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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G22230 AT1G78110 |
| fragaria_vesca | FvH4_5g37730 |
| malus_domestica | MD08G1180900.v1.1 MD15G1366500.v1.1 |
| prunus_persica | Prupe.1G514400_v2.0.a1 |
| pyrus_communis | pycom08g15460 pycom15g32860 |
| rosa_chinensis | RchiOBHm_Chr7g0239471 |
| rosa_laevigata | RLG00000000755 |
| rosa_multiflora | Rmu_sc0008652.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00220920 |
| rosa_rugosa | Rorug07G0328100 |
| rosa_samantha | Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700 |
| rosa_wichuraiana | Rw7G040350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 181, 1745 |
| AclWI | GGATC | 2 cut(s) | 497, 1146 |
| AcoI | YGGCCR | 1 cut(s) | 789 |
| AcsI | RAATTY | 5 cut(s) | 190, 668, 859, 999, 1193 |
| AfaI | GTAC | 3 cut(s) | 903, 1183, 1642 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 270, 356 |
| AflII | CTTAAG | 1 cut(s) | 1601 |
| AjnI | CCWGG | 2 cut(s) | 266, 463 |
| AluBI | AGCT | 3 cut(s) | 1301, 1436, 1480 |
| AluI | AGCT | 3 cut(s) | 1301, 1436, 1480 |
| Alw26I | GTCTC | 1 cut(s) | 479 |
| AlwI | GGATC | 2 cut(s) | 497, 1146 |
| AoxI | GGCC | 1 cut(s) | 789 |
| ApeKI | GCWGC | 1 cut(s) | 1301 |
| ApoI | RAATTY | 5 cut(s) | 190, 668, 859, 999, 1193 |
| AspLEI | GCGC | 1 cut(s) | 1705 |
| AspS9I | GGNCC | 2 cut(s) | 1324, 1795 |
| AsuHPI | GGTGA | 2 cut(s) | 419, 1378 |
| AvaII | GGWCC | 2 cut(s) | 1324, 1795 |
| BauI | CACGAG | 2 cut(s) | 1008, 1766 |
| BbsI | GAAGAC | 2 cut(s) | 225, 1625 |
| BbvI | GCAGC | 1 cut(s) | 1288 |
| BccI | CCATC | 4 cut(s) | 140, 717, 1284, 1325 |
| BciT130I | CCWGG | 2 cut(s) | 268, 465 |
| BclI | TGATCA | 3 cut(s) | 496, 1123, 1762 |
| BcoDI | GTCTC | 1 cut(s) | 479 |
| BfaI | CTAG | 3 cut(s) | 869, 996, 1328 |
| BfmI | CTRYAG | 2 cut(s) | 1216, 1314 |
| BfoI | RGCGCY | 1 cut(s) | 1706 |
| BfrI | CTTAAG | 1 cut(s) | 1601 |
| BisI | GCNGC | 1 cut(s) | 1302 |
| BlsI | GCNGC | 1 cut(s) | 1303 |
| Bme1390I | CCNGG | 2 cut(s) | 268, 465 |
| Bme18I | GGWCC | 2 cut(s) | 1324, 1795 |
| BmgT120I | GGNCC | 2 cut(s) | 1324, 1795 |
| BmiI | GGNNCC | 1 cut(s) | 1797 |
| BmrFI | CCNGG | 2 cut(s) | 268, 465 |
| BmrI | ACTGGG | 1 cut(s) | 1794 |
| BmsI | GCATC | 3 cut(s) | 247, 761, 931 |
| BmuI | ACTGGG | 1 cut(s) | 1794 |
| BpiI | GAAGAC | 2 cut(s) | 225, 1625 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 459, 491 |
| BpmI | CTGGAG | 1 cut(s) | 250 |
