MD08G1180900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012941
Physical Location & Seq
Forward (+)
22394242 .. 22395333
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1180900.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGAAGGGAAGGGAAGCCAAAGGAGCACTCTCAGCTGATCTCTTGGTATGTTTTCCTTCAAGAACCAATCTAAAACTCATGCCAAAGCCAATTTGCAGTCCCGCGAGGCCCTCGGAGCCCAACAACCGCCACCACCACCATCCCCACCACCACCAACAGCTCGTGAAAAAATCGAGCATTGGGAAAAGTGGTCTTGGCCACGCCAGTCCTCTGCTGTGGAAAAAGACTAAGCACGCGGACCCAGAGAACTCCGAGCCCACCTCCCCAAAAGTCACCTGTGCCGGACAAATCAAAGTCCGGCACAGGTCTGGCTCATGCAAAAGCTGGCAAACAGTGATGGAAGAGATAGAGAGAATTCACAACAAAAAACAGAGGAAACAGAAGAGGCCCAATTGGGCTGAGGCTCTTGGGTTCAAGAAAGAAGTCATGCAATTCTTGACTTGCTTGCGAAGCATGAGGTTCGATTTTCGGTGTTTCGGTTCTTTTCCTCACGAATCCGGTATTACTTCCGAGGACGAAGAAGAGGAGGAAGAAGAGAACATAGACCGTCGAGAAAACCATGTGGGTGGTGAGGGAATTAGTGACGGTGGTGACCAGAGTAGCTCAAGCACTGTGTTTTCGAAGTGGTTTATGGTTTTACAGGAAAATCAGAGTAATGGGTTTTGTAAAGAGGACAAGAAAAAGAGAAACTGTACGCCAAATTTCGATGATGATGTCGGAATTGGATCAACTTCCGAAGCTCCGGCAGCGGCCGTTCCGCCGCCGAATGCTCTGTTGCTAATGAGGTGCAGGTCCGCCCCTACAAAAACATGGCTGGAAGAGAAAGAAGAAAAAGATGACGAGGAGGAGGAGGACGACGACGAAGATGAAGAGAAAGAAGGAGAAAATGGAATGGAGAAAGAGGAGAAAAAAGCAAAAGTTACGCTGAGGAGTTTAATCGAGGAAGACAAGCAGAACAAAAAGATGGAGAAGTTGGTGGTGATGGCATATGATTCTGATTTCTACAACATTTCATCAGACATTGCAAAGGAGACGTGGGTTGTTGGTGGATTGAAGGAAGCAATTTCCAGGAGTCGAAGTTGGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

41.31

Weight (kDa)

6.27

Isoelectric Point (pI)

70.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 780
AccII CGCG 2 cut(s) 104, 236
AciI CCGC 7 cut(s) 102, 127, 236, 749, 758, 761, 795
AclWI GGATC 1 cut(s) 733
AcoI YGGCCR 2 cut(s) 196, 750
AcsI RAATTY 2 cut(s) 354, 700
AfaI GTAC 1 cut(s) 694
AgsI TTSAA 3 cut(s) 60, 415, 1054
AjiI CACGTC 1 cut(s) 1035
AjnI CCWGG 1 cut(s) 1067
AluBI AGCT 5 cut(s) 35, 160, 324, 603, 740
AluI AGCT 5 cut(s) 35, 160, 324, 603, 740
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 1025
AlwI GGATC 1 cut(s) 733
AoxI GGCC 4 cut(s) 107, 196, 386, 750
ApeKI GCWGC 1 cut(s) 746
ApoI RAATTY 2 cut(s) 354, 700
AspS9I GGNCC 4 cut(s) 108, 238, 387, 792
AsuHPI GGTGA 4 cut(s) 265, 581, 602, 991
AsuII TTCGAA 1 cut(s) 620
AvaII GGWCC 2 cut(s) 238, 792
BalI TGGCCA 1 cut(s) 198
BanII GRGCYC 2 cut(s) 120, 258
BauI CACGAG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 951
Bbv12I GWGCWC 1 cut(s) 28
BbvCI CCTCAGC 2 cut(s) 399, 926
BbvI GCAGC 1 cut(s) 758
BccI CCATC 4 cut(s) 147, 331, 958, 976
