AT1G22230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012941
Physical Location & Seq
Forward (+)
7849776 .. 7851164
1389 bp
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UTR
Exon/CDS
Intron
AT1G22230.1

Sequence Viewer

Length: 945 bp
ATGATCAAAGGAGGAGGAGGAAAGTCTTCTGGTTACTCAGCAGATTTGATGGTTTGTTTCCCATCAAGAGCACATTTGTCTTTACCTTCTAAATCCATTTCTAGCCCTTCTTCTTCCTTTAACCGCCGTCAAAATGCTCCTCACCACCGTCGTAGCATCAGTAAGCTCTCTAGCAGCGGCGGTGGAGTACGTCAGAATCGCGGTGGCGGAAGGGAGGTAGTTGAAGAACCTACGTCGCCGAAAGTCACGTGTGCTGGTCAGATCAAAGTGCGGTCAAGTAAACGCGATGGTGGAGGCAAGAATTGGCAGTCTTTGATGGCGGAGATAGAGAAGATACATAGAAGCAAGTCGGAGAGTAAGTTCTTTGGGATTAAGAGAGATGTCATGGGATTTTTGACTTGCCTCCGCGACTTCGATTTTCGATGTTTTGGTGCGTTTCCTCCGGTTGATATAATCTCTGATGATGAAGAAGAAGACGAGGAAGAGGAAGAGGAGGATGAAGAAGAAGATGAAGATGAAAGTTCAGGGACAGTTTTCTCTAAATGGCTTATGGTTTTACACGAAAAGCAAAACAATGAAGAGTGTGTCGACGGAAAGGAAAACGTTTTTTCGGATGTAGAAACTGCGGTCCCGCCGCCGAACGCGTTGTTGCTGATGCGGTGTAGATCTGCACCGGTTAAGAATTGGTCAGAGGAGAAGAAAGAAGAAACAGAGGAAGGTGATAACAGAGTAAAACAGAGCGGAGAAGAAGAAGAAGAAGAGAAGGACAGAGTGGGAAATAAGAAGGATCTGAGATCATTAATGGAGGAAGAGAAGAAGATGAATTTGGTAGTGATGAATTACGACACAAACTATTACAAACTCTCTAATGATATCGCAAAGGAAACTTGGGTTGTCGGTGGTATTCAAGATCCTCTGTTTCGTAGTCGAAGCTGGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

35.52

Weight (kDa)

5.19

Isoelectric Point (pI)