| BsaBI | GATNNNNATC | 2 cut(s) | 501, 1089 |
| BsaJI | CCNNGG | 1 cut(s) | 370 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 270, 356 |
| Bse1I | ACTGG | 2 cut(s) | 18, 1800 |
| Bse3DI | GCAATG | 1 cut(s) | 465 |
| Bse8I | GATNNNNATC | 2 cut(s) | 501, 1089 |
| BseBI | CCWGG | 2 cut(s) | 268, 465 |
| BseDI | CCNNGG | 1 cut(s) | 370 |
| BseGI | GGATG | 5 cut(s) | 298, 973, 1090, 1664, 1759 |
| BseJI | GATNNNNATC | 2 cut(s) | 501, 1089 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 270, 356 |
| BseMI | GCAATG | 1 cut(s) | 465 |
| BseMII | CTCAG | 3 cut(s) | 645, 971, 1451 |
| BseNI | ACTGG | 2 cut(s) | 18, 1800 |
| BseX3I | CGGCCG | 1 cut(s) | 789 |
| BseXI | GCAGC | 1 cut(s) | 1288 |
| BsgI | GTGCAG | 1 cut(s) | 621 |
| Bsh1285I | CGRYCG | 1 cut(s) | 792 |
| BshFI | GGCC | 1 cut(s) | 791 |
| BsiEI | CGRYCG | 1 cut(s) | 792 |
| BsiSI | CCGG | 2 cut(s) | 792, 1700 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 270, 356 |
| BsmAI | GTCTC | 1 cut(s) | 479 |
| BsmI | GAATGC | 2 cut(s) | 398, 744 |
| BsnI | GGCC | 1 cut(s) | 791 |
| Bsp1407I | TGTACA | 1 cut(s) | 901 |
| Bsp143I | GATC | 5 cut(s) | 496, 502, 1123, 1138, 1762 |
| Bsp19I | CCATGG | 1 cut(s) | 370 |
| BspACI | CCGC | 2 cut(s) | 181, 1745 |
| BspANI | GGCC | 1 cut(s) | 791 |
| BspCNI | CTCAG | 3 cut(s) | 646, 970, 1450 |
| BspHI | TCATGA | 1 cut(s) | 1429 |
| BspLI | GGNNCC | 1 cut(s) | 1797 |
| BspPI | GGATC | 2 cut(s) | 497, 1146 |
| BspQI | GCTCTTC | 1 cut(s) | 945 |
| BspTI | CTTAAG | 1 cut(s) | 1601 |
| BsrDI | GCAATG | 1 cut(s) | 465 |
| BsrGI | TGTACA | 1 cut(s) | 901 |
| BsrI | ACTGG | 2 cut(s) | 18, 1800 |
| BssECI | CCNNGG | 1 cut(s) | 370 |
| BssMI | GATC | 5 cut(s) | 496, 502, 1123, 1138, 1762 |
| BssSI | CACGAG | 2 cut(s) | 1008, 1766 |
| BssT1I | CCWWGG | 1 cut(s) | 370 |
| Bst2BI | CACGAG | 2 cut(s) | 1008, 1766 |
| Bst2UI | CCWGG | 2 cut(s) | 268, 465 |
| Bst4CI | ACNGT | 2 cut(s) | 1315, 1697 |
| Bst6I | CTCTTC | 3 cut(s) | 123, 695, 945 |
| BstAFI | CTTAAG | 1 cut(s) | 1601 |
| BstAUI | TGTACA | 1 cut(s) | 901 |
| BstDEI | CTNAG | 5 cut(s) | 403, 451, 654, 957, 1437 |
| BstDSI | CCRYGG | 1 cut(s) | 370 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 268 |
| BstF5I | GGATG | 5 cut(s) | 298, 973, 1090, 1664, 1759 |
| BstH2I | RGCGCY | 1 cut(s) | 1706 |
| BstHHI | GCGC | 1 cut(s) | 1705 |
| BstKTI | GATC | 5 cut(s) | 499, 505, 1126, 1141, 1765 |
| BstMAI | GTCTC | 1 cut(s) | 479 |
