Rh7AG481600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012941
Physical Location & Seq
Reverse (-)
67626107 .. 67628500
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG481600.1

Sequence Viewer

Length: 1065 bp
ATGAAGGCAAGAGATGCCAAAGGAGGTCTTTCTGCAGATTTACTGGTATGTTTTCCTTCAAGAACCAATTTAACCCTTATGCCAAAATCCATTTGCAGCCCAGCAAGGTCCTTAGAAGCCAAAAAGCACCACAACAATCACAACCAGCAGCTCATCAAGAGAGGTAGAACCAAAAGCTTTGGCCAGGCCAGTCCTATGTTATGGGCCAAAACCAAGGCAATGGGCTCGGAGATCTCTGAGCCCACGTCGCCAAAAGTCACATGTGCCGGACAGATCAAGGTTCGGCACAAGACTGGCTCGATCAAAAGCTGGCAAACAGTGATGGAGGAGATTGAGAGGATTCACAAGAATAAAAAGCAAAAGAAGCCGAAACCGAACTGGGCGGAGGCACTCGGGTTCAAGAAAGATGTAATGCACTTCCTAACTTGCTTGCGAAGAATCCGATTCGACTTTCGGTGTTTTGGGTCCTTCCCTCAACCAGATATCACTTCTGACGATGAAGACGATGAAGAAGAAGAGGAAGACAGAGAAGAAAACCATGTGGGTACTGTTGAAGGAAGTGAAGGTACTGACGAAAATTCCAGAACGGTTTTTTCTAAATGGTATATGGTTTTACAGGAAAATCAGAGTGATGGTTTTTCCAAACAAGATGGAATTGAGATAGATGATAGGCCTAGTTTCGATGATGACGGATCGACTTCTGCAGTACCCTCAGTTCCACCACCAAATGCTCTGCTGCTAATGAGGTGCAGGTCTGCTCCTGCAAAGAGCTGGTTAGAAGAGAAAGAAGAAGAAAAAAATGATCATGAAGAAGAAGAGGAACAAGAAAAAGAAGAATGCCAGGAAGAAAATGTATCAGAAAAACAAGAGAGAAAAGGCAAAATTACTTTGAAGAGTTTAATGGATGAAGAGAAGATGAAGAAGAAGAACGAGAACCTGGTAGTGATGACATACGGTTCTGATTTGTACAACATTTCAACTGAAATTGCCAAGGAGACATGGGTTGTGGGTGGAATCACTGGAATGAAAGATCCAATTTCGAGGAGTCGAAGTTGGAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

40.39

Weight (kDa)

5.79

Isoelectric Point (pI)

