pycom15g32860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012941
Physical Location & Seq
Forward (+)
32125882 .. 32127009
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g32860.1

Sequence Viewer

Length: 1128 bp
ATGAAGCGAAGGGAGGCCAAGGGAGCACTCTCAGCTGATCTCTTAGTATGTTTTCCTTCAAGAACCCATCTAAAACTCATGCCGAAACCAATTTGCAGTCCGGCAAGGTCCTCGGAGCCCAACTGCCGCCACCCCCACCACCACCACCAGCATCAGCATCAACTCGTAAAAAAGTCGAGCATTGGGAGGAGCGGTCTTGGTCATGCTAGTCCTCTGATGTGGGCCAAGACCAAGTCCGTGGGTTCGGAAATCTCTGAGCCCACGTCCCCAAAAGTCACATGTGCCGGACAAATCAAAGTCCGGCACAAGTCAGGCTCGTGCAAAAGCTGGCAATCAGTGATGGAAGAGATTGAGAGAATTCACAACAACAAAAAACAGAGGAAACAGAGGAGACCCAATTGGGCTGAGGCTTTCGGGTTCAAGAAAGAAGTCATGCAATTCTTGACTTGCTTGAGAAGTATCAGGTTCGATTTTAGGTGTTTCGGTTCTTTTCCTCACGAATCCGATATAACTTCCGACGACGACGAAGATGAAGAAGATGAGGAAGAAAACAGAGACGGTCGAGAAAACCATGCGGGTGGTGTGGGAATTAGTCACGGTTCTGACCAGAGTAGCTCTAGGACTGTGTTTTCCAAATGGTTTATGGTTTTACAGGAAAATCAGAGTAATGGGTTTTGTAAAGAGGACAAAAAGGAGAGAAACTGTACGCCAAATTTCGATGACGGTGTCGGAATTGGATCAACTTCTGAAGCTCCAGCGGCCGCCGTTCCACCGCCAAATGCTTTGTTGCTAATGAGGTGCAGGTCCGCCCCTGCAAAAACACGGCTAGAAGAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGACGAAGACGAAGAAGAAGACGGCGACGATGAAGGAGGAGAAAATGGGTTGGAGAAGGAAGAGAAAAAAGCAAAAGTTACACTGAGGAGTTTAATGGAGGAAGACAAGCAGAAAAAGAAGATGGAGAATTTGGTGGTGATGGCATATGATTCTGATCTCTACAATATTTCTTCGGACATTGCAAAGGAGACGTGGGTTGTTGGTGGATTGAAGGAAGCAATTTCCAGGAGTCGAAGTTGGAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

42.52

Weight (kDa)

5.52

Isoelectric Point (pI)