| BstMBI | GATC | 5 cut(s) | 496, 502, 1123, 1138, 1762 |
| BstMCI | CGRYCG | 1 cut(s) | 792 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1307, 1711 |
| BstNI | CCWGG | 2 cut(s) | 268, 465 |
| BstSCI | CCNGG | 2 cut(s) | 266, 463 |
| BstSFI | CTRYAG | 2 cut(s) | 1216, 1314 |
| BstV1I | GCAGC | 1 cut(s) | 1288 |
| BstV2I | GAAGAC | 2 cut(s) | 225, 1625 |
| BstX2I | RGATCY | 1 cut(s) | 502 |
| BstYI | RGATCY | 1 cut(s) | 502 |
| BstZI | CGGCCG | 1 cut(s) | 789 |
| BsuRI | GGCC | 1 cut(s) | 791 |
| BtgI | CCRYGG | 1 cut(s) | 370 |
| BtsCI | GGATG | 5 cut(s) | 298, 973, 1090, 1664, 1759 |
| BtsI | GCAGTG | 1 cut(s) | 609 |
| BtsIMutI | CAGTG | 1 cut(s) | 609 |
| CciI | TCATGA | 1 cut(s) | 1429 |
| CfoI | GCGC | 1 cut(s) | 1705 |
| Cfr13I | GGNCC | 2 cut(s) | 1324, 1795 |
| Csp6I | GTAC | 3 cut(s) | 902, 1182, 1641 |
| CviAII | CATG | 9 cut(s) | 143, 371, 756, 1179, 1391, 1430, 1444, 1655, 1682 |
| CviQI | GTAC | 3 cut(s) | 902, 1182, 1641 |
| DdeI | CTNAG | 5 cut(s) | 403, 451, 654, 957, 1437 |
| DpnI | GATC | 5 cut(s) | 498, 504, 1125, 1140, 1764 |
| DpnII | GATC | 5 cut(s) | 496, 502, 1123, 1138, 1762 |
| EaeI | YGGCCR | 1 cut(s) | 789 |
| EagI | CGGCCG | 1 cut(s) | 789 |
| Eam1104I | CTCTTC | 3 cut(s) | 123, 695, 945 |
| EarI | CTCTTC | 3 cut(s) | 123, 695, 945 |
| EclXI | CGGCCG | 1 cut(s) | 789 |
| Eco130I | CCWWGG | 1 cut(s) | 370 |
| Eco47I | GGWCC | 2 cut(s) | 1324, 1795 |
| Eco52I | CGGCCG | 1 cut(s) | 789 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 268 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1324, 1795 |
| EcoRI | GAATTC | 1 cut(s) | 190 |
| EcoRII | CCWGG | 2 cut(s) | 266, 463 |
| EcoT14I | CCWWGG | 1 cut(s) | 370 |
| EcoT22I | ATGCAT | 1 cut(s) | 1360 |
| ErhI | CCWWGG | 1 cut(s) | 370 |
| FaeI | CATG | 9 cut(s) | 146, 374, 759, 1182, 1394, 1433, 1447, 1658, 1685 |
| FatI | CATG | 9 cut(s) | 142, 370, 755, 1178, 1390, 1429, 1443, 1654, 1681 |
| FauI | CCCGC | 1 cut(s) | 174 |
| FbaI | TGATCA | 3 cut(s) | 496, 1123, 1762 |
| Fnu4HI | GCNGC | 1 cut(s) | 1302 |
| FokI | GGATG | 5 cut(s) | 305, 960, 1097, 1671, 1766 |
| Fsp4HI | GCNGC | 1 cut(s) | 1302 |
| FspBI | CTAG | 3 cut(s) | 869, 996, 1328 |
| GlaI | GCGC | 1 cut(s) | 1704 |
| GluI | GCNGC | 1 cut(s) | 1302 |
| GsuI | CTGGAG | 1 cut(s) | 250 |
| HaeII | RGCGCY | 1 cut(s) | 1706 |
| HaeIII | GGCC | 1 cut(s) | 791 |
| HapII | CCGG | 2 cut(s) | 792, 1700 |
| HhaI | GCGC | 1 cut(s) | 1705 |
| Hin1II | CATG | 9 cut(s) | 146, 374, 759, 1182, 1394, 1433, 1447, 1658, 1685 |