79.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 741
AccI GTMKAC 1 cut(s) 588
AccII CGCG 4 cut(s) 201, 285, 408, 644
AclI AACGTT 1 cut(s) 603
AclWI GGATC 2 cut(s) 795, 905
AcsI RAATTY 1 cut(s) 823
AcvI CACGTG 1 cut(s) 249
AfaI GTAC 1 cut(s) 189
AflIII ACRYGT 2 cut(s) 248, 642
AgeI ACCGGT 1 cut(s) 673
AgsI TTSAA 2 cut(s) 224, 908
AjuI GAANNNNNNNTTGG 2 cut(s) 809, 841
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 2 cut(s) 166, 933
AluI AGCT 2 cut(s) 166, 933
Alw21I GWGCWC 1 cut(s) 73
AlwI GGATC 2 cut(s) 795, 905
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 823
AseI ATTAAT 1 cut(s) 800
AsiGI ACCGGT 1 cut(s) 673
Asp700I GAANNNNTTC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 2 cut(s) 134, 731
AvaII GGWCC 1 cut(s) 628
BbrPI CACGTG 1 cut(s) 249
BbsI GAAGAC 2 cut(s) 18, 480
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 186
BccI CCATC 4 cut(s) 43, 70, 281, 310
BceAI ACGGC 1 cut(s) 111
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 102, 171
BglII AGATCT 1 cut(s) 665
BisI GCNGC 3 cut(s) 175, 178, 635
BlsI GCNGC 3 cut(s) 176, 179, 636
Bme18I GGWCC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 1 cut(s) 630
BmsI GCATC 2 cut(s) 165, 645
BpiI GAAGAC 2 cut(s) 18, 480
BsaAI YACGTR 1 cut(s) 249
BsaWI WCCGGW 2 cut(s) 442, 673
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bse118I RCCGGY 1 cut(s) 673
BseGI GGATG 2 cut(s) 502, 619
BseMII CTCAG 2 cut(s) 51, 782
BseRI GAGGAG 5 cut(s) 27, 30, 129, 506, 707
BseXI GCAGC 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 654
Bsh1236I CGCG 4 cut(s) 201, 285, 408, 644
BshTI ACCGGT 1 cut(s) 673
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 2 cut(s) 443, 674
BslFI GGGAC 2 cut(s) 541, 614
BsmFI GGGAC 2 cut(s) 541, 614
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 6 cut(s) 3, 261, 665, 787, 794, 910
BspCNI CTCAG 2 cut(s) 50, 783
BspFNI CGCG 4 cut(s) 201, 285, 408, 644
BspLI GGNNCC 1 cut(s) 630
BspPI GGATC 2 cut(s) 795, 905
BsrBI CCGCTC 1 cut(s) 741
BsrFI RCCGGY 1 cut(s) 673
BssAI RCCGGY 1 cut(s) 673
BssMI GATC 6 cut(s) 3, 261, 665, 787, 794, 910
Bst4CI ACNGT 2 cut(s) 149, 532
Bst6I CTCTTC 5 cut(s) 477, 483, 573, 753, 804
BstBAI YACGTR 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 37, 791
BstF5I GGATG 2 cut(s) 502, 619
BstFNI CGCG 4 cut(s) 201, 285, 408, 644
BstKTI GATC 6 cut(s) 6, 264, 668, 790, 797, 913
BstMBI GATC 6 cut(s) 3, 261, 665, 787, 794, 910
BstUI CGCG 4 cut(s) 201, 285, 408, 644
BstV1I GCAGC 1 cut(s) 186
BstV2I GAAGAC 2 cut(s) 18, 480
BstX2I RGATCY 3 cut(s) 665, 787, 910
BstYI RGATCY 3 cut(s) 665, 787, 910
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 2 cut(s) 502, 619
Cfr10I RCCGGY 1 cut(s) 673
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 1 cut(s) 188
CspAI ACCGGT 1 cut(s) 673
CviAII CATG 1 cut(s) 385
CviJI RGCY 4 cut(s) 105, 166, 547, 933
CviKI_1 RGCY 4 cut(s) 105, 166, 547, 933
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 2 cut(s) 37, 791
DpnI GATC 6 cut(s) 5, 263, 667, 789, 796, 912
DpnII GATC 6 cut(s) 3, 261, 665, 787, 794, 910
Eam1104I CTCTTC 5 cut(s) 477, 483, 573, 753, 804
EarI CTCTTC 5 cut(s) 477, 483, 573, 753, 804
EciI GGCGGA 2 cut(s) 222, 335
Eco32I GATATC 1 cut(s) 874
Eco47I GGWCC 1 cut(s) 628