73.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 792
AccBSI CCGCTC 1 cut(s) 192
AciI CCGC 7 cut(s) 127, 192, 575, 758, 762, 773, 807
AclWI GGATC 1 cut(s) 745
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 3 cut(s) 357, 712, 1006
AcuI CTGAAG 1 cut(s) 768
AfaI GTAC 1 cut(s) 706
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 3 cut(s) 60, 421, 1090
AjiI CACGTC 2 cut(s) 264, 1071
AjnI CCWGG 1 cut(s) 1103
AluBI AGCT 4 cut(s) 35, 327, 615, 752
AluI AGCT 4 cut(s) 35, 327, 615, 752
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 3 cut(s) 385, 549, 1061
AlwI GGATC 1 cut(s) 745
AoxI GGCC 3 cut(s) 15, 222, 759
ApoI RAATTY 3 cut(s) 357, 712, 1006
AspS9I GGNCC 3 cut(s) 108, 222, 804
AsuHPI GGTGA 1 cut(s) 1027
AvaII GGWCC 2 cut(s) 108, 804
BanII GRGCYC 2 cut(s) 120, 261
BauI CACGAG 1 cut(s) 316
BbsI GAAGAC 4 cut(s) 882, 891, 903, 987
Bbv12I GWGCWC 1 cut(s) 28
BbvCI CCTCAGC 1 cut(s) 405
BccI CCATC 4 cut(s) 75, 334, 994, 1012
BceAI ACGGC 3 cut(s) 749, 839, 916
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BciT130I CCWGG 1 cut(s) 1105
BcoDI GTCTC 3 cut(s) 385, 549, 1061
BfaI CTAG 3 cut(s) 207, 618, 827
BfuAI ACCTGC 1 cut(s) 792
BisI GCNGC 3 cut(s) 127, 759, 762
BlsI GCNGC 3 cut(s) 128, 760, 763
Bme1390I CCNGG 1 cut(s) 1105
Bme18I GGWCC 2 cut(s) 108, 804
BmgBI CACGTC 2 cut(s) 264, 1071
BmgT120I GGNCC 3 cut(s) 108, 222, 804
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 1105
BmsI GCATC 2 cut(s) 160, 166
BpiI GAAGAC 4 cut(s) 882, 891, 903, 987
BpmI CTGGAG 1 cut(s) 738
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 472
BsaBI GATNNNNATC 1 cut(s) 1032
BsaI GGTCTC 1 cut(s) 385
BsaJI CCNNGG 3 cut(s) 18, 111, 237
BsaXI ACNNNNNCTCC 3 cut(s) 178, 208, 1099
Bse3DI GCAATG 1 cut(s) 1056
Bse8I GATNNNNATC 1 cut(s) 1032
BseBI CCWGG 1 cut(s) 1105
BseDI CCNNGG 3 cut(s) 18, 111, 237
BseJI GATNNNNATC 1 cut(s) 1032
BseMI GCAATG 1 cut(s) 1056
BseMII CTCAG 4 cut(s) 45, 246, 396, 953
BseRI GAGGAG 4 cut(s) 202, 403, 930, 979
BseX3I CGGCCG 1 cut(s) 759
BsgI GTGCAG 1 cut(s) 820
Bsh1285I CGRYCG 2 cut(s) 562, 762
BshFI GGCC 3 cut(s) 17, 224, 761
BsiEI CGRYCG 2 cut(s) 562, 762
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 3 cut(s) 101, 285, 301
BslFI GGGAC 1 cut(s) 250
BsmAI GTCTC 3 cut(s) 385, 549, 1061
BsmBI CGTCTC 2 cut(s) 549, 1061
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 3 cut(s) 17, 224, 761
Bso31I GGTCTC 1 cut(s) 385
Bsp1286I GDGCHC 3 cut(s) 28, 120, 261
Bsp143I GATC 3 cut(s) 37, 737, 1033
BspACI CCGC 7 cut(s) 127, 192, 575, 758, 762, 773, 807
BspANI GGCC 3 cut(s) 17, 224, 761
BspCNI CTCAG 4 cut(s) 44, 247, 397, 954
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 792
BspPI GGATC 1 cut(s) 745
BspTNI GGTCTC 1 cut(s) 385
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 1056
BssECI CCNNGG 3 cut(s) 18, 111, 237
