FvH4_5g37730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012941
Physical Location & Seq
Reverse (-)
27780965 .. 27782020
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37730.t1

Sequence Viewer

Length: 1056 bp
ATGAAGGGAAGAGATGCCAAAGGAGCTCTTTCTGCAGATTTACTGGTATGTTTTCCTTCAAGGACCAGTTTAACCCTTATGCCAAAATCCATTTGCAGCCCAGCAAGGTCCTTAGAAGCCAAAAAGCACCACATCAATCACAACCAGCAGCTCGTCAAGAGAGGCAGAACCAAAAGCTTTAGCCAGGGCAGTCCCATGTTATGGGCCAAAACCAAGGCAATGGGCGCGGAGATATCCGAGCCTACGTCGCCAAAAGTCACATGTGCCGGACAGATCAAGGTCCGGCACAAGACTGGCTCGATCAAAAGCTGGCAATCAGTGATGGAGGAGATTGAGAGGATTCACAAGAATAAGAAGCACAAGAAGACGAAACCGAGTTGGGCCGAGGCTCTCGGGTTCAAGAAAGATGTAATGCACTTCCTGACGTGCTTGCGAAGAATCCGATTCGACTTCCGGTGTTTTGGGTCCTTCCCTCAAGCAGATATCACGTCTGACGATGAAGACGATGATGAAGAAGAAGAGGAAGACAGAGAAGAAAACCATGCGGGCGTTGAAGGAAGTGAAGGCACTGACGAAAATTCCAGAACGGTTTTTTCGAAATGGTATATGGTTTTACAGGAAAACCAGAGTGATGGTTTTTGCAAACAAGATAGAATTCAGAGAGATGATAAGGCTAGTTTCGGGGACGATGGATCGACTTCTGAAGTACCCTCAGTTCCACCACCAAATGCTCTGCTTCTAATGAGGTGCAGGTCTGCTCCTGCAAAGAGCTGGTTAGAAGAGAAAGAAGAAGAAGAAGAAAACAATGATCATGAAGAAAAAGAAGAGAAAGAAGAATGCCAGGAAGCAAATATATCTGAAAAACAAGAGAGAAAAGGCAAAATTACTTTGAAGAGCTTAATGGATGAAGAAAAAATGAAGAAGATGAACGAGAACCTGGTGGTGATGACATACGGTTCTGATTTGTACAACATTTCAACTGAGATTGCTAAGGAGACATGGGTTGTTGGTGGAATGAAAGATCCGATTTCGAGGAGTCGAAGTTGGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

40.11

Weight (kDa)

6.21

Isoelectric Point (pI)