67.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 741
AciI CCGC 1 cut(s) 383
AclWI GGATC 2 cut(s) 700, 1025
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 577
AfaI GTAC 4 cut(s) 547, 568, 708, 968
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 5 cut(s) 60, 400, 554, 892, 978
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 3 cut(s) 183, 840, 936
AluBI AGCT 4 cut(s) 151, 177, 309, 771
AluI AGCT 4 cut(s) 151, 177, 309, 771
Alw26I GTCTC 1 cut(s) 989
AlwI GGATC 2 cut(s) 700, 1025
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 4 cut(s) 181, 186, 204, 671
ApeKI GCWGC 3 cut(s) 96, 148, 736
ApoI RAATTY 1 cut(s) 577
AspS9I GGNCC 3 cut(s) 108, 204, 465
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 2 cut(s) 108, 465
BalI TGGCCA 1 cut(s) 183
BanII GRGCYC 2 cut(s) 227, 243
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
BbsI GAAGAC 2 cut(s) 507, 528
BbvI GCAGC 3 cut(s) 108, 160, 723
BccI CCATC 3 cut(s) 316, 626, 644
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 3 cut(s) 185, 842, 938
BclI TGATCA 1 cut(s) 802
BcoDI GTCTC 1 cut(s) 989
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 2 cut(s) 33, 702
BfuAI ACCTGC 1 cut(s) 741
BglII AGATCT 1 cut(s) 231
BisI GCNGC 3 cut(s) 97, 149, 737
BlsI GCNGC 3 cut(s) 98, 150, 738
Bme1390I CCNGG 3 cut(s) 185, 842, 938
Bme18I GGWCC 2 cut(s) 108, 465
BmeT110I CYCGRG 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 3 cut(s) 108, 204, 465
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 3 cut(s) 185, 842, 938
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 2 cut(s) 507, 528
BsaJI CCNNGG 2 cut(s) 213, 990
BsaXI ACNNNNNCTCC 1 cut(s) 1036
Bse1I ACTGG 5 cut(s) 48, 189, 298, 383, 1024
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 3 cut(s) 185, 842, 938
BseDI CCNNGG 2 cut(s) 213, 990
BseGI GGATG 1 cut(s) 910
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 228, 726
BseNI ACTGG 5 cut(s) 48, 189, 298, 383, 1024
BseRI GAGGAG 2 cut(s) 341, 1057
BseXI GCAGC 3 cut(s) 108, 160, 723
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 769
BshFI GGCC 4 cut(s) 183, 188, 206, 673
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 989
BsmI GAATGC 1 cut(s) 842
BsnI GGCC 4 cut(s) 183, 188, 206, 673
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 227, 243
Bsp1407I TGTACA 1 cut(s) 966
Bsp143I GATC 6 cut(s) 231, 273, 300, 692, 802, 1030
BspACI CCGC 1 cut(s) 383
BspANI GGCC 4 cut(s) 183, 188, 206, 673
BspCNI CTCAG 2 cut(s) 229, 725
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 2 cut(s) 37, 706
BspMI ACCTGC 1 cut(s) 741
BspPI GGATC 2 cut(s) 700, 1025
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 966
BsrI ACTGG 5 cut(s) 48, 189, 298, 383, 1024
BssECI CCNNGG 2 cut(s) 213, 990
BssMI GATC 6 cut(s) 231, 273, 300, 692, 802, 1030
BssT1I CCWWGG 2 cut(s) 213, 990
Bst2UI CCWGG 3 cut(s) 185, 842, 938
Bst4CI ACNGT 4 cut(s) 319, 550, 589, 956
Bst6I CTCTTC 5 cut(s) 510, 774, 810, 887, 903
BstAPI GCANNNNNTGC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 966
BstC8I GCNNGC 2 cut(s) 311, 431
BstDEI CTNAG 3 cut(s) 112, 237, 712
BstF5I GGATG 1 cut(s) 910
BstKTI GATC 6 cut(s) 234, 276, 303, 695, 805, 1033
BstMAI GTCTC 1 cut(s) 989
BstMBI GATC 6 cut(s) 231, 273, 300, 692, 802, 1030
BstMWI GCNNNNNNNGC 3 cut(s) 14, 247, 364
BstNI CCWGG 3 cut(s) 185, 842, 938
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 3 cut(s) 183, 840, 936
BstSFI CTRYAG 2 cut(s) 33, 702
BstV1I GCAGC 3 cut(s) 108, 160, 723
BstV2I GAAGAC 2 cut(s) 507, 528
BstX2I RGATCY 2 cut(s) 231, 1030
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 2 cut(s) 231, 1030
BsuRI GGCC 4 cut(s) 183, 188, 206, 673
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 910
BtsIMutI CAGTG 2 cut(s) 324, 1017
BveI ACCTGC 1 cut(s) 741
Cac8I GCNNGC 2 cut(s) 311, 431
CciI TCATGA 1 cut(s) 805
Cfr13I GGNCC 3 cut(s) 108, 204, 465
CsiI ACCWGGT 1 cut(s) 936
Csp6I GTAC 4 cut(s) 546, 567, 707, 967
CviAII CATG 5 cut(s) 261, 539, 806, 999, 1062
CviQI GTAC 4 cut(s) 546, 567, 707, 967
DdeI CTNAG 3 cut(s) 112, 237, 712
DpnI GATC 6 cut(s) 233, 275, 302, 694, 804, 1032
DpnII GATC 6 cut(s) 231, 273, 300, 692, 802, 1030
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 5 cut(s) 510, 774, 810, 887, 903
EarI CTCTTC 5 cut(s) 510, 774, 810, 887, 903
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 2 cut(s) 213, 990
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 2 cut(s) 227, 243
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 108, 465