BssMI GATC 3 cut(s) 37, 737, 1033
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 1105
Bst4CI ACNGT 5 cut(s) 560, 599, 625, 704, 725
Bst6I CTCTTC 3 cut(s) 339, 825, 933
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 5 cut(s) 31, 43, 255, 405, 962
BstDSI CCRYGG 1 cut(s) 237
BstKTI GATC 3 cut(s) 40, 740, 1036
BstMAI GTCTC 3 cut(s) 385, 549, 1061
BstMBI GATC 3 cut(s) 37, 737, 1033
BstMCI CGRYCG 2 cut(s) 562, 762
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 758
BstNI CCWGG 1 cut(s) 1105
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 1103
BstV2I GAAGAC 4 cut(s) 882, 891, 903, 987
BstXI CCANNNNNNTGG 2 cut(s) 238, 578
BstZI CGGCCG 1 cut(s) 759
BsuRI GGCC 3 cut(s) 17, 224, 761
BtgI CCRYGG 1 cut(s) 237
BtrI CACGTC 2 cut(s) 264, 1071
BtsIMutI CAGTG 2 cut(s) 342, 959
BveI ACCTGC 1 cut(s) 792
Cac8I GCNNGC 1 cut(s) 329
CciNI GCGGCCGC 1 cut(s) 759
Cfr13I GGNCC 3 cut(s) 108, 222, 804
Csp6I GTAC 1 cut(s) 705
CviAII CATG 5 cut(s) 79, 203, 279, 433, 572
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 5 cut(s) 31, 43, 255, 405, 962
DpnI GATC 3 cut(s) 39, 739, 1035
DpnII GATC 3 cut(s) 37, 737, 1033
EaeI YGGCCR 1 cut(s) 759
EagI CGGCCG 1 cut(s) 759
Eam1104I CTCTTC 3 cut(s) 339, 825, 933
EarI CTCTTC 3 cut(s) 339, 825, 933
EciI GGCGGA 1 cut(s) 796
EclXI CGGCCG 1 cut(s) 759
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 2 cut(s) 120, 261
Eco31I GGTCTC 1 cut(s) 385
Eco47I GGWCC 2 cut(s) 108, 804
Eco52I CGGCCG 1 cut(s) 759
Eco57I CTGAAG 1 cut(s) 768
EcoO109I RGGNCCY 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 1103
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 2 cut(s) 120, 261
ErhI CCWWGG 1 cut(s) 18
Esp3I CGTCTC 2 cut(s) 549, 1061
FaeI CATG 5 cut(s) 82, 206, 282, 436, 575
FaqI GGGAC 1 cut(s) 250
FatI CATG 5 cut(s) 78, 202, 278, 432, 571
FauI CCCGC 1 cut(s) 568
FauNDI CATATG 1 cut(s) 1024
Fnu4HI GCNGC 3 cut(s) 127, 759, 762
FriOI GRGCYC 2 cut(s) 120, 261
Fsp4HI GCNGC 3 cut(s) 127, 759, 762
FspBI CTAG 3 cut(s) 207, 618, 827
GluI GCNGC 3 cut(s) 127, 759, 762
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 3 cut(s) 17, 224, 761
HapII CCGG 3 cut(s) 101, 285, 301
Hin1II CATG 5 cut(s) 82, 206, 282, 436, 575
HinfI GANTC 3 cut(s) 500, 1028, 1108
HpaII CCGG 3 cut(s) 101, 285, 301
HphI GGTGA 1 cut(s) 1027
Hpy188III TCNNGA 5 cut(s) 60, 421, 442, 497, 563
Hpy99I CGWCG 5 cut(s) 521, 524, 527, 884, 908
HpyAV CCTTC 5 cut(s) 3, 66, 905, 928, 1084
HpyCH4III ACNGT 5 cut(s) 560, 599, 625, 704, 725
HpyCH4IV ACGT 2 cut(s) 263, 1070
HpyCH4V TGCA 6 cut(s) 96, 321, 436, 801, 815, 1061
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 758
HpyF3I CTNAG 5 cut(s) 31, 43, 255, 405, 962
HpySE526I ACGT 2 cut(s) 263, 1070
Hsp92II CATG 5 cut(s) 82, 206, 282, 436, 575
Kzo9I GATC 3 cut(s) 37, 737, 1033
LmnI GCTCC 4 cut(s) 23, 115, 189, 757