Eco72I CACGTG 1 cut(s) 249
EcoRV GATATC 1 cut(s) 874
FaeI CATG 1 cut(s) 388
FaiI YATR 4 cut(s) 339, 386, 452, 551
FaqI GGGAC 2 cut(s) 541, 614
FatI CATG 1 cut(s) 384
FauI CCCGC 1 cut(s) 639
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 3 cut(s) 175, 178, 635
FokI GGATG 2 cut(s) 509, 626
Fsp4HI GCNGC 3 cut(s) 175, 178, 635
FspBI CTAG 2 cut(s) 102, 171
GluI GCNGC 3 cut(s) 175, 178, 635
HapII CCGG 2 cut(s) 443, 674
Hin1II CATG 1 cut(s) 388
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 1 cut(s) 196
HpaII CCGG 2 cut(s) 443, 674
HphI GGTGA 2 cut(s) 134, 731
Hpy166II GTNNAC 2 cut(s) 281, 589
Hpy188I TCNGA 7 cut(s) 195, 261, 352, 460, 613, 691, 792
Hpy188III TCNNGA 2 cut(s) 66, 908
Hpy8I GTNNAC 2 cut(s) 281, 589
Hpy99I CGWCG 3 cut(s) 153, 238, 593
HpyAV CCTTC 6 cut(s) 96, 117, 204, 710, 757, 778
HpyCH4III ACNGT 2 cut(s) 149, 532
HpyCH4IV ACGT 4 cut(s) 190, 233, 248, 603
HpyCH4V TGCA 1 cut(s) 671
HpyF3I CTNAG 2 cut(s) 37, 791
HpySE526I ACGT 4 cut(s) 190, 233, 248, 603
Hsp92II CATG 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 261, 665, 787, 794, 910
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 6 cut(s) 15, 240, 456, 510, 687, 919
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 2 cut(s) 165, 645
MaeI CTAG 2 cut(s) 102, 171
MaeII ACGT 4 cut(s) 190, 233, 248, 603
MaeIII GTNAC 2 cut(s) 32, 244
MalI GATC 6 cut(s) 5, 263, 667, 789, 796, 912
MbiI CCGCTC 1 cut(s) 741
MboI GATC 6 cut(s) 3, 261, 665, 787, 794, 910
MflI RGATCY 3 cut(s) 665, 787, 910
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 4 cut(s) 301, 682, 823, 838
MluI ACGCGT 1 cut(s) 642
MmeI TCCRAC 1 cut(s) 330
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 4 cut(s) 120, 372, 678, 800
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 2 cut(s) 443, 674
MvnI CGCG 4 cut(s) 201, 285, 408, 644
NdeII GATC 6 cut(s) 3, 261, 665, 787, 794, 910
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 196
PinAI ACCGGT 1 cut(s) 673
PkrI GCNGC 3 cut(s) 176, 179, 636
PmaCI CACGTG 1 cut(s) 249
PmlI CACGTG 1 cut(s) 249
Ppu21I YACGTR 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 800
Psp1406I AACGTT 1 cut(s) 603
PspCI CACGTG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 1 cut(s) 628
PsuI RGATCY 3 cut(s) 665, 787, 910
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SalI GTCGAC 1 cut(s) 587
SaqAI TTAA 4 cut(s) 120, 372, 678, 800
SatI GCNGC 3 cut(s) 175, 178, 635
Sau3AI GATC 6 cut(s) 3, 261, 665, 787, 794, 910
Sau96I GGNCC 1 cut(s) 628
SduI GDGCHC 1 cut(s) 73
SfaNI GCATC 2 cut(s) 165, 645
SinI GGWCC 1 cut(s) 628
Sse9I AATT 4 cut(s) 301, 682, 823, 838
SspMI CTAG 2 cut(s) 102, 171
TaaI ACNGT 2 cut(s) 149, 532
TaiI ACGT 4 cut(s) 193, 236, 251, 606
TaqI TCGA 4 cut(s) 414, 421, 588, 928
TasI AATT 4 cut(s) 301, 682, 823, 838
TauI GCSGC 2 cut(s) 180, 637
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 4 cut(s) 120, 372, 678, 800
Tru9I TTAA 4 cut(s) 120, 372, 678, 800
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 7 cut(s) 480, 513, 525, 531, 591, 836, 851
TspGWI ACGGA 1 cut(s) 606
VpaK11BI GGWCC 1 cut(s) 628
VspI ATTAAT 1 cut(s) 800
XapI RAATTY 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 2 cut(s) 102, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.