69.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 741
AccB7I CCANNNNNTGG 1 cut(s) 201
AccII CGCG 1 cut(s) 227
AciI CCGC 2 cut(s) 227, 545
AclWI GGATC 2 cut(s) 700, 1016
AcsI RAATTY 2 cut(s) 577, 654
AcuI CTGAAG 1 cut(s) 723
AfaI GTAC 2 cut(s) 708, 968
AfiI CCNNNNNNNGG 1 cut(s) 201
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 5 cut(s) 60, 400, 554, 892, 978
AjiI CACGTC 2 cut(s) 426, 489
AjnI CCWGG 3 cut(s) 183, 840, 936
AluBI AGCT 6 cut(s) 26, 151, 177, 309, 771, 897
AluI AGCT 6 cut(s) 26, 151, 177, 309, 771, 897
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 989
AlwI GGATC 2 cut(s) 700, 1016
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 2 cut(s) 204, 381
ApeKI GCWGC 2 cut(s) 96, 148
ApoI RAATTY 2 cut(s) 577, 654
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 6 cut(s) 63, 108, 204, 280, 381, 465
AsuHPI GGTGA 1 cut(s) 955
AsuII TTCGAA 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 4 cut(s) 63, 108, 280, 465
BanII GRGCYC 1 cut(s) 28
BbsI GAAGAC 3 cut(s) 371, 507, 531
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 108, 160
BccI CCATC 3 cut(s) 316, 626, 683
BciT130I CCWGG 3 cut(s) 185, 842, 938
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 1 cut(s) 989
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 741
BisI GCNGC 2 cut(s) 97, 149
BlsI GCNGC 2 cut(s) 98, 150
Bme1390I CCNGG 3 cut(s) 185, 842, 938
Bme18I GGWCC 4 cut(s) 63, 108, 280, 465
BmeT110I CYCGRG 1 cut(s) 392
BmgBI CACGTC 2 cut(s) 426, 489
BmgT120I GGNCC 6 cut(s) 63, 108, 204, 280, 381, 465
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 3 cut(s) 185, 842, 938
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 3 cut(s) 371, 507, 531
Bpu10I CCTNAGC 1 cut(s) 990
Bpu14I TTCGAA 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 459
BsaJI CCNNGG 3 cut(s) 184, 213, 384
BsaWI WCCGGW 1 cut(s) 453
BsaXI ACNNNNNCTCC 1 cut(s) 1027
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 3 cut(s) 48, 66, 298
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 3 cut(s) 185, 842, 938
BseDI CCNNGG 3 cut(s) 184, 213, 384
BseGI GGATG 1 cut(s) 910
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 726, 972
BseNI ACTGG 3 cut(s) 48, 66, 298
BseRI GAGGAG 2 cut(s) 341, 1048
BseXI GCAGC 2 cut(s) 108, 160
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 769
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 2 cut(s) 206, 383
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 3 cut(s) 267, 283, 454
BslFI GGGAC 2 cut(s) 177, 698
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 989
BsmFI GGGAC 2 cut(s) 177, 698
BsmI GAATGC 1 cut(s) 842
BsnI GGCC 2 cut(s) 206, 383
BsoBI CYCGRG 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 28
Bsp1407I TGTACA 1 cut(s) 966
Bsp143I GATC 5 cut(s) 273, 300, 692, 808, 1021
BspACI CCGC 2 cut(s) 227, 545
BspANI GGCC 2 cut(s) 206, 383
BspCNI CTCAG 2 cut(s) 725, 973
BspFNI CGCG 1 cut(s) 227
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 741
BspPI GGATC 2 cut(s) 700, 1016
BspQI GCTCTTC 1 cut(s) 887
BspT104I TTCGAA 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 966
BsrI ACTGG 3 cut(s) 48, 66, 298
BssECI CCNNGG 3 cut(s) 184, 213, 384
BssMI GATC 5 cut(s) 273, 300, 692, 808, 1021
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 3 cut(s) 185, 842, 938
Bst4CI ACNGT 2 cut(s) 589, 956
Bst6I CTCTTC 6 cut(s) 4, 513, 774, 819, 887, 1043
BstAUI TGTACA 1 cut(s) 966
BstBI TTCGAA 1 cut(s) 596
BstC8I GCNNGC 3 cut(s) 311, 431, 547
BstDEI CTNAG 4 cut(s) 112, 712, 981, 990
BstF5I GGATG 1 cut(s) 910
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 5 cut(s) 276, 303, 695, 811, 1024
BstMAI GTCTC 1 cut(s) 989
BstMBI GATC 5 cut(s) 273, 300, 692, 808, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 224, 247
BstNI CCWGG 3 cut(s) 185, 842, 938
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 3 cut(s) 183, 840, 936
BstSFI CTRYAG 1 cut(s) 33
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 108, 160
BstV2I GAAGAC 3 cut(s) 371, 507, 531
BstX2I RGATCY 1 cut(s) 1021
BstXI CCANNNNNNTGG 2 cut(s) 220, 632
BstYI RGATCY 1 cut(s) 1021
BsuRI GGCC 2 cut(s) 206, 383
BtrI CACGTC 2 cut(s) 426, 489
BtsCI GGATG 1 cut(s) 910
BtsIMutI CAGTG 2 cut(s) 324, 567
BveI ACCTGC 1 cut(s) 741
Cac8I GCNNGC 3 cut(s) 311, 431, 547
CciI TCATGA 1 cut(s) 811
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 6 cut(s) 63, 108, 204, 280, 381, 465
CsiI ACCWGGT 1 cut(s) 936
Csp6I GTAC 2 cut(s) 707, 967
CviAII CATG 5 cut(s) 196, 261, 542, 812, 999
CviQI GTAC 2 cut(s) 707, 967
DdeI CTNAG 4 cut(s) 112, 712, 981, 990
DpnI GATC 5 cut(s) 275, 302, 694, 810, 1023
DpnII GATC 5 cut(s) 273, 300, 692, 808, 1021
Eam1104I CTCTTC 6 cut(s) 4, 513, 774, 819, 887, 1043
EarI CTCTTC 6 cut(s) 4, 513, 774, 819, 887, 1043
Ecl136II GAGCTC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 28