LweI GCATC 2 cut(s) 160, 166
MaeI CTAG 3 cut(s) 207, 618, 827
MaeII ACGT 2 cut(s) 263, 1070
MaeIII GTNAC 3 cut(s) 274, 593, 955
MalI GATC 3 cut(s) 39, 739, 1035
MbiI CCGCTC 1 cut(s) 192
MboI GATC 3 cut(s) 37, 737, 1033
MfeI CAATTG 1 cut(s) 397
MhlI GDGCHC 3 cut(s) 28, 120, 261
MluCI AATT 9 cut(s) 90, 357, 397, 437, 588, 712, 732, 1006, 1098
MlyI GAGTC 1 cut(s) 1117
MmeI TCCRAC 4 cut(s) 540, 709, 909, 1097
MseI TTAA 1 cut(s) 971
MslI CAYNNNNRTG 1 cut(s) 576
MspA1I CMGCKG 2 cut(s) 35, 758
MspI CCGG 3 cut(s) 101, 285, 301
MspR9I CCNGG 1 cut(s) 1105
MunI CAATTG 1 cut(s) 397
MvaI CCWGG 1 cut(s) 1105
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 758
NdeI CATATG 1 cut(s) 1024
NdeII GATC 3 cut(s) 37, 737, 1033
NlaIII CATG 5 cut(s) 82, 206, 282, 436, 575
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 2 cut(s) 274, 593
NotI GCGGCCGC 1 cut(s) 759
NspI RCATGY 1 cut(s) 282
PciI ACATGT 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 885
PfeI GAWTC 2 cut(s) 500, 1028
PflFI GACNNNGTC 2 cut(s) 232, 725
PfoI TCCNGGA 1 cut(s) 1103
PkrI GCNGC 3 cut(s) 128, 760, 763
PleI GAGTC 1 cut(s) 1116
PpsI GAGTC 1 cut(s) 1116
PpuMI RGGWCCY 1 cut(s) 108
PscI ACATGT 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 1103
PspGI CCWGG 1 cut(s) 1103
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 3 cut(s) 108, 222, 804
PspPPI RGGWCCY 1 cut(s) 108
PsyI GACNNNGTC 2 cut(s) 232, 725
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 1 cut(s) 971
SatI GCNGC 3 cut(s) 127, 759, 762
Sau3AI GATC 3 cut(s) 37, 737, 1033
Sau96I GGNCC 3 cut(s) 108, 222, 804
SchI GAGTC 1 cut(s) 1117
ScrFI CCNGG 1 cut(s) 1105
SduI GDGCHC 3 cut(s) 28, 120, 261
SfaNI GCATC 2 cut(s) 160, 166
SinI GGWCC 2 cut(s) 108, 804
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
Sse9I AATT 9 cut(s) 90, 357, 397, 437, 588, 712, 732, 1006, 1098
SsiI CCGC 7 cut(s) 127, 192, 575, 758, 762, 773, 807
SspI AATATT 1 cut(s) 1045
SspMI CTAG 3 cut(s) 207, 618, 827
StyD4I CCNGG 1 cut(s) 1103
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 5 cut(s) 560, 599, 625, 704, 725
TaiI ACGT 2 cut(s) 266, 1073
TaqI TCGA 5 cut(s) 176, 468, 562, 717, 1111
TasI AATT 9 cut(s) 90, 357, 397, 437, 588, 712, 732, 1006, 1098
TauI GCSGC 3 cut(s) 129, 761, 764
TfiI GAWTC 2 cut(s) 500, 1028
Tru1I TTAA 1 cut(s) 971
Tru9I TTAA 1 cut(s) 971
TscAI CASTG 2 cut(s) 342, 966
TseFI GTSAC 2 cut(s) 274, 593
Tsp45I GTSAC 2 cut(s) 274, 593
TspDTI ATGAA 3 cut(s) 17, 546, 924
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 2 cut(s) 342, 966
Tth111I GACNNNGTC 2 cut(s) 232, 725
VpaK11BI GGWCC 2 cut(s) 108, 804
XapI RAATTY 3 cut(s) 357, 712, 1006
XceI RCATGY 1 cut(s) 282
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XspI CTAG 3 cut(s) 207, 618, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.