BceAI ACGGC 1 cut(s) 737
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 1 cut(s) 1069
BcoDI GTCTC 1 cut(s) 1025
BfuAI ACCTGC 1 cut(s) 780
BisI GCNGC 3 cut(s) 747, 750, 761
BlsI GCNGC 3 cut(s) 748, 751, 762
Bme1390I CCNGG 1 cut(s) 1069
Bme18I GGWCC 2 cut(s) 238, 792
BmgBI CACGTC 1 cut(s) 1035
BmgT120I GGNCC 4 cut(s) 108, 238, 387, 792
BmiI GGNNCC 2 cut(s) 117, 240
BmrFI CCNGG 1 cut(s) 1069
BpiI GAAGAC 1 cut(s) 951
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu10I CCTNAGC 2 cut(s) 399, 926
Bpu14I TTCGAA 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 589
BsaJI CCNNGG 2 cut(s) 111, 510
BsaWI WCCGGW 1 cut(s) 497
BsaXI ACNNNNNCTCC 1 cut(s) 1063
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 1020
BseBI CCWGG 1 cut(s) 1069
BseDI CCNNGG 2 cut(s) 111, 510
BseGI GGATG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 1020
BseMII CTCAG 3 cut(s) 45, 390, 917
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 6 cut(s) 539, 857, 860, 863, 917, 943
BseX3I CGGCCG 1 cut(s) 750
BseXI GCAGC 1 cut(s) 758
BsgI GTGCAG 1 cut(s) 808
Bsh1236I CGCG 2 cut(s) 104, 236
Bsh1285I CGRYCG 1 cut(s) 753
BshFI GGCC 4 cut(s) 109, 198, 388, 752
BsiEI CGRYCG 1 cut(s) 753
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 4 cut(s) 282, 298, 498, 743
BslFI GGGAC 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 1025
BsmBI CGTCTC 1 cut(s) 1025
BsmFI GGGAC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 4 cut(s) 109, 198, 388, 752
Bsp119I TTCGAA 1 cut(s) 620
Bsp1286I GDGCHC 3 cut(s) 28, 120, 258
Bsp143I GATC 2 cut(s) 37, 725
BspACI CCGC 7 cut(s) 102, 127, 236, 749, 758, 761, 795
BspANI GGCC 4 cut(s) 109, 198, 388, 752
BspCNI CTCAG 3 cut(s) 44, 391, 918
BspFNI CGCG 2 cut(s) 104, 236
BspLI GGNNCC 2 cut(s) 117, 240
BspMI ACCTGC 1 cut(s) 780
BspPI GGATC 1 cut(s) 733
BspT104I TTCGAA 1 cut(s) 620
BsrDI GCAATG 1 cut(s) 1020
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 111, 510
BssMI GATC 2 cut(s) 37, 725
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 1069
Bst4CI ACNGT 5 cut(s) 334, 548, 587, 613, 692
Bst6I CTCTTC 7 cut(s) 336, 377, 516, 528, 813, 864, 1079
BstBI TTCGAA 1 cut(s) 620
BstC8I GCNNGC 3 cut(s) 234, 326, 446
BstDEI CTNAG 4 cut(s) 31, 228, 399, 926
BstEII GGTNACC 1 cut(s) 590
BstF5I GGATG 1 cut(s) 139
BstFNI CGCG 2 cut(s) 104, 236
BstKTI GATC 2 cut(s) 40, 728
BstMAI GTCTC 1 cut(s) 1025
BstMBI GATC 2 cut(s) 37, 725
BstMCI CGRYCG 1 cut(s) 753