| Hin6I | GCGC | 1 cut(s) | 1703 |
| HinP1I | GCGC | 1 cut(s) | 1703 |
| HincII | GTYRAC | 2 cut(s) | 364, 850 |
| HindII | GTYRAC | 2 cut(s) | 364, 850 |
| HindIII | AAGCTT | 1 cut(s) | 1478 |
| HinfI | GANTC | 7 cut(s) | 234, 413, 422, 880, 983, 1129, 1209 |
| HpaI | GTTAAC | 1 cut(s) | 364 |
| HpaII | CCGG | 2 cut(s) | 792, 1700 |
| HphI | GGTGA | 2 cut(s) | 419, 1378 |
| Hpy166II | GTNNAC | 2 cut(s) | 364, 850 |
| Hpy188I | TCNGA | 6 cut(s) | 378, 589, 655, 960, 1128, 1440 |
| Hpy8I | GTNNAC | 2 cut(s) | 364, 850 |
| HpyAV | CCTTC | 2 cut(s) | 679, 1199 |
| HpyCH4III | ACNGT | 2 cut(s) | 1315, 1697 |
| HpyCH4IV | ACGT | 2 cut(s) | 811, 910 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1307, 1711 |
| HpyF3I | CTNAG | 5 cut(s) | 403, 451, 654, 957, 1437 |
| HpySE526I | ACGT | 2 cut(s) | 811, 910 |
| Hsp92II | CATG | 9 cut(s) | 146, 374, 759, 1182, 1394, 1433, 1447, 1658, 1685 |
| HspAI | GCGC | 1 cut(s) | 1703 |
| Ksp22I | TGATCA | 3 cut(s) | 496, 1123, 1762 |
| KspAI | GTTAAC | 1 cut(s) | 364 |
| Kzo9I | GATC | 5 cut(s) | 496, 502, 1123, 1138, 1762 |
| LguI | GCTCTTC | 1 cut(s) | 945 |
| Lsp1109I | GCAGC | 1 cut(s) | 1288 |
| LweI | GCATC | 3 cut(s) | 247, 761, 931 |
| MaeI | CTAG | 3 cut(s) | 869, 996, 1328 |
| MaeII | ACGT | 2 cut(s) | 811, 910 |
| MaeIII | GTNAC | 1 cut(s) | 713 |
| MalI | GATC | 5 cut(s) | 498, 504, 1125, 1140, 1764 |
| MboI | GATC | 5 cut(s) | 496, 502, 1123, 1138, 1762 |
| MfeI | CAATTG | 1 cut(s) | 989 |
| MflI | RGATCY | 1 cut(s) | 502 |
| MlyI | GAGTC | 1 cut(s) | 431 |
| MmeI | TCCRAC | 3 cut(s) | 50, 1045, 1317 |
| Mph1103I | ATGCAT | 1 cut(s) | 1360 |
| MseI | TTAA | 9 cut(s) | 363, 575, 710, 888, 1320, 1482, 1602, 1707, 1828 |
| MslI | CAYNNNNRTG | 2 cut(s) | 939, 1659 |
| MspA1I | CMGCKG | 1 cut(s) | 181 |
| MspCI | CTTAAG | 1 cut(s) | 1601 |
| MspI | CCGG | 2 cut(s) | 792, 1700 |
| MspR9I | CCNGG | 2 cut(s) | 268, 465 |
| MunI | CAATTG | 1 cut(s) | 989 |
| Mva1269I | GAATGC | 2 cut(s) | 398, 744 |
| MvaI | CCWGG | 2 cut(s) | 268, 465 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1307, 1711 |
| NcoI | CCATGG | 1 cut(s) | 370 |
| NdeII | GATC | 5 cut(s) | 496, 502, 1123, 1138, 1762 |
| NlaIII | CATG | 9 cut(s) | 146, 374, 759, 1182, 1394, 1433, 1447, 1658, 1685 |
| NlaIV | GGNNCC | 1 cut(s) | 1797 |
| NmeAIII | GCCGAG | 1 cut(s) | 767 |
| NmuCI | GTSAC | 1 cut(s) | 713 |
| NsiI | ATGCAT | 1 cut(s) | 1360 |
| PagI | TCATGA | 1 cut(s) | 1429 |
| PciSI | GCTCTTC | 1 cut(s) | 945 |
| PctI | GAATGC | 2 cut(s) | 398, 744 |
| PfeI | GAWTC | 6 cut(s) | 234, 413, 880, 983, 1129, 1209 |
| PfoI | TCCNGGA | 1 cut(s) | 266 |
| PkrI | GCNGC | 1 cut(s) | 1303 |
| PleI | GAGTC | 1 cut(s) | 430 |
| PpsI | GAGTC | 1 cut(s) | 430 |
| PpuMI | RGGWCCY | 2 cut(s) | 1324, 1795 |
| Psp5II | RGGWCCY | 2 cut(s) | 1324, 1795 |
| Psp6I | CCWGG | 2 cut(s) | 266, 463 |
| PspGI | CCWGG | 2 cut(s) | 266, 463 |
| PspN4I | GGNNCC | 1 cut(s) | 1797 |
| PspPI | GGNCC | 2 cut(s) | 1324, 1795 |
| PspPPI | RGGWCCY | 2 cut(s) | 1324, 1795 |
| PsuI | RGATCY | 1 cut(s) | 502 |
| RsaI | GTAC | 3 cut(s) | 903, 1183, 1642 |
| RsaNI | GTAC | 3 cut(s) | 902, 1182, 1641 |
| RseI | CAYNNNNRTG | 2 cut(s) | 939, 1659 |
| SapI | GCTCTTC | 1 cut(s) | 945 |
| SaqAI | TTAA | 9 cut(s) | 363, 575, 710, 888, 1320, 1482, 1602, 1707, 1828 |
| SatI | GCNGC | 1 cut(s) | 1302 |
| Sau3AI | GATC | 5 cut(s) | 496, 502, 1123, 1138, 1762 |
| Sau96I | GGNCC | 2 cut(s) | 1324, 1795 |
| SchI | GAGTC | 1 cut(s) | 431 |
| ScrFI | CCNGG | 2 cut(s) | 268, 465 |
| SfaNI | GCATC | 3 cut(s) | 247, 761, 931 |
| SfcI | CTRYAG | 2 cut(s) | 1216, 1314 |
| SinI | GGWCC | 2 cut(s) | 1324, 1795 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 939, 1659 |
| SmlI | CTYRAG | 1 cut(s) | 1601 |
| SmoI | CTYRAG | 1 cut(s) | 1601 |
| SsiI | CCGC | 2 cut(s) | 181, 1745 |
| SspI | AATATT | 2 cut(s) | 22, 620 |
| SspMI | CTAG | 3 cut(s) | 869, 996, 1328 |
| StyD4I | CCNGG | 2 cut(s) | 266, 463 |
| StyI | CCWWGG | 1 cut(s) | 370 |
| TaaI | ACNGT | 2 cut(s) | 1315, 1697 |
| TaiI | ACGT | 2 cut(s) | 814, 913 |
| TaqI | TCGA | 3 cut(s) | 748, 1452, 1809 |
| TatI | WGTACW | 3 cut(s) | 901, 1181, 1640 |
| TfiI | GAWTC | 6 cut(s) | 234, 413, 880, 983, 1129, 1209 |
| Tru1I | TTAA | 9 cut(s) | 363, 575, 710, 888, 1320, 1482, 1602, 1707, 1828 |
| Tru9I | TTAA | 9 cut(s) | 363, 575, 710, 888, 1320, 1482, 1602, 1707, 1828 |
| TscAI | CASTG | 1 cut(s) | 609 |
| TseFI | GTSAC | 1 cut(s) | 713 |
| TseI | GCWGC | 1 cut(s) | 1301 |
| Tsp45I | GTSAC | 1 cut(s) | 713 |
| TspGWI | ACGGA | 1 cut(s) | 1705 |
| TspRI | CASTG | 1 cut(s) | 609 |
| Vha464I | CTTAAG | 1 cut(s) | 1601 |
| VpaK11BI | GGWCC | 2 cut(s) | 1324, 1795 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 268 |
| XapI | RAATTY | 5 cut(s) | 190, 668, 859, 999, 1193 |
| XbaI | TCTAGA | 1 cut(s) | 995 |
| XspI | CTAG | 3 cut(s) | 869, 996, 1328 |
| Zsp2I | ATGCAT | 1 cut(s) | 1360 |