Eco88I CYCGRG 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 108, 465
EcoRII CCWGG 3 cut(s) 183, 840, 936
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 213, 990
EcoT38I GRGCYC 2 cut(s) 227, 243
ErhI CCWWGG 2 cut(s) 213, 990
FaeI CATG 5 cut(s) 264, 542, 809, 1002, 1065
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 5 cut(s) 260, 538, 805, 998, 1061
FbaI TGATCA 1 cut(s) 802
Fnu4HI GCNGC 3 cut(s) 97, 149, 737
FokI GGATG 1 cut(s) 917
FriOI GRGCYC 2 cut(s) 227, 243
Fsp4HI GCNGC 3 cut(s) 97, 149, 737
FspBI CTAG 1 cut(s) 675
GluI GCNGC 3 cut(s) 97, 149, 737
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 4 cut(s) 183, 188, 206, 673
HapII CCGG 1 cut(s) 267
Hin1II CATG 5 cut(s) 264, 542, 809, 1002, 1065
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 5 cut(s) 340, 438, 444, 1014, 1045
HpaII CCGG 1 cut(s) 267
Hpy188I TCNGA 7 cut(s) 229, 238, 443, 493, 627, 859, 961
Hpy188III TCNNGA 5 cut(s) 60, 157, 400, 582, 806
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 66, 478, 548, 557
HpyCH4III ACNGT 4 cut(s) 319, 550, 589, 956
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 6 cut(s) 35, 96, 415, 704, 750, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 247, 364
HpyF3I CTNAG 3 cut(s) 112, 237, 712
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 5 cut(s) 264, 542, 809, 1002, 1065
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 6 cut(s) 231, 273, 300, 692, 802, 1030
LmnI GCTCC 1 cut(s) 763
Lsp1109I GCAGC 3 cut(s) 108, 160, 723
LweI GCATC 1 cut(s) 4
MabI ACCWGGT 1 cut(s) 936
MaeI CTAG 1 cut(s) 675
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 256
MalI GATC 6 cut(s) 233, 275, 302, 694, 804, 1032
MboI GATC 6 cut(s) 231, 273, 300, 692, 802, 1030
MflI RGATCY 2 cut(s) 231, 1030
MhlI GDGCHC 2 cut(s) 227, 243
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 6 cut(s) 67, 577, 654, 882, 984, 1035
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 1 cut(s) 1054
MmeI TCCRAC 1 cut(s) 1034
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 2 cut(s) 71, 899
MslI CAYNNNNRTG 1 cut(s) 1022
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 3 cut(s) 185, 842, 938
Mva1269I GAATGC 1 cut(s) 842
MvaI CCWGG 3 cut(s) 185, 842, 938
MwoI GCNNNNNNNGC 3 cut(s) 14, 247, 364
NdeII GATC 6 cut(s) 231, 273, 300, 692, 802, 1030
NlaIII CATG 5 cut(s) 264, 542, 809, 1002, 1065
NlaIV GGNNCC 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 264
PagI TCATGA 1 cut(s) 805
PceI AGGCCT 1 cut(s) 673
PciI ACATGT 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PctI GAATGC 1 cut(s) 842
PfeI GAWTC 4 cut(s) 340, 438, 444, 1014
PkrI GCNGC 3 cut(s) 98, 150, 738
PleI GAGTC 1 cut(s) 1053
PpsI GAGTC 1 cut(s) 1053
PpuMI RGGWCCY 2 cut(s) 108, 465
PscI ACATGT 1 cut(s) 260
Psp5II RGGWCCY 2 cut(s) 108, 465
Psp6I CCWGG 3 cut(s) 183, 840, 936
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 3 cut(s) 183, 840, 936
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 3 cut(s) 108, 204, 465
PspPPI RGGWCCY 2 cut(s) 108, 465
PsrI GAACNNNNNNTAC 2 cut(s) 699, 731
PstI CTGCAG 2 cut(s) 37, 706
PsuI RGATCY 2 cut(s) 231, 1030
RsaI GTAC 4 cut(s) 547, 568, 708, 968
RsaNI GTAC 4 cut(s) 546, 567, 707, 967
RseI CAYNNNNRTG 1 cut(s) 1022
SaqAI TTAA 2 cut(s) 71, 899
SatI GCNGC 3 cut(s) 97, 149, 737
Sau3AI GATC 6 cut(s) 231, 273, 300, 692, 802, 1030
Sau96I GGNCC 3 cut(s) 108, 204, 465
SchI GAGTC 1 cut(s) 1054
ScrFI CCNGG 3 cut(s) 185, 842, 938
SduI GDGCHC 2 cut(s) 227, 243
SexAI ACCWGGT 1 cut(s) 936
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 2 cut(s) 33, 702
SinI GGWCC 2 cut(s) 108, 465
SmiMI CAYNNNNRTG 1 cut(s) 1022
Sse9I AATT 6 cut(s) 67, 577, 654, 882, 984, 1035
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 1 cut(s) 383
SspMI CTAG 1 cut(s) 675
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 3 cut(s) 183, 840, 936
StyI CCWWGG 2 cut(s) 213, 990
TaaI ACNGT 4 cut(s) 319, 550, 589, 956
TaiI ACGT 1 cut(s) 248
TaqI TCGA 6 cut(s) 299, 447, 681, 695, 1040, 1048
TasI AATT 6 cut(s) 67, 577, 654, 882, 984, 1035
TatI WGTACW 1 cut(s) 966
TfiI GAWTC 4 cut(s) 340, 438, 444, 1014
Tru1I TTAA 2 cut(s) 71, 899
Tru9I TTAA 2 cut(s) 71, 899
TscAI CASTG 2 cut(s) 324, 1024
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 3 cut(s) 96, 148, 736
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 7 cut(s) 17, 513, 522, 822, 921, 932, 1040
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 2 cut(s) 324, 1024
VpaK11BI GGWCC 2 cut(s) 108, 465
XapI RAATTY 1 cut(s) 577
XceI RCATGY 1 cut(s) 264
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.