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 115, 450, 746
BstNI CCWGG 1 cut(s) 1069
BstPI GGTNACC 1 cut(s) 590
BstSCI CCNGG 1 cut(s) 1067
BstUI CGCG 2 cut(s) 104, 236
BstV1I GCAGC 1 cut(s) 758
BstV2I GAAGAC 1 cut(s) 951
BstXI CCANNNNNNTGG 1 cut(s) 566
BstZI CGGCCG 1 cut(s) 750
BsuRI GGCC 4 cut(s) 109, 198, 388, 752
BtrI CACGTC 1 cut(s) 1035
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 339, 609
BveI ACCTGC 1 cut(s) 780
Cac8I GCNNGC 3 cut(s) 234, 326, 446
Cfr13I GGNCC 4 cut(s) 108, 238, 387, 792
Csp6I GTAC 1 cut(s) 693
CviAII CATG 6 cut(s) 79, 315, 427, 454, 560, 810
CviQI GTAC 1 cut(s) 693
DdeI CTNAG 4 cut(s) 31, 228, 399, 926
DpnI GATC 2 cut(s) 39, 727
DpnII GATC 2 cut(s) 37, 725
EaeI YGGCCR 2 cut(s) 196, 750
EagI CGGCCG 1 cut(s) 750
Eam1104I CTCTTC 7 cut(s) 336, 377, 516, 528, 813, 864, 1079
EarI CTCTTC 7 cut(s) 336, 377, 516, 528, 813, 864, 1079
EciI GGCGGA 2 cut(s) 747, 784
EclXI CGGCCG 1 cut(s) 750
Eco24I GRGCYC 2 cut(s) 120, 258
Eco47I GGWCC 2 cut(s) 238, 792
Eco52I CGGCCG 1 cut(s) 750
Eco91I GGTNACC 1 cut(s) 590
EcoO109I RGGNCCY 1 cut(s) 108
EcoO65I GGTNACC 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 1067
EcoT38I GRGCYC 2 cut(s) 120, 258
Esp3I CGTCTC 1 cut(s) 1025
FaeI CATG 6 cut(s) 82, 318, 430, 457, 563, 813
FaqI GGGAC 1 cut(s) 84
FatI CATG 6 cut(s) 78, 314, 426, 453, 559, 809
FauI CCCGC 1 cut(s) 109
FauNDI CATATG 1 cut(s) 988
Fnu4HI GCNGC 3 cut(s) 747, 750, 761
FokI GGATG 1 cut(s) 126
FriOI GRGCYC 2 cut(s) 120, 258
Fsp4HI GCNGC 3 cut(s) 747, 750, 761
GluI GCNGC 3 cut(s) 747, 750, 761
HaeIII GGCC 4 cut(s) 109, 198, 388, 752
HapII CCGG 4 cut(s) 282, 298, 498, 743
Hin1II CATG 6 cut(s) 82, 318, 430, 457, 563, 813
HinfI GANTC 3 cut(s) 494, 992, 1072
HpaII CCGG 4 cut(s) 282, 298, 498, 743
HphI GGTGA 4 cut(s) 265, 581, 602, 991
Hpy188I TCNGA 8 cut(s) 115, 253, 511, 651, 719, 736, 997, 1018
Hpy188III TCNNGA 6 cut(s) 60, 163, 415, 436, 491, 551
Hpy99I CGWCG 3 cut(s) 552, 860, 863
HpyAV CCTTC 4 cut(s) 3, 66, 872, 1048
HpyCH4III ACNGT 5 cut(s) 334, 548, 587, 613, 692
HpyCH4IV ACGT 1 cut(s) 1034
HpyCH4V TGCA 5 cut(s) 96, 318, 430, 789, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 115, 450, 746
HpyF3I CTNAG 4 cut(s) 31, 228, 399, 926
HpySE526I ACGT 1 cut(s) 1034
Hsp92II CATG 6 cut(s) 82, 318, 430, 457, 563, 813
Kzo9I GATC 2 cut(s) 37, 725
LmnI GCTCC 3 cut(s) 23, 115, 745
Lsp1109I GCAGC 1 cut(s) 758
MaeII ACGT 1 cut(s) 1034
MaeIII GTNAC 4 cut(s) 271, 581, 590, 919
