTI	GATC	5 cut(s)	10, 183, 376, 424, 731
BstMAI	GTCTC	1 cut(s)	708
BstMBI	GATC	5 cut(s)	7, 180, 373, 421, 728
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	125, 126, 276
BstUI	CGCG	2 cut(s)	54, 252
BstV1I	GCAGC	5 cut(s)	190, 858, 867, 870, 882
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	373, 728
BstYI	RGATCY	2 cut(s)	373, 728
Bsu36I	CCTNAGG	1 cut(s)	714
BsuRI	GGCC	2 cut(s)	177, 397
BtsCI	GGATG	4 cut(s)	676, 730, 908, 915
BtsI	GCAGTG	2 cut(s)	847, 904
BtsIMutI	CAGTG	2 cut(s)	847, 904
Cac8I	GCNNGC	1 cut(s)	887
CfoI	GCGC	2 cut(s)	56, 891
Cfr10I	RCCGGY	1 cut(s)	206
Cfr9I	CCCGGG	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	468
CspCI	CAANNNNNGTGG	2 cut(s)	880, 915
CviAII	CATG	4 cut(s)	26, 169, 322, 340
CviJI	RGCY	8 cut(s)	131, 177, 249, 281, 319, 361, 397, 712
CviKI_1	RGCY	8 cut(s)	131, 177, 249, 281, 319, 361, 397, 712
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	4 cut(s)	135, 345, 471, 714
DpnI	GATC	5 cut(s)	9, 182, 375, 423, 730
DpnII	GATC	5 cut(s)	7, 180, 373, 421, 728
Eam1104I	CTCTTC	2 cut(s)	47, 767
EarI	CTCTTC	2 cut(s)	47, 767
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	133, 321
Eco53kI	GAGCTC	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	319
EcoT38I	GRGCYC	2 cut(s)	133, 321
FaeI	CATG	4 cut(s)	29, 172, 325, 343
FaiI	YATR	9 cut(s)	27, 156, 170, 323, 341, 387, 393, 566, 689
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	4 cut(s)	25, 168, 321, 339
FauI	CCCGC	1 cut(s)	933
Fnu4HI	GCNGC	7 cut(s)	204, 227, 250, 847, 856, 859, 871
FokI	GGATG	4 cut(s)	683, 737, 902, 915
FriOI	GRGCYC	2 cut(s)	133, 321
Fsp4HI	GCNGC	7 cut(s)	204, 227, 250, 847, 856, 859, 871
FspBI	CTAG	1 cut(s)	813
GlaI	GCGC	2 cut(s)	55, 890
GluI	GCNGC	7 cut(s)	204, 227, 250, 847, 856, 859, 871
HaeIII	GGCC	2 cut(s)	177, 397
HapII	CCGG	5 cut(s)	127, 178, 207, 265, 278
HhaI	GCGC	2 cut(s)	56, 891
Hin1II	CATG	4 cut(s)	29, 172, 325, 343
Hin6I	GCGC	2 cut(s)	54, 889
HinP1I	GCGC	2 cut(s)	54, 889
HinfI	GANTC	5 cut(s)	98, 215, 221, 268, 347
HpaII	CCGG	5 cut(s)	127, 178, 207, 265, 278
HphI	GGTGA	5 cut(s)	221, 343, 542, 559, 665
Hpy188I	TCNGA	3 cut(s)	138, 220, 790
Hpy188III	TCNNGA	2 cut(s)	443, 925
Hpy99I	CGWCG	5 cut(s)	62, 65, 68, 191, 247
HpyAV	CCTTC	2 cut(s)	643, 730
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	674, 695
HpyF3I	CTNAG	4 cut(s)	135, 345, 471, 714
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	29, 172, 325, 343
HspAI	GCGC	2 cut(s)	54, 889
Kzo9I	GATC	5 cut(s)	7, 180, 373, 421, 728
LmnI	GCTCC	2 cut(s)	136, 316
Lsp1109I	GCAGC	5 cut(s)	190, 858, 867, 870, 882
LweI	GCATC	2 cut(s)	661, 893
MaeI	CTAG	1 cut(s)	813
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	77, 209
MalI	GATC	5 cut(s)	9, 182, 375, 423, 730
MboI	GATC	5 cut(s)	7, 180, 373, 421, 728
MflI	RGATCY	2 cut(s)	373, 728
MhlI	GDGCHC	2 cut(s)	133, 321
MluCI	AATT	4 cut(s)	69, 115, 475, 603
MlyI	GAGTC	4 cut(s)	215, 224, 277, 356
MmeI	TCCRAC	1 cut(s)	702
MseI	TTAA	2 cut(s)	72, 642
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	849
MspI	CCGG	5 cut(s)	127, 178, 207, 265, 278
MspR9I	CCNGG	3 cut(s)	127, 128, 278
Mva1269I	GAATGC	1 cut(s)	106
MvnI	CGCG	2 cut(s)	54, 252
NciI	CCSGG	3 cut(s)	127, 128, 278
NdeII	GATC	5 cut(s)	7, 180, 373, 421, 728
NlaIII	CATG	4 cut(s)	29, 172, 325, 343
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	77, 209
NspI	RCATGY	1 cut(s)	343
NspV	TTCGAA	1 cut(s)	284
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	98
PflMI	CCANNNNNTGG	2 cut(s)	169, 404
PkrI	GCNGC	7 cut(s)	205, 228, 251, 848, 857, 860, 872
PleI	GAGTC	4 cut(s)	215, 223, 276, 355
PpsI	GAGTC	4 cut(s)	215, 223, 276, 355
Psp124BI	GAGCTC	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	373, 728
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	72, 642
SatI	GCNGC	7 cut(s)	204, 227, 250, 847, 856, 859, 871
Sau3AI	GATC	5 cut(s)	7, 180, 373, 421, 728
ScaI	AGTACT	1 cut(s)	469
SchI	GAGTC	4 cut(s)	215, 224, 277, 356
ScrFI	CCNGG	3 cut(s)	127, 128, 278
SduI	GDGCHC	2 cut(s)	133, 321
SetI	ASST	6 cut(s)	189, 321, 363, 442, 702, 741
SfaNI	GCATC	2 cut(s)	661, 893
SfuI	TTCGAA	1 cut(s)	284
SmaI	CCCGGG	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	923
SmoI	CTYRAG	1 cut(s)	923
Sse9I	AATT	4 cut(s)	69, 115, 475, 603
SsiI	CCGC	5 cut(s)	227, 235, 250, 849, 940
SspMI	CTAG	1 cut(s)	813
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	125, 126, 276
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	4 cut(s)	189, 284, 424, 436
TasI	AATT	4 cut(s)	69, 115, 475, 603
TatI	WGTACW	1 cut(s)	467
TauI	GCSGC	2 cut(s)	229, 252
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	72, 642
Tru9I	TTAA	2 cut(s)	72, 642
TscAI	CASTG	2 cut(s)	847, 904
TseFI	GTSAC	2 cut(s)	77, 209
TseI	GCWGC	5 cut(s)	203, 846, 855, 858, 870
Tsp45I	GTSAC	2 cut(s)	77, 209
TspDTI	ATGAA	5 cut(s)	42, 533, 771, 785, 904
TspGWI	ACGGA	2 cut(s)	100, 516
TspMI	CCCGGG	1 cut(s)	126
TspRI	CASTG	2 cut(s)	847, 904
Van91I	CCANNNNNTGG	2 cut(s)	169, 404
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	1 cut(s)	343
XmaI	CCCGGG	1 cut(s)	126
XspI	CTAG	1 cut(s)	813
ZrmI	AGTACT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.