Eco32I GATATC 2 cut(s) 234, 484
Eco47I GGWCC 4 cut(s) 63, 108, 280, 465
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 26
EcoO109I RGGNCCY 2 cut(s) 108, 465
EcoRI GAATTC 1 cut(s) 654
EcoRII CCWGG 3 cut(s) 183, 840, 936
EcoRV GATATC 2 cut(s) 234, 484
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 5 cut(s) 199, 264, 545, 815, 1002
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 2 cut(s) 177, 698
FatI CATG 5 cut(s) 195, 260, 541, 811, 998
FauI CCCGC 1 cut(s) 538
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 2 cut(s) 97, 149
FokI GGATG 1 cut(s) 917
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 97, 149
FspBI CTAG 1 cut(s) 675
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 97, 149
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 2 cut(s) 206, 383
HapII CCGG 3 cut(s) 267, 283, 454
HhaI GCGC 1 cut(s) 227
Hin1II CATG 5 cut(s) 199, 264, 545, 815, 1002
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 4 cut(s) 340, 438, 444, 1036
HpaII CCGG 3 cut(s) 267, 283, 454
HphI GGTGA 1 cut(s) 955
Hpy188I TCNGA 8 cut(s) 238, 443, 493, 660, 703, 859, 961, 1026
Hpy188III TCNNGA 5 cut(s) 157, 400, 421, 582, 812
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 66, 478, 548, 557
HpyCH4III ACNGT 2 cut(s) 589, 956
HpyCH4IV ACGT 3 cut(s) 245, 425, 488
HpyCH4V TGCA 6 cut(s) 35, 96, 415, 642, 750, 764
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 224, 247
HpyF3I CTNAG 4 cut(s) 112, 712, 981, 990
HpySE526I ACGT 3 cut(s) 245, 425, 488
Hsp92II CATG 5 cut(s) 199, 264, 545, 815, 1002
HspAI GCGC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 5 cut(s) 273, 300, 692, 808, 1021
LguI GCTCTTC 1 cut(s) 887
LmnI GCTCC 2 cut(s) 23, 763
Lsp1109I GCAGC 2 cut(s) 108, 160
LweI GCATC 1 cut(s) 4
MabI ACCWGGT 1 cut(s) 936
MaeI CTAG 1 cut(s) 675
MaeII ACGT 3 cut(s) 245, 425, 488
MaeIII GTNAC 1 cut(s) 256
MalI GATC 5 cut(s) 275, 302, 694, 810, 1023
MboI GATC 5 cut(s) 273, 300, 692, 808, 1021
MflI RGATCY 1 cut(s) 1021
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 3 cut(s) 577, 654, 882
MlyI GAGTC 1 cut(s) 1045
MmeI TCCRAC 1 cut(s) 1025
MnlI CCTC 9 cut(s) 155, 319, 330, 379, 483, 514, 721, 738, 1026
MseI TTAA 2 cut(s) 71, 899
MspI CCGG 3 cut(s) 267, 283, 454
MspR9I CCNGG 3 cut(s) 185, 842, 938
Mva1269I GAATGC 1 cut(s) 842
MvaI CCWGG 3 cut(s) 185, 842, 938
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 224, 247
NdeII GATC 5 cut(s) 273, 300, 692, 808, 1021
NlaIII CATG 5 cut(s) 199, 264, 545, 815, 1002
NlaIV GGNNCC 1 cut(s) 466
NmeAIII GCCGAG 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 264
NspV TTCGAA 1 cut(s) 596
PagI TCATGA 1 cut(s) 811
PciI ACATGT 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 887
PcsI WCGNNNNNNNCGW 2 cut(s) 501, 593
PctI GAATGC 1 cut(s) 842
PfeI GAWTC 3 cut(s) 340, 438, 444
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 2 cut(s) 98, 150
PleI GAGTC 1 cut(s) 1044
PpsI GAGTC 1 cut(s) 1044
PpuMI RGGWCCY 2 cut(s) 108, 465
PscI ACATGT 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 28
Psp5II RGGWCCY 2 cut(s) 108, 465
Psp6I CCWGG 3 cut(s) 183, 840, 936
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 3 cut(s) 183, 840, 936
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 6 cut(s) 63, 108, 204, 280, 381, 465
PspPPI RGGWCCY 2 cut(s) 108, 465
PsrI GAACNNNNNNTAC 2 cut(s) 699, 731
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 1021
RsaI GTAC 2 cut(s) 708, 968
RsaNI GTAC 2 cut(s) 707, 967
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 887
SaqAI TTAA 2 cut(s) 71, 899
SatI GCNGC 2 cut(s) 97, 149
Sau3AI GATC 5 cut(s) 273, 300, 692, 808, 1021
Sau96I GGNCC 6 cut(s) 63, 108, 204, 280, 381, 465
SchI GAGTC 1 cut(s) 1045
ScrFI CCNGG 3 cut(s) 185, 842, 938
SduI GDGCHC 1 cut(s) 28
SexAI ACCWGGT 1 cut(s) 936
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 596
SinI GGWCC 4 cut(s) 63, 108, 280, 465
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
Sse9I AATT 3 cut(s) 577, 654, 882
SsiI CCGC 2 cut(s) 227, 545
SspMI CTAG 1 cut(s) 675
SstI GAGCTC 1 cut(s) 28
StyD4I CCNGG 3 cut(s) 183, 840, 936
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 589, 956
TaiI ACGT 3 cut(s) 248, 428, 491
TaqI TCGA 6 cut(s) 299, 447, 596, 695, 1031, 1039
TasI AATT 3 cut(s) 577, 654, 882
TatI WGTACW 1 cut(s) 966
TfiI GAWTC 3 cut(s) 340, 438, 444
Tru1I TTAA 2 cut(s) 71, 899
Tru9I TTAA 2 cut(s) 71, 899
TscAI CASTG 2 cut(s) 324, 574
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 96, 148
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 8 cut(s) 17, 513, 525, 828, 921, 932, 941, 1031
TspRI CASTG 2 cut(s) 324, 574
Van91I CCANNNNNTGG 1 cut(s) 201
VpaK11BI GGWCC 4 cut(s) 63, 108, 280, 465
XapI RAATTY 2 cut(s) 577, 654
XceI RCATGY 1 cut(s) 264
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.