MalI GATC 2 cut(s) 39, 727
MboI GATC 2 cut(s) 37, 725
MfeI CAATTG 1 cut(s) 391
MhlI GDGCHC 3 cut(s) 28, 120, 258
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 8 cut(s) 90, 354, 391, 431, 576, 700, 720, 1062
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 1081
MmeI TCCRAC 2 cut(s) 697, 1061
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 1 cut(s) 935
MslI CAYNNNNRTG 1 cut(s) 564
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 2 cut(s) 35, 749
MspI CCGG 4 cut(s) 282, 298, 498, 743
MspR9I CCNGG 1 cut(s) 1069
MunI CAATTG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 1 cut(s) 1069
MvnI CGCG 2 cut(s) 104, 236
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 115, 450, 746
NdeI CATATG 1 cut(s) 988
NdeII GATC 2 cut(s) 37, 725
NlaIII CATG 6 cut(s) 82, 318, 430, 457, 563, 813
NlaIV GGNNCC 2 cut(s) 117, 240
NmuCI GTSAC 3 cut(s) 271, 581, 590
NspV TTCGAA 1 cut(s) 620
PctI GAATGC 1 cut(s) 772
PfeI GAWTC 2 cut(s) 494, 992
PfoI TCCNGGA 1 cut(s) 1067
PkrI GCNGC 3 cut(s) 748, 751, 762
PleI GAGTC 1 cut(s) 1080
PpsI GAGTC 1 cut(s) 1080
Psp6I CCWGG 1 cut(s) 1067
PspEI GGTNACC 1 cut(s) 590
PspGI CCWGG 1 cut(s) 1067
PspN4I GGNNCC 2 cut(s) 117, 240
PspPI GGNCC 4 cut(s) 108, 238, 387, 792
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 694
RsaNI GTAC 1 cut(s) 693
RseI CAYNNNNRTG 1 cut(s) 564
SaqAI TTAA 1 cut(s) 935
SatI GCNGC 3 cut(s) 747, 750, 761
Sau3AI GATC 2 cut(s) 37, 725
Sau96I GGNCC 4 cut(s) 108, 238, 387, 792
SchI GAGTC 1 cut(s) 1081
ScrFI CCNGG 1 cut(s) 1069
SduI GDGCHC 3 cut(s) 28, 120, 258
SfuI TTCGAA 1 cut(s) 620
SinI GGWCC 2 cut(s) 238, 792
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 604
SmoI CTYRAG 1 cut(s) 604
Sse9I AATT 8 cut(s) 90, 354, 391, 431, 576, 700, 720, 1062
SsiI CCGC 7 cut(s) 102, 127, 236, 749, 758, 761, 795
StyD4I CCNGG 1 cut(s) 1067
TaaI ACNGT 5 cut(s) 334, 548, 587, 613, 692
TaiI ACGT 1 cut(s) 1037
TaqI TCGA 7 cut(s) 173, 462, 550, 620, 705, 939, 1075
TasI AATT 8 cut(s) 90, 354, 391, 431, 576, 700, 720, 1062
TauI GCSGC 2 cut(s) 752, 763
TfiI GAWTC 2 cut(s) 494, 992
Tru1I TTAA 1 cut(s) 935
Tru9I TTAA 1 cut(s) 935
TscAI CASTG 2 cut(s) 339, 616
TseFI GTSAC 3 cut(s) 271, 581, 590
TseI GCWGC 1 cut(s) 746
Tsp45I GTSAC 3 cut(s) 271, 581, 590
TspDTI ATGAA 3 cut(s) 17, 882, 1002
TspRI CASTG 2 cut(s) 339, 616
VpaK11BI GGWCC 2 cut(s) 238, 792
XapI RAATTY 2 cut(s